RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 TRPM1Q7Z4N2 1603 aa17.91■□□□□ 0.46
LRRC28-206ENST00000558471 PRAM1Q96QH2 718 aa17.91■□□□□ 0.46
LRRC28-206ENST00000558471 DCCP43146 1447 aa17.9■□□□□ 0.46
LRRC28-206ENST00000558471 SAFB2Q14151 953 aaKnown RBP eCLIP17.89■□□□□ 0.45
LRRC28-206ENST00000558471 POGKQ9P215 609 aa17.89■□□□□ 0.45
LRRC28-206ENST00000558471 ARHGEF28Q8N1W1 1705 aaKnown RBP17.88■□□□□ 0.45
LRRC28-206ENST00000558471 TIMELESSQ9UNS1 1208 aa17.87■□□□□ 0.45
LRRC28-206ENST00000558471 ROBO1Q9Y6N7 1651 aa17.87■□□□□ 0.45
LRRC28-206ENST00000558471 MST1RQ04912 1400 aa17.86■□□□□ 0.45
LRRC28-206ENST00000558471 ROCK2O75116 1388 aaKnown RBP17.85■□□□□ 0.45
LRRC28-206ENST00000558471 HSPA1LP34931 641 aa17.84■□□□□ 0.45
LRRC28-206ENST00000558471 CDC42BPGQ6DT37 1551 aa17.83■□□□□ 0.45
LRRC28-206ENST00000558471 MINK1Q8N4C8 1332 aaPredicted RBP17.82■□□□□ 0.44
LRRC28-206ENST00000558471 GPRASP1Q5JY77 1395 aa17.81■□□□□ 0.44
LRRC28-206ENST00000558471 BRINP3Q76B58 766 aa17.81■□□□□ 0.44
LRRC28-206ENST00000558471 HIRIP3Q9BW71 556 aaPredicted RBP17.81■□□□□ 0.44
LRRC28-206ENST00000558471 C1orf167Q5SNV9 1468 aa17.81■□□□□ 0.44
LRRC28-206ENST00000558471 RALGAPBQ86X10 1494 aa17.81■□□□□ 0.44
LRRC28-206ENST00000558471 FMN2Q9NZ56 1722 aa17.81■□□□□ 0.44
LRRC28-206ENST00000558471 NUTM2FA1L443 756 aa17.8■□□□□ 0.44
LRRC28-206ENST00000558471 ORAI2Q96SN7 254 aa17.79■□□□□ 0.44
LRRC28-206ENST00000558471 CARD11Q9BXL7 1154 aa17.79■□□□□ 0.44
LRRC28-206ENST00000558471 RGPD8O14715 1765 aaPredicted RBP17.79■□□□□ 0.44
LRRC28-206ENST00000558471 ADGRB2O60241 1585 aa17.78■□□□□ 0.44
LRRC28-206ENST00000558471 CENPJQ9HC77 1338 aaPredicted RBP17.77■□□□□ 0.44
LRRC28-206ENST00000558471 WASLO00401 505 aaPredicted RBP17.76■□□□□ 0.43
LRRC28-206ENST00000558471 PHLPP1O60346 1717 aa17.75■□□□□ 0.43
LRRC28-206ENST00000558471 QRICH2Q9H0J4 1663 aa17.75■□□□□ 0.43
LRRC28-206ENST00000558471 ESCO1Q5FWF5 840 aa17.75■□□□□ 0.43
LRRC28-206ENST00000558471 DDX17Q92841 729 aaKnown RBP17.74■□□□□ 0.43
LRRC28-206ENST00000558471 USP32Q8NFA0 1604 aa17.73■□□□□ 0.43
LRRC28-206ENST00000558471 CDK19Q9BWU1 502 aa17.73■□□□□ 0.43
LRRC28-206ENST00000558471 NHSL1Q5SYE7 1610 aa17.72■□□□□ 0.43
LRRC28-206ENST00000558471 AHDC1Q5TGY3 1603 aaPredicted RBP17.72■□□□□ 0.43
LRRC28-206ENST00000558471 EIF3AQ14152 1382 aaKnown RBP17.72■□□□□ 0.43
LRRC28-206ENST00000558471 PRR36Q9H6K5 1346 aa17.71■□□□□ 0.42
LRRC28-206ENST00000558471 COL16A1Q07092 1604 aaPredicted RBP17.7■□□□□ 0.42
LRRC28-206ENST00000558471 ANKARQ7Z5J8 1434 aa17.7■□□□□ 0.42
LRRC28-206ENST00000558471 TULP4Q9NRJ4 1543 aa17.69■□□□□ 0.42
LRRC28-206ENST00000558471 FOXO3O43524 673 aa17.69■□□□□ 0.42
LRRC28-206ENST00000558471 PHF8Q9UPP1 1060 aa17.69■□□□□ 0.42
LRRC28-206ENST00000558471 NUDT16Q96DE0 195 aaKnown RBP17.68■□□□□ 0.42
LRRC28-206ENST00000558471 PMFBP1Q8TBY8 1022 aa17.67■□□□□ 0.42
LRRC28-206ENST00000558471 KIF1AQ12756 1690 aa17.67■□□□□ 0.42
LRRC28-206ENST00000558471 ST20-MTHFSA0A0A6YYL1 179 aa17.66■□□□□ 0.42
LRRC28-206ENST00000558471 SRPK2P78362 688 aaKnown RBP17.66■□□□□ 0.42
LRRC28-206ENST00000558471 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
LRRC28-206ENST00000558471 SOS2Q07890 1332 aaPredicted RBP17.66■□□□□ 0.42
LRRC28-206ENST00000558471 NPHP3Q7Z494 1330 aa17.66■□□□□ 0.42
LRRC28-206ENST00000558471 ATP7BP35670 1465 aa17.65■□□□□ 0.42
LRRC28-206ENST00000558471 XPCQ01831 940 aaPredicted RBP17.65■□□□□ 0.42
LRRC28-206ENST00000558471 EVC2Q86UK5 1308 aa17.65■□□□□ 0.42
LRRC28-206ENST00000558471 ITSN1Q15811 1721 aa17.64■□□□□ 0.41
LRRC28-206ENST00000558471 LRRC59Q96AG4 307 aaKnown RBP17.64■□□□□ 0.41
LRRC28-206ENST00000558471 CCDC61Q9Y6R9 512 aa17.64■□□□□ 0.41
LRRC28-206ENST00000558471 USP47Q96K76 1375 aa17.64■□□□□ 0.41
LRRC28-206ENST00000558471 SBNO2Q9Y2G9 1366 aa17.64■□□□□ 0.41
LRRC28-206ENST00000558471 JCADQ9P266 1359 aa17.63■□□□□ 0.41
LRRC28-206ENST00000558471 PXDNQ92626 1479 aa17.63■□□□□ 0.41
LRRC28-206ENST00000558471 KRT28Q7Z3Y7 464 aa17.62■□□□□ 0.41
LRRC28-206ENST00000558471 TESK2Q96S53 571 aa17.62■□□□□ 0.41
LRRC28-206ENST00000558471 TOPAZ1Q8N9V7 1692 aa17.61■□□□□ 0.41
LRRC28-206ENST00000558471 PSME1Q06323 249 aa17.61■□□□□ 0.41
LRRC28-206ENST00000558471 NGDNQ8NEJ9 315 aaKnown RBP17.6■□□□□ 0.41
LRRC28-206ENST00000558471 SHPRHQ149N8 1683 aa17.6■□□□□ 0.41
LRRC28-206ENST00000558471 PLEKHG3A1L390 1219 aa17.59■□□□□ 0.41
LRRC28-206ENST00000558471 PPIP5K1Q6PFW1 1433 aa17.58■□□□□ 0.41
LRRC28-206ENST00000558471 PNPLA6Q8IY17 1366 aa17.57■□□□□ 0.4
LRRC28-206ENST00000558471 ACEP12821 1306 aa17.57■□□□□ 0.4
LRRC28-206ENST00000558471 CABP1Q9NZU7 370 aa17.57■□□□□ 0.4
LRRC28-206ENST00000558471 SPATA31A3Q5VYP0 1347 aa17.56■□□□□ 0.4
LRRC28-206ENST00000558471 POLR3AO14802 1390 aaPredicted RBP17.55■□□□□ 0.4
LRRC28-206ENST00000558471 SPATA31A6Q5VVP1 1343 aa17.55■□□□□ 0.4
LRRC28-206ENST00000558471 SLC24A1O60721 1099 aa17.55■□□□□ 0.4
LRRC28-206ENST00000558471 MED1Q15648 1581 aaPredicted RBP17.54■□□□□ 0.4
LRRC28-206ENST00000558471 EIF4G2P78344 907 aaKnown RBP eCLIP17.54■□□□□ 0.4
LRRC28-206ENST00000558471 TRPM3Q9HCF6 1732 aaPredicted RBP17.54■□□□□ 0.4
LRRC28-206ENST00000558471 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
LRRC28-206ENST00000558471 ATAD2Q6PL18 1390 aa17.53■□□□□ 0.4
LRRC28-206ENST00000558471 NUTM2BA6NNL0 878 aaPredicted RBP17.53■□□□□ 0.4
LRRC28-206ENST00000558471 NUTM2EB1AL46 878 aaPredicted RBP17.53■□□□□ 0.4
LRRC28-206ENST00000558471 HSPA5P11021 654 aaKnown RBP17.53■□□□□ 0.4
LRRC28-206ENST00000558471 NUTM2AQ8IVF1 878 aaPredicted RBP17.53■□□□□ 0.4
LRRC28-206ENST00000558471 PUS7Q96PZ0 661 aaKnown RBP17.53■□□□□ 0.4
LRRC28-206ENST00000558471 DISP3Q9P2K9 1392 aa17.53■□□□□ 0.4
LRRC28-206ENST00000558471 TMF1P82094 1093 aa17.52■□□□□ 0.4
LRRC28-206ENST00000558471 LRP6O75581 1613 aa17.51■□□□□ 0.39
LRRC28-206ENST00000558471 COL22A1Q8NFW1 1626 aaPredicted RBP17.51■□□□□ 0.39
LRRC28-206ENST00000558471 TNS3Q68CZ2 1445 aa17.51■□□□□ 0.39
LRRC28-206ENST00000558471 LMOD2Q6P5Q4 547 aa17.51■□□□□ 0.39
LRRC28-206ENST00000558471 PAK3O75914 559 aaPredicted RBP17.5■□□□□ 0.39
LRRC28-206ENST00000558471 ALS2Q96Q42 1657 aa17.49■□□□□ 0.39
LRRC28-206ENST00000558471 AKAP12Q02952 1782 aa17.49■□□□□ 0.39
LRRC28-206ENST00000558471 TMC1Q8TDI8 760 aa17.49■□□□□ 0.39
LRRC28-206ENST00000558471 SLC12A5Q9H2X9 1139 aa17.49■□□□□ 0.39
LRRC28-206ENST00000558471 ZNF692Q9BU19 519 aaPredicted RBP17.47■□□□□ 0.39
LRRC28-206ENST00000558471 ARHGEF10O15013 1369 aa17.47■□□□□ 0.39
LRRC28-206ENST00000558471 USP6P35125 1406 aa17.47■□□□□ 0.39
LRRC28-206ENST00000558471 CPSF1Q10570 1443 aaKnown RBP17.47■□□□□ 0.39
LRRC28-206ENST00000558471 PLEKHG5O94827 1062 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms