RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 IRF7Q92985 503 aa3.95□□□□□ -1.78
USP3-209ENST00000558925 KIFC2Q96AC6 838 aa3.95□□□□□ -1.78
USP3-209ENST00000558925 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.94□□□□□ -1.78
USP3-209ENST00000558925 SKOR1P84550 965 aa3.94□□□□□ -1.78
USP3-209ENST00000558925 BRICD5Q6PL45 260 aa3.94□□□□□ -1.78
USP3-209ENST00000558925 FMNL1O95466 1100 aaPredicted RBP3.93□□□□□ -1.78
USP3-209ENST00000558925 FECHP22830 423 aa3.92□□□□□ -1.78
USP3-209ENST00000558925 HAP1P54257 671 aaPredicted RBP3.92□□□□□ -1.78
USP3-209ENST00000558925 KCNMA1Q12791 1236 aa3.92□□□□□ -1.78
USP3-209ENST00000558925 NPAS3Q8IXF0 933 aa3.92□□□□□ -1.78
USP3-209ENST00000558925 NLRP7Q8WX94 980 aa3.92□□□□□ -1.78
USP3-209ENST00000558925 ZBTB24O43167 697 aaPredicted RBP3.91□□□□□ -1.78
USP3-209ENST00000558925 MSS51Q4VC12 460 aa3.91□□□□□ -1.78
USP3-209ENST00000558925 RC3H1Q5TC82 1133 aaKnown RBP3.91□□□□□ -1.78
USP3-209ENST00000558925 METTL3Q86U44 580 aaKnown RBP3.91□□□□□ -1.78
USP3-209ENST00000558925 SOBPA7XYQ1 873 aa3.9□□□□□ -1.79
USP3-209ENST00000558925 ATP6V1AP38606 617 aa3.9□□□□□ -1.79
USP3-209ENST00000558925 MMP16P51512 607 aa3.9□□□□□ -1.79
USP3-209ENST00000558925 SALL2Q9Y467 1007 aaPredicted RBP3.9□□□□□ -1.79
USP3-209ENST00000558925 SIAH2O43255 324 aa3.89□□□□□ -1.79
USP3-209ENST00000558925 ALDH1A1P00352 501 aa3.89□□□□□ -1.79
USP3-209ENST00000558925 GCGRP47871 477 aa3.89□□□□□ -1.79
USP3-209ENST00000558925 RDH13Q8NBN7 331 aa3.89□□□□□ -1.79
USP3-209ENST00000558925 ZFP42Q96MM3 310 aa3.89□□□□□ -1.79
USP3-209ENST00000558925 NUTM2FA1L443 756 aa3.88□□□□□ -1.79
USP3-209ENST00000558925 DDX11L8A8MPP1 907 aa3.88□□□□□ -1.79
USP3-209ENST00000558925 CAPN5O15484 640 aaPredicted RBP3.88□□□□□ -1.79
USP3-209ENST00000558925 VSIG8P0DPA2 414 aa3.88□□□□□ -1.79
USP3-209ENST00000558925 XP32Q5T750 250 aa3.88□□□□□ -1.79
USP3-209ENST00000558925 REPIN1Q9BWE0 567 aaKnown RBP3.88□□□□□ -1.79
USP3-209ENST00000558925 DXOO77932 396 aaKnown RBP3.87□□□□□ -1.79
USP3-209ENST00000558925 OATP04181 439 aa3.87□□□□□ -1.79
USP3-209ENST00000558925 RASSF7Q02833 373 aa3.87□□□□□ -1.79
USP3-209ENST00000558925 BBXQ8WY36 941 aaPredicted RBP3.87□□□□□ -1.79
USP3-209ENST00000558925 PHOX2BQ99453 314 aa3.87□□□□□ -1.79
USP3-209ENST00000558925 KRTAP4-8Q9BYQ9 185 aa3.87□□□□□ -1.79
USP3-209ENST00000558925 WDR70Q9NW82 654 aa3.87□□□□□ -1.79
USP3-209ENST00000558925 GDF11O95390 407 aa3.86□□□□□ -1.79
USP3-209ENST00000558925 KRT76Q01546 638 aa3.86□□□□□ -1.79
USP3-209ENST00000558925 TMEM151AQ8N4L1 468 aa3.86□□□□□ -1.79
USP3-209ENST00000558925 HLA-CQ95604 372 aa3.86□□□□□ -1.79
USP3-209ENST00000558925 DAXXQ9UER7 740 aaPredicted RBP3.86□□□□□ -1.79
USP3-209ENST00000558925 FCHSD2O94868 740 aa3.85□□□□□ -1.79
USP3-209ENST00000558925 WNT7BP56706 349 aa3.85□□□□□ -1.79
USP3-209ENST00000558925 PTCRAQ6ISU1 281 aaPredicted RBP3.85□□□□□ -1.79
USP3-209ENST00000558925 PAXIP1Q6ZW49 1069 aaPredicted RBP3.85□□□□□ -1.79
USP3-209ENST00000558925 CFAP44Q96MT7 982 aa3.85□□□□□ -1.79
USP3-209ENST00000558925 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.84□□□□□ -1.79
USP3-209ENST00000558925 RSPH4AQ5TD94 716 aa3.84□□□□□ -1.79
USP3-209ENST00000558925 CCDC24Q8N4L8 307 aa3.84□□□□□ -1.79
USP3-209ENST00000558925 KCNV2Q8TDN2 545 aa3.84□□□□□ -1.79
USP3-209ENST00000558925 KDM2AQ9Y2K7 1162 aa3.84□□□□□ -1.79
USP3-209ENST00000558925 GPR37O15354 613 aa3.83□□□□□ -1.8
USP3-209ENST00000558925 SPRYD3Q8NCJ5 442 aa3.83□□□□□ -1.8
USP3-209ENST00000558925 PURBQ96QR8 312 aaKnown RBP3.83□□□□□ -1.8
USP3-209ENST00000558925 USB1Q9BQ65 265 aaKnown RBP3.83□□□□□ -1.8
USP3-209ENST00000558925 ADAMTS8Q9UP79 889 aa3.83□□□□□ -1.8
USP3-209ENST00000558925 TLL2Q9Y6L7 1015 aa3.83□□□□□ -1.8
USP3-209ENST00000558925 GPAT2Q6NUI2 795 aa3.82□□□□□ -1.8
USP3-209ENST00000558925 MRPL14Q6P1L8 145 aaKnown RBP3.82□□□□□ -1.8
USP3-209ENST00000558925 GPR161Q8N6U8 529 aaKnown RBP3.82□□□□□ -1.8
USP3-209ENST00000558925 ARHGEF1Q92888 912 aaKnown RBP3.82□□□□□ -1.8
USP3-209ENST00000558925 KRTAP9-2Q9BYQ4 174 aa3.82□□□□□ -1.8
USP3-209ENST00000558925 TSHZ2Q9NRE2 1034 aa3.82□□□□□ -1.8
USP3-209ENST00000558925 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.82□□□□□ -1.8
USP3-209ENST00000558925 KRTAP9-6A0A140TA67 174 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 SH3BP2P78314 561 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 HIC1Q14526 733 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 VSIG10Q8N0Z9 540 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 EHBP1Q8NDI1 1231 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 KLF16Q9BXK1 252 aaPredicted RBP3.81□□□□□ -1.8
USP3-209ENST00000558925 WASF2Q9Y6W5 498 aa3.81□□□□□ -1.8
USP3-209ENST00000558925 PPFIA3O75145 1194 aa3.8□□□□□ -1.8
USP3-209ENST00000558925 PRKCSHP14314 528 aaPredicted RBP3.8□□□□□ -1.8
USP3-209ENST00000558925 TIMP2P16035 220 aa3.8□□□□□ -1.8
USP3-209ENST00000558925 GUCA2AQ02747 115 aa3.8□□□□□ -1.8
USP3-209ENST00000558925 Q3C1V9 767 aa3.8□□□□□ -1.8
USP3-209ENST00000558925 SYMPKQ92797 1274 aaKnown RBP3.8□□□□□ -1.8
USP3-209ENST00000558925 SEMA3EO15041 775 aa3.79□□□□□ -1.8
USP3-209ENST00000558925 RBM26Q5T8P6 1007 aaKnown RBP3.79□□□□□ -1.8
USP3-209ENST00000558925 ZNF385CQ66K41 422 aaPredicted RBP3.79□□□□□ -1.8
USP3-209ENST00000558925 WHAMMQ8TF30 809 aa3.79□□□□□ -1.8
USP3-209ENST00000558925 CD46P15529 392 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 JUNDP17535 347 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 NNTQ13423 1086 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 RNFT1Q5M7Z0 435 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 SULF1Q8IWU6 871 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 CNTNAP3BQ96NU0 1288 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 CNTNAP3Q9BZ76 1288 aa3.78□□□□□ -1.8
USP3-209ENST00000558925 DNMT3AQ9Y6K1 912 aaPredicted RBP3.78□□□□□ -1.8
USP3-209ENST00000558925 GNPATO15228 680 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 ITGB2P05107 769 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 IRS1P35568 1242 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 WDR4P57081 412 aaKnown RBP3.77□□□□□ -1.81
USP3-209ENST00000558925 GRIPAP1Q4V328 841 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 BCANQ96GW7 911 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 NUDT12Q9BQG2 462 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 ZFAND3Q9H8U3 227 aa3.77□□□□□ -1.81
USP3-209ENST00000558925 ADAM23O75077 832 aa3.76□□□□□ -1.81
USP3-209ENST00000558925 KDM4AO75164 1064 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms