RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 MRS2Q9HD23 443 aa2.88□□□□□ -1.95
RTF1-207ENST00000561076 NPDC1Q9NQX5 325 aaPredicted RBP2.88□□□□□ -1.95
RTF1-207ENST00000561076 IGSF5Q9NSI5 407 aa2.88□□□□□ -1.95
RTF1-207ENST00000561076 ADGRG1Q9Y653 693 aa2.88□□□□□ -1.95
RTF1-207ENST00000561076 KDM4AO75164 1064 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 FDX1P10109 184 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 CD44P16070 742 aaKnown RBP2.87□□□□□ -1.95
RTF1-207ENST00000561076 RASA1P20936 1047 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 ATP2B4P23634 1241 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 VAMP1P23763 118 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 TIE1P35590 1138 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 PRIM1P49642 420 aaKnown RBP2.87□□□□□ -1.95
RTF1-207ENST00000561076 USP46P62068 366 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 FGD1P98174 961 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 XPCQ01831 940 aaPredicted RBP2.87□□□□□ -1.95
RTF1-207ENST00000561076 EAPPQ56P03 285 aaPredicted RBP2.87□□□□□ -1.95
RTF1-207ENST00000561076 DPY19L2Q6NUT2 758 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 DHX37Q8IY37 1157 aaKnown RBP2.87□□□□□ -1.95
RTF1-207ENST00000561076 PRR7Q8TB68 274 aa2.87□□□□□ -1.95
RTF1-207ENST00000561076 C6orf229H3BNL8 230 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 SCAMP3O14828 347 aaKnown RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 CD46P15529 392 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 PLCG2P16885 1265 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 ATP2B1P20020 1258 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 SSFA2P28290 1259 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 SERPINB4P48594 390 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 CTDSPL2Q05D32 466 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 MTMR2Q13614 643 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 GRIPAP1Q4V328 841 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 DNAJC14Q6Y2X3 702 aaPredicted RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 NOP9Q86U38 636 aaKnown RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 SLF2Q8IX21 1173 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 ZNF526Q8TF50 670 aaPredicted RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 STK32AQ8WU08 396 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 GJD4Q96KN9 370 aaPredicted RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 CDCA7Q9BWT1 371 aaPredicted RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 CCSER2Q9H7U1 834 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 RBM27Q9P2N5 1060 aaKnown RBP2.86□□□□□ -1.95
RTF1-207ENST00000561076 TRIM35Q9UPQ4 493 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 PCDHB15Q9Y5E8 787 aa2.86□□□□□ -1.95
RTF1-207ENST00000561076 hCG_2014768A0A024R1R8 64 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L3A6NCW0 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L4A6NCW7 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 RCCD1A6NED2 376 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 FAM196BA6NMK8 535 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 TTLL13PA6NNM8 815 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 HMGB1P1B2RPK0 211 aaPredicted RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L15C9J2P7 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L10C9JJH3 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L13C9JLJ4 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L12C9JPN9 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L11C9JVI0 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L21D6R901 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L18D6R9N7 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L22D6RA61 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L17D6RBQ6 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L19D6RCP7 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L20D6RJB6 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 ATP5J2-PTCD1G3V325 749 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 H3BRB1 525 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 LZTS3O60299 673 aaPredicted RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 MARCH6O60337 910 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 DNAJB2P25686 324 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 GTF2F1P35269 517 aaKnown RBP eCLIP2.85□□□□□ -1.95
RTF1-207ENST00000561076 HDGFP51858 240 aaKnown RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 ANAPC15P60006 121 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 IGBP1P78318 339 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L24Q0WX57 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 SLFNL1Q499Z3 407 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 FBXO31Q5XUX0 539 aaPredicted RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L2Q6R6M4 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 DPH6Q7L8W6 267 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L1Q7RTZ2 530 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 TRIM50Q86XT4 487 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 CERS3Q8IU89 383 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 TMC1Q8TDI8 760 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 MS4A3Q96HJ5 214 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 CCDC136Q96JN2 1154 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 UCN2Q96RP3 112 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 DNAJC2Q99543 621 aaKnown RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 OCEL1Q9H607 264 aa2.85□□□□□ -1.95
RTF1-207ENST00000561076 TUT1Q9H6E5 874 aaKnown RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 MKRN1Q9UHC7 482 aaKnown RBP2.85□□□□□ -1.95
RTF1-207ENST00000561076 USP17L5A8MUK1 530 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 NBPF26B4DH59 902 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 KIF3CO14782 793 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 ATP1A2P50993 1020 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 PRSS12P56730 875 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 NR1H3Q13133 447 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 EML3Q32P44 896 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 C6orf132Q5T0Z8 1188 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 KANK4Q5T7N3 995 aaPredicted RBP2.84□□□□□ -1.95
RTF1-207ENST00000561076 GORABQ5T7V8 394 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 RNF187Q5TA31 235 aaPredicted RBP2.84□□□□□ -1.95
RTF1-207ENST00000561076 SOGA3Q5TF21 947 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 NPAS4Q8IUM7 802 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 DEPDC4Q8N2C3 294 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 TMEM87AQ8NBN3 555 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 NFATC2IPQ8NCF5 419 aa2.84□□□□□ -1.95
RTF1-207ENST00000561076 ZCRB1Q8TBF4 217 aaKnown RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms