RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 DLC1Q96QB1 1528 aa13.52□□□□□ -0.25
LDLR-211ENST00000560173 KIAA1210Q9ULL0 1709 aa13.52□□□□□ -0.25
LDLR-211ENST00000560173 MST1RQ04912 1400 aa13.51□□□□□ -0.25
LDLR-211ENST00000560173 WAPLQ7Z5K2 1190 aa13.51□□□□□ -0.25
LDLR-211ENST00000560173 SIRT1Q96EB6 747 aa13.51□□□□□ -0.25
LDLR-211ENST00000560173 CDC42BPGQ6DT37 1551 aa13.49□□□□□ -0.25
LDLR-211ENST00000560173 TONSLQ96HA7 1378 aa13.48□□□□□ -0.25
LDLR-211ENST00000560173 PRAM1Q96QH2 718 aa13.47□□□□□ -0.25
LDLR-211ENST00000560173 TRAK1Q9UPV9 953 aa13.47□□□□□ -0.25
LDLR-211ENST00000560173 PHLPP1O60346 1717 aa13.47□□□□□ -0.25
LDLR-211ENST00000560173 CLSPNQ9HAW4 1339 aa13.46□□□□□ -0.25
LDLR-211ENST00000560173 NBPF1Q3BBV0 1214 aa13.46□□□□□ -0.25
LDLR-211ENST00000560173 C1orf167Q5SNV9 1468 aa13.46□□□□□ -0.25
LDLR-211ENST00000560173 ARHGEF28Q8N1W1 1705 aaKnown RBP13.45□□□□□ -0.26
LDLR-211ENST00000560173 BRINP3Q76B58 766 aa13.45□□□□□ -0.26
LDLR-211ENST00000560173 TRPM1Q7Z4N2 1603 aa13.45□□□□□ -0.26
LDLR-211ENST00000560173 AHDC1Q5TGY3 1603 aaPredicted RBP13.44□□□□□ -0.26
LDLR-211ENST00000560173 POGKQ9P215 609 aa13.44□□□□□ -0.26
LDLR-211ENST00000560173 ADGRB2O60241 1585 aa13.44□□□□□ -0.26
LDLR-211ENST00000560173 SAFB2Q14151 953 aaKnown RBP eCLIP13.43□□□□□ -0.26
LDLR-211ENST00000560173 NBPF8Q3BBV2 869 aa13.43□□□□□ -0.26
LDLR-211ENST00000560173 FMN2Q9NZ56 1722 aa13.42□□□□□ -0.26
LDLR-211ENST00000560173 UPF1Q92900 1129 aaKnown RBP eCLIP13.42□□□□□ -0.26
LDLR-211ENST00000560173 GPRASP1Q5JY77 1395 aa13.42□□□□□ -0.26
LDLR-211ENST00000560173 COL16A1Q07092 1604 aaPredicted RBP13.41□□□□□ -0.26
LDLR-211ENST00000560173 ROCK2O75116 1388 aaKnown RBP13.41□□□□□ -0.26
LDLR-211ENST00000560173 RALGAPBQ86X10 1494 aa13.41□□□□□ -0.26
LDLR-211ENST00000560173 NHSL1Q5SYE7 1610 aa13.4□□□□□ -0.26
LDLR-211ENST00000560173 MINK1Q8N4C8 1332 aaPredicted RBP13.39□□□□□ -0.27
LDLR-211ENST00000560173 CCER1Q8TC90 406 aaPredicted RBP13.39□□□□□ -0.27
LDLR-211ENST00000560173 ORAI2Q96SN7 254 aa13.39□□□□□ -0.27
LDLR-211ENST00000560173 JCADQ9P266 1359 aa13.38□□□□□ -0.27
LDLR-211ENST00000560173 HIRIP3Q9BW71 556 aaPredicted RBP13.38□□□□□ -0.27
LDLR-211ENST00000560173 ANKARQ7Z5J8 1434 aa13.38□□□□□ -0.27
LDLR-211ENST00000560173 NUTM2FA1L443 756 aa13.37□□□□□ -0.27
LDLR-211ENST00000560173 TIMELESSQ9UNS1 1208 aa13.37□□□□□ -0.27
LDLR-211ENST00000560173 CENPJQ9HC77 1338 aaPredicted RBP13.37□□□□□ -0.27
LDLR-211ENST00000560173 LRP6O75581 1613 aa13.36□□□□□ -0.27
LDLR-211ENST00000560173 EIF3AQ14152 1382 aaKnown RBP13.36□□□□□ -0.27
LDLR-211ENST00000560173 USP32Q8NFA0 1604 aa13.36□□□□□ -0.27
LDLR-211ENST00000560173 TULP4Q9NRJ4 1543 aa13.36□□□□□ -0.27
LDLR-211ENST00000560173 ESCO1Q5FWF5 840 aa13.36□□□□□ -0.27
LDLR-211ENST00000560173 WASLO00401 505 aaPredicted RBP13.35□□□□□ -0.27
LDLR-211ENST00000560173 DDX17Q92841 729 aaKnown RBP13.35□□□□□ -0.27
LDLR-211ENST00000560173 KIF1AQ12756 1690 aa13.34□□□□□ -0.27
LDLR-211ENST00000560173 SHPRHQ149N8 1683 aa13.34□□□□□ -0.27
LDLR-211ENST00000560173 SRCAPQ6ZRS2 3230 aa13.34□□□□□ -0.27
LDLR-211ENST00000560173 PRR36Q9H6K5 1346 aa13.34□□□□□ -0.27
LDLR-211ENST00000560173 QRICH2Q9H0J4 1663 aa13.34□□□□□ -0.27
LDLR-211ENST00000560173 CARD11Q9BXL7 1154 aa13.33□□□□□ -0.28
LDLR-211ENST00000560173 ATP7BP35670 1465 aa13.33□□□□□ -0.28
LDLR-211ENST00000560173 PXDNQ92626 1479 aa13.33□□□□□ -0.28
LDLR-211ENST00000560173 SOS2Q07890 1332 aaPredicted RBP13.33□□□□□ -0.28
LDLR-211ENST00000560173 NPHP3Q7Z494 1330 aa13.33□□□□□ -0.28
LDLR-211ENST00000560173 ZNF772Q68DY9 489 aaPredicted RBP13.32□□□□□ -0.28
LDLR-211ENST00000560173 PHF8Q9UPP1 1060 aa13.32□□□□□ -0.28
LDLR-211ENST00000560173 RGPD8O14715 1765 aaPredicted RBP13.32□□□□□ -0.28
LDLR-211ENST00000560173 FOXO3O43524 673 aa13.31□□□□□ -0.28
LDLR-211ENST00000560173 CDK19Q9BWU1 502 aa13.31□□□□□ -0.28
LDLR-211ENST00000560173 SPATA31A6Q5VVP1 1343 aa13.31□□□□□ -0.28
LDLR-211ENST00000560173 LRRC59Q96AG4 307 aaKnown RBP13.3□□□□□ -0.28
LDLR-211ENST00000560173 PNPLA6Q8IY17 1366 aa13.3□□□□□ -0.28
LDLR-211ENST00000560173 SBNO2Q9Y2G9 1366 aa13.3□□□□□ -0.28
LDLR-211ENST00000560173 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
LDLR-211ENST00000560173 MEX3CQ5U5Q3 659 aaKnown RBP13.29□□□□□ -0.28
LDLR-211ENST00000560173 NUDT16Q96DE0 195 aaKnown RBP13.29□□□□□ -0.28
LDLR-211ENST00000560173 TOPAZ1Q8N9V7 1692 aa13.28□□□□□ -0.28
LDLR-211ENST00000560173 ITSN1Q15811 1721 aa13.28□□□□□ -0.28
LDLR-211ENST00000560173 XPCQ01831 940 aaPredicted RBP13.28□□□□□ -0.28
LDLR-211ENST00000560173 RXRBP28702 533 aa13.27□□□□□ -0.29
LDLR-211ENST00000560173 PMFBP1Q8TBY8 1022 aa13.27□□□□□ -0.29
LDLR-211ENST00000560173 SRPK2P78362 688 aaKnown RBP13.26□□□□□ -0.29
LDLR-211ENST00000560173 KRT28Q7Z3Y7 464 aa13.26□□□□□ -0.29
LDLR-211ENST00000560173 EVC2Q86UK5 1308 aa13.26□□□□□ -0.29
LDLR-211ENST00000560173 COL22A1Q8NFW1 1626 aaPredicted RBP13.25□□□□□ -0.29
LDLR-211ENST00000560173 SBNO1A3KN83 1393 aa13.25□□□□□ -0.29
LDLR-211ENST00000560173 CABP2Q9NPB3 220 aa13.25□□□□□ -0.29
LDLR-211ENST00000560173 CCDC61Q9Y6R9 512 aa13.25□□□□□ -0.29
LDLR-211ENST00000560173 TNS3Q68CZ2 1445 aa13.24□□□□□ -0.29
LDLR-211ENST00000560173 POLR3AO14802 1390 aaPredicted RBP13.24□□□□□ -0.29
LDLR-211ENST00000560173 USP47Q96K76 1375 aa13.24□□□□□ -0.29
LDLR-211ENST00000560173 SPATA31A3Q5VYP0 1347 aa13.24□□□□□ -0.29
LDLR-211ENST00000560173 PLEKHG3A1L390 1219 aa13.24□□□□□ -0.29
LDLR-211ENST00000560173 PPIP5K1Q6PFW1 1433 aa13.23□□□□□ -0.29
LDLR-211ENST00000560173 TRPM3Q9HCF6 1732 aaPredicted RBP13.23□□□□□ -0.29
LDLR-211ENST00000560173 PSME1Q06323 249 aa13.23□□□□□ -0.29
LDLR-211ENST00000560173 NGDNQ8NEJ9 315 aaKnown RBP13.23□□□□□ -0.29
LDLR-211ENST00000560173 ST20-MTHFSA0A0A6YYL1 179 aa13.22□□□□□ -0.29
LDLR-211ENST00000560173 TESK2Q96S53 571 aa13.22□□□□□ -0.29
LDLR-211ENST00000560173 ACEP12821 1306 aa13.21□□□□□ -0.29
LDLR-211ENST00000560173 NUTM2BA6NNL0 878 aaPredicted RBP13.21□□□□□ -0.29
LDLR-211ENST00000560173 NUTM2EB1AL46 878 aaPredicted RBP13.21□□□□□ -0.29
LDLR-211ENST00000560173 NUTM2AQ8IVF1 878 aaPredicted RBP13.21□□□□□ -0.29
LDLR-211ENST00000560173 RGS12O14924 1447 aa13.21□□□□□ -0.3
LDLR-211ENST00000560173 ARHGEF10O15013 1369 aa13.2□□□□□ -0.3
LDLR-211ENST00000560173 ATAD2Q6PL18 1390 aa13.2□□□□□ -0.3
LDLR-211ENST00000560173 AFF2P51816 1311 aa13.19□□□□□ -0.3
LDLR-211ENST00000560173 ALS2Q96Q42 1657 aa13.19□□□□□ -0.3
LDLR-211ENST00000560173 CABP1Q9NZU7 370 aa13.19□□□□□ -0.3
LDLR-211ENST00000560173 PUS7Q96PZ0 661 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms