RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 SCAF1Q9H7N4 1312 aaKnown RBP29.02■■■□□ 2.24
TSPAN3-207ENST00000559494 TRPM1Q7Z4N2 1603 aa29.01■■■□□ 2.24
TSPAN3-207ENST00000559494 POGKQ9P215 609 aa29.01■■■□□ 2.23
TSPAN3-207ENST00000559494 NALCNQ8IZF0 1738 aa29.01■■■□□ 2.23
TSPAN3-207ENST00000559494 SAFB2Q14151 953 aaKnown RBP eCLIP29■■■□□ 2.23
TSPAN3-207ENST00000559494 DCCP43146 1447 aa28.99■■■□□ 2.23
TSPAN3-207ENST00000559494 ROCK2O75116 1388 aaKnown RBP28.96■■■□□ 2.23
TSPAN3-207ENST00000559494 GPRASP1Q5JY77 1395 aa28.93■■■□□ 2.22
TSPAN3-207ENST00000559494 ARHGEF28Q8N1W1 1705 aaKnown RBP28.92■■■□□ 2.22
TSPAN3-207ENST00000559494 MST1RQ04912 1400 aa28.91■■■□□ 2.22
TSPAN3-207ENST00000559494 RALGAPBQ86X10 1494 aa28.9■■■□□ 2.22
TSPAN3-207ENST00000559494 MINK1Q8N4C8 1332 aaPredicted RBP28.9■■■□□ 2.22
TSPAN3-207ENST00000559494 CARD11Q9BXL7 1154 aa28.89■■■□□ 2.21
TSPAN3-207ENST00000559494 HIRIP3Q9BW71 556 aaPredicted RBP28.88■■■□□ 2.21
TSPAN3-207ENST00000559494 CDC42BPGQ6DT37 1551 aa28.86■■■□□ 2.21
TSPAN3-207ENST00000559494 HSPA1LP34931 641 aa28.86■■■□□ 2.21
TSPAN3-207ENST00000559494 C1orf167Q5SNV9 1468 aa28.85■■■□□ 2.21
TSPAN3-207ENST00000559494 BRINP3Q76B58 766 aa28.85■■■□□ 2.21
TSPAN3-207ENST00000559494 ROBO1Q9Y6N7 1651 aa28.84■■■□□ 2.21
TSPAN3-207ENST00000559494 NUTM2FA1L443 756 aa28.84■■■□□ 2.21
TSPAN3-207ENST00000559494 CENPJQ9HC77 1338 aaPredicted RBP28.83■■■□□ 2.21
TSPAN3-207ENST00000559494 ORAI2Q96SN7 254 aa28.82■■■□□ 2.2
TSPAN3-207ENST00000559494 WASLO00401 505 aaPredicted RBP28.8■■■□□ 2.2
TSPAN3-207ENST00000559494 FMN2Q9NZ56 1722 aa28.78■■■□□ 2.2
TSPAN3-207ENST00000559494 ADGRB2O60241 1585 aa28.78■■■□□ 2.2
TSPAN3-207ENST00000559494 ESCO1Q5FWF5 840 aa28.76■■■□□ 2.19
TSPAN3-207ENST00000559494 CDK19Q9BWU1 502 aa28.75■■■□□ 2.19
TSPAN3-207ENST00000559494 EIF3AQ14152 1382 aaKnown RBP28.74■■■□□ 2.19
TSPAN3-207ENST00000559494 DDX17Q92841 729 aaKnown RBP28.73■■■□□ 2.19
TSPAN3-207ENST00000559494 PRR36Q9H6K5 1346 aa28.71■■■□□ 2.19
TSPAN3-207ENST00000559494 QRICH2Q9H0J4 1663 aa28.71■■■□□ 2.19
TSPAN3-207ENST00000559494 RGPD8O14715 1765 aaPredicted RBP28.71■■■□□ 2.19
TSPAN3-207ENST00000559494 ANKARQ7Z5J8 1434 aa28.69■■■□□ 2.18
TSPAN3-207ENST00000559494 ST20-MTHFSA0A0A6YYL1 179 aa28.68■■■□□ 2.18
TSPAN3-207ENST00000559494 NUDT16Q96DE0 195 aaKnown RBP28.68■■■□□ 2.18
TSPAN3-207ENST00000559494 USP32Q8NFA0 1604 aa28.68■■■□□ 2.18
TSPAN3-207ENST00000559494 AHDC1Q5TGY3 1603 aaPredicted RBP28.67■■■□□ 2.18
TSPAN3-207ENST00000559494 PHF8Q9UPP1 1060 aa28.67■■■□□ 2.18
TSPAN3-207ENST00000559494 TULP4Q9NRJ4 1543 aa28.66■■■□□ 2.18
TSPAN3-207ENST00000559494 FOXO3O43524 673 aa28.66■■■□□ 2.18
TSPAN3-207ENST00000559494 PHLPP1O60346 1717 aa28.66■■■□□ 2.18
TSPAN3-207ENST00000559494 CABP2Q9NPB3 220 aa28.65■■■□□ 2.18
TSPAN3-207ENST00000559494 EVC2Q86UK5 1308 aa28.64■■■□□ 2.18
TSPAN3-207ENST00000559494 USP47Q96K76 1375 aa28.63■■■□□ 2.17
TSPAN3-207ENST00000559494 NHSL1Q5SYE7 1610 aa28.63■■■□□ 2.17
TSPAN3-207ENST00000559494 SRPK2P78362 688 aaKnown RBP28.63■■■□□ 2.17
TSPAN3-207ENST00000559494 PMFBP1Q8TBY8 1022 aa28.63■■■□□ 2.17
TSPAN3-207ENST00000559494 SBNO2Q9Y2G9 1366 aa28.62■■■□□ 2.17
TSPAN3-207ENST00000559494 TESK2Q96S53 571 aa28.62■■■□□ 2.17
TSPAN3-207ENST00000559494 COL16A1Q07092 1604 aaPredicted RBP28.61■■■□□ 2.17
TSPAN3-207ENST00000559494 ATP7BP35670 1465 aa28.61■■■□□ 2.17
TSPAN3-207ENST00000559494 SOS2Q07890 1332 aaPredicted RBP28.6■■■□□ 2.17
TSPAN3-207ENST00000559494 CCDC61Q9Y6R9 512 aa28.6■■■□□ 2.17
TSPAN3-207ENST00000559494 NPHP3Q7Z494 1330 aa28.59■■■□□ 2.17
TSPAN3-207ENST00000559494 XPCQ01831 940 aaPredicted RBP28.58■■■□□ 2.17
TSPAN3-207ENST00000559494 LRRC59Q96AG4 307 aaKnown RBP28.56■■■□□ 2.16
TSPAN3-207ENST00000559494 KIF1AQ12756 1690 aa28.55■■■□□ 2.16
TSPAN3-207ENST00000559494 KRT28Q7Z3Y7 464 aa28.55■■■□□ 2.16
TSPAN3-207ENST00000559494 PLEKHG3A1L390 1219 aa28.54■■■□□ 2.16
TSPAN3-207ENST00000559494 PXDNQ92626 1479 aa28.53■■■□□ 2.16
TSPAN3-207ENST00000559494 JCADQ9P266 1359 aa28.53■■■□□ 2.16
TSPAN3-207ENST00000559494 PSME1Q06323 249 aa28.52■■■□□ 2.16
TSPAN3-207ENST00000559494 NGDNQ8NEJ9 315 aaKnown RBP28.52■■■□□ 2.16
TSPAN3-207ENST00000559494 SLC24A1O60721 1099 aa28.5■■■□□ 2.15
TSPAN3-207ENST00000559494 EIF4G2P78344 907 aaKnown RBP eCLIP28.5■■■□□ 2.15
TSPAN3-207ENST00000559494 CABP1Q9NZU7 370 aa28.5■■■□□ 2.15
TSPAN3-207ENST00000559494 HSPA5P11021 654 aaKnown RBP28.49■■■□□ 2.15
TSPAN3-207ENST00000559494 ITSN1Q15811 1721 aa28.49■■■□□ 2.15
TSPAN3-207ENST00000559494 TOPAZ1Q8N9V7 1692 aa28.49■■■□□ 2.15
TSPAN3-207ENST00000559494 ACEP12821 1306 aa28.48■■■□□ 2.15
TSPAN3-207ENST00000559494 PPIP5K1Q6PFW1 1433 aa28.48■■■□□ 2.15
TSPAN3-207ENST00000559494 PUS7Q96PZ0 661 aaKnown RBP28.46■■■□□ 2.15
TSPAN3-207ENST00000559494 POLR3AO14802 1390 aaPredicted RBP28.45■■■□□ 2.15
TSPAN3-207ENST00000559494 ATAD2Q6PL18 1390 aa28.45■■■□□ 2.15
TSPAN3-207ENST00000559494 TMF1P82094 1093 aa28.45■■■□□ 2.15
TSPAN3-207ENST00000559494 PNPLA6Q8IY17 1366 aa28.45■■■□□ 2.14
TSPAN3-207ENST00000559494 SPATA31A3Q5VYP0 1347 aa28.45■■■□□ 2.14
TSPAN3-207ENST00000559494 DISP3Q9P2K9 1392 aa28.44■■■□□ 2.14
TSPAN3-207ENST00000559494 SBNO1A3KN83 1393 aa28.42■■■□□ 2.14
TSPAN3-207ENST00000559494 SHPRHQ149N8 1683 aa28.41■■■□□ 2.14
TSPAN3-207ENST00000559494 SPATA31A6Q5VVP1 1343 aa28.39■■■□□ 2.14
TSPAN3-207ENST00000559494 SLC12A5Q9H2X9 1139 aa28.39■■■□□ 2.13
TSPAN3-207ENST00000559494 TMC1Q8TDI8 760 aa28.38■■■□□ 2.13
TSPAN3-207ENST00000559494 TRPM3Q9HCF6 1732 aaPredicted RBP28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 TNS3Q68CZ2 1445 aa28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 NUTM2BA6NNL0 878 aaPredicted RBP28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 NUTM2EB1AL46 878 aaPredicted RBP28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 PAK3O75914 559 aaPredicted RBP28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 LMOD2Q6P5Q4 547 aa28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 NUTM2AQ8IVF1 878 aaPredicted RBP28.36■■■□□ 2.13
TSPAN3-207ENST00000559494 CDCA8Q53HL2 280 aa28.34■■■□□ 2.13
TSPAN3-207ENST00000559494 ZNF692Q9BU19 519 aaPredicted RBP28.34■■■□□ 2.13
TSPAN3-207ENST00000559494 CPSF1Q10570 1443 aaKnown RBP28.32■■■□□ 2.12
TSPAN3-207ENST00000559494 MED1Q15648 1581 aaPredicted RBP28.32■■■□□ 2.12
TSPAN3-207ENST00000559494 LRP6O75581 1613 aa28.31■■■□□ 2.12
TSPAN3-207ENST00000559494 COL22A1Q8NFW1 1626 aaPredicted RBP28.31■■■□□ 2.12
TSPAN3-207ENST00000559494 ARHGEF10O15013 1369 aa28.3■■■□□ 2.12
TSPAN3-207ENST00000559494 USP6P35125 1406 aa28.3■■■□□ 2.12
TSPAN3-207ENST00000559494 CD163L1Q9NR16 1453 aa28.3■■■□□ 2.12
TSPAN3-207ENST00000559494 C11orf95C9JLR9 678 aaPredicted RBP28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms