RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 MYOM2P54296 1465 aa26.2■■□□□ 1.78
HDDC3-205ENST00000559898 YTHDC2Q9H6S0 1430 aaKnown RBP26.2■■□□□ 1.78
HDDC3-205ENST00000559898 CDC42BPGQ6DT37 1551 aa26.2■■□□□ 1.78
HDDC3-205ENST00000559898 LAMC1P11047 1609 aa26.19■■□□□ 1.78
HDDC3-205ENST00000559898 C14orf93Q9H972 538 aaKnown RBP26.19■■□□□ 1.78
HDDC3-205ENST00000559898 ABCC11Q96J66 1382 aa26.19■■□□□ 1.78
HDDC3-205ENST00000559898 ACIN1Q9UKV3 1341 aaKnown RBP26.18■■□□□ 1.78
HDDC3-205ENST00000559898 NUTM2FA1L443 756 aa26.18■■□□□ 1.78
HDDC3-205ENST00000559898 PNPLA6Q8IY17 1366 aa26.17■■□□□ 1.78
HDDC3-205ENST00000559898 MEX3CQ5U5Q3 659 aaKnown RBP26.15■■□□□ 1.78
HDDC3-205ENST00000559898 LRRC59Q96AG4 307 aaKnown RBP26.13■■□□□ 1.77
HDDC3-205ENST00000559898 KDM2AQ9Y2K7 1162 aa26.13■■□□□ 1.77
HDDC3-205ENST00000559898 FMN2Q9NZ56 1722 aa26.13■■□□□ 1.77
HDDC3-205ENST00000559898 RGPD8O14715 1765 aaPredicted RBP26.12■■□□□ 1.77
HDDC3-205ENST00000559898 HRCP23327 699 aa26.11■■□□□ 1.77
HDDC3-205ENST00000559898 SOS2Q07890 1332 aaPredicted RBP26.11■■□□□ 1.77
HDDC3-205ENST00000559898 DHX57Q6P158 1386 aaKnown RBP26.1■■□□□ 1.77
HDDC3-205ENST00000559898 XPCQ01831 940 aaPredicted RBP26.1■■□□□ 1.77
HDDC3-205ENST00000559898 ESCO1Q5FWF5 840 aa26.1■■□□□ 1.77
HDDC3-205ENST00000559898 ADGRB1O14514 1584 aa26.1■■□□□ 1.77
HDDC3-205ENST00000559898 SAFB2Q14151 953 aaKnown RBP eCLIP26.09■■□□□ 1.77
HDDC3-205ENST00000559898 DCAF11Q8TEB1 546 aa26.08■■□□□ 1.77
HDDC3-205ENST00000559898 PXDNQ92626 1479 aa26.07■■□□□ 1.76
HDDC3-205ENST00000559898 PRAM1Q96QH2 718 aa26.05■■□□□ 1.76
HDDC3-205ENST00000559898 FOXO3O43524 673 aa26.04■■□□□ 1.76
HDDC3-205ENST00000559898 AFF2P51816 1311 aa26.04■■□□□ 1.76
HDDC3-205ENST00000559898 ADAMTS2O95450 1211 aa26.02■■□□□ 1.76
HDDC3-205ENST00000559898 SIRT1Q96EB6 747 aa26.02■■□□□ 1.76
HDDC3-205ENST00000559898 C8orf37Q96NL8 207 aa26.02■■□□□ 1.76
HDDC3-205ENST00000559898 COL22A1Q8NFW1 1626 aaPredicted RBP26.01■■□□□ 1.75
HDDC3-205ENST00000559898 TRAK1Q9UPV9 953 aa26.01■■□□□ 1.75
HDDC3-205ENST00000559898 USP32Q8NFA0 1604 aa26■■□□□ 1.75
HDDC3-205ENST00000559898 DLC1Q96QB1 1528 aa26■■□□□ 1.75
HDDC3-205ENST00000559898 ZNF772Q68DY9 489 aaPredicted RBP25.99■■□□□ 1.75
HDDC3-205ENST00000559898 NPHP3Q7Z494 1330 aa25.97■■□□□ 1.75
HDDC3-205ENST00000559898 HIRIP3Q9BW71 556 aaPredicted RBP25.96■■□□□ 1.75
HDDC3-205ENST00000559898 KIF1AQ12756 1690 aa25.95■■□□□ 1.74
HDDC3-205ENST00000559898 POGKQ9P215 609 aa25.94■■□□□ 1.74
HDDC3-205ENST00000559898 ARHGEF28Q8N1W1 1705 aaKnown RBP25.94■■□□□ 1.74
HDDC3-205ENST00000559898 MINK1Q8N4C8 1332 aaPredicted RBP25.92■■□□□ 1.74
HDDC3-205ENST00000559898 ADGRB2O60241 1585 aa25.92■■□□□ 1.74
HDDC3-205ENST00000559898 RXRBP28702 533 aa25.9■■□□□ 1.74
HDDC3-205ENST00000559898 NGLY1Q96IV0 654 aa25.9■■□□□ 1.74
HDDC3-205ENST00000559898 PHF8Q9UPP1 1060 aa25.9■■□□□ 1.74
HDDC3-205ENST00000559898 MARF1Q9Y4F3 1742 aaKnown RBP25.9■■□□□ 1.74
HDDC3-205ENST00000559898 KRT28Q7Z3Y7 464 aa25.89■■□□□ 1.74
HDDC3-205ENST00000559898 QTRT2Q9H974 415 aaKnown RBP25.89■■□□□ 1.74
HDDC3-205ENST00000559898 PRR36Q9H6K5 1346 aa25.88■■□□□ 1.73
HDDC3-205ENST00000559898 PMFBP1Q8TBY8 1022 aa25.88■■□□□ 1.73
HDDC3-205ENST00000559898 SPATA31A3Q5VYP0 1347 aa25.87■■□□□ 1.73
HDDC3-205ENST00000559898 PLEKHG5O94827 1062 aa25.86■■□□□ 1.73
HDDC3-205ENST00000559898 NBPF1Q3BBV0 1214 aa25.85■■□□□ 1.73
HDDC3-205ENST00000559898 RGS12O14924 1447 aa25.85■■□□□ 1.73
HDDC3-205ENST00000559898 SIN3AQ96ST3 1273 aa25.84■■□□□ 1.73
HDDC3-205ENST00000559898 CABLES1Q8TDN4 633 aa25.82■■□□□ 1.72
HDDC3-205ENST00000559898 USP21Q9UK80 565 aa25.82■■□□□ 1.72
HDDC3-205ENST00000559898 KIAA1210Q9ULL0 1709 aa25.82■■□□□ 1.72
HDDC3-205ENST00000559898 ABCA3Q99758 1704 aa25.81■■□□□ 1.72
HDDC3-205ENST00000559898 TRPM3Q9HCF6 1732 aaPredicted RBP25.81■■□□□ 1.72
HDDC3-205ENST00000559898 FNBP4Q8N3X1 1017 aaPredicted RBP25.81■■□□□ 1.72
HDDC3-205ENST00000559898 STAC3Q96MF2 364 aa25.81■■□□□ 1.72
HDDC3-205ENST00000559898 TNS3Q68CZ2 1445 aa25.8■■□□□ 1.72
HDDC3-205ENST00000559898 ANKARQ7Z5J8 1434 aa25.8■■□□□ 1.72
HDDC3-205ENST00000559898 BCL9LQ86UU0 1499 aa25.8■■□□□ 1.72
HDDC3-205ENST00000559898 CDK12Q9NYV4 1490 aaPredicted RBP25.8■■□□□ 1.72
HDDC3-205ENST00000559898 TULP4Q9NRJ4 1543 aa25.8■■□□□ 1.72
HDDC3-205ENST00000559898 WASLO00401 505 aaPredicted RBP25.8■■□□□ 1.72
HDDC3-205ENST00000559898 RBM6P78332 1123 aaKnown RBP25.78■■□□□ 1.72
HDDC3-205ENST00000559898 UPF1Q92900 1129 aaKnown RBP eCLIP25.78■■□□□ 1.72
HDDC3-205ENST00000559898 ATRNO75882 1429 aa25.78■■□□□ 1.72
HDDC3-205ENST00000559898 PSME1Q06323 249 aa25.76■■□□□ 1.71
HDDC3-205ENST00000559898 L3MBTL2Q969R5 705 aa25.76■■□□□ 1.71
HDDC3-205ENST00000559898 ATP7BP35670 1465 aa25.74■■□□□ 1.71
HDDC3-205ENST00000559898 SBNO1A3KN83 1393 aa25.74■■□□□ 1.71
HDDC3-205ENST00000559898 LMOD2Q6P5Q4 547 aa25.74■■□□□ 1.71
HDDC3-205ENST00000559898 ALS2Q96Q42 1657 aa25.74■■□□□ 1.71
HDDC3-205ENST00000559898 NEUROD1Q13562 356 aa25.72■■□□□ 1.71
HDDC3-205ENST00000559898 TRPC5Q9UL62 973 aaPredicted RBP25.72■■□□□ 1.71
HDDC3-205ENST00000559898 SLIT2O94813 1529 aa25.71■■□□□ 1.71
HDDC3-205ENST00000559898 NUDT16Q96DE0 195 aaKnown RBP25.7■■□□□ 1.7
HDDC3-205ENST00000559898 CDK19Q9BWU1 502 aa25.7■■□□□ 1.7
HDDC3-205ENST00000559898 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.7■■□□□ 1.7
HDDC3-205ENST00000559898 PLCH1Q4KWH8 1693 aa25.7■■□□□ 1.7
HDDC3-205ENST00000559898 TOPAZ1Q8N9V7 1692 aa25.69■■□□□ 1.7
HDDC3-205ENST00000559898 ITSN1Q15811 1721 aa25.68■■□□□ 1.7
HDDC3-205ENST00000559898 GLI3P10071 1580 aa25.68■■□□□ 1.7
HDDC3-205ENST00000559898 CRYBG1Q9Y4K1 1723 aa25.68■■□□□ 1.7
HDDC3-205ENST00000559898 TRPM1Q7Z4N2 1603 aa25.66■■□□□ 1.7
HDDC3-205ENST00000559898 QRICH2Q9H0J4 1663 aa25.65■■□□□ 1.7
HDDC3-205ENST00000559898 EIF3AQ14152 1382 aaKnown RBP25.65■■□□□ 1.7
HDDC3-205ENST00000559898 HAP1P54257 671 aaPredicted RBP25.64■■□□□ 1.7
HDDC3-205ENST00000559898 NGDNQ8NEJ9 315 aaKnown RBP25.64■■□□□ 1.7
HDDC3-205ENST00000559898 ARHGEF10O15013 1369 aa25.64■■□□□ 1.69
HDDC3-205ENST00000559898 UNC5CLQ8IV45 518 aa25.63■■□□□ 1.69
HDDC3-205ENST00000559898 GJD4Q96KN9 370 aaPredicted RBP25.63■■□□□ 1.69
HDDC3-205ENST00000559898 RALGAPBQ86X10 1494 aa25.63■■□□□ 1.69
HDDC3-205ENST00000559898 GPRASP1Q5JY77 1395 aa25.62■■□□□ 1.69
HDDC3-205ENST00000559898 FAM83GA6ND36 823 aa25.62■■□□□ 1.69
HDDC3-205ENST00000559898 PAK3O75914 559 aaPredicted RBP25.6■■□□□ 1.69
HDDC3-205ENST00000559898 NBPF8Q3BBV2 869 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms