RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 ZNF772Q68DY9 489 aaPredicted RBP12.24□□□□□ -0.45
TPM1-213ENST00000558400 ROBO2Q9HCK4 1378 aa12.24□□□□□ -0.45
TPM1-213ENST00000558400 NRXN1Q9ULB1 1477 aa12.24□□□□□ -0.45
TPM1-213ENST00000558400 SRCAPQ6ZRS2 3230 aa12.23□□□□□ -0.45
TPM1-213ENST00000558400 TECPR2O15040 1411 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 YTHDC2Q9H6S0 1430 aaKnown RBP12.21□□□□□ -0.45
TPM1-213ENST00000558400 ADGRL3Q9HAR2 1447 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 SPATA31A6Q5VVP1 1343 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 XRN1Q8IZH2 1706 aaKnown RBP12.21□□□□□ -0.45
TPM1-213ENST00000558400 NEUROD1Q13562 356 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 WAPLQ7Z5K2 1190 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 SIN3AQ96ST3 1273 aa12.21□□□□□ -0.45
TPM1-213ENST00000558400 AHDC1Q5TGY3 1603 aaPredicted RBP12.2□□□□□ -0.46
TPM1-213ENST00000558400 L3MBTL2Q969R5 705 aa12.2□□□□□ -0.46
TPM1-213ENST00000558400 POGKQ9P215 609 aa12.2□□□□□ -0.46
TPM1-213ENST00000558400 MEX3CQ5U5Q3 659 aaKnown RBP12.19□□□□□ -0.46
TPM1-213ENST00000558400 BRINP3Q76B58 766 aa12.19□□□□□ -0.46
TPM1-213ENST00000558400 IFT172Q9UG01 1749 aa12.19□□□□□ -0.46
TPM1-213ENST00000558400 RXRBP28702 533 aa12.18□□□□□ -0.46
TPM1-213ENST00000558400 TRAK1Q9UPV9 953 aa12.18□□□□□ -0.46
TPM1-213ENST00000558400 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.17□□□□□ -0.46
TPM1-213ENST00000558400 PRAM1Q96QH2 718 aa12.17□□□□□ -0.46
TPM1-213ENST00000558400 RGS12O14924 1447 aa12.17□□□□□ -0.46
TPM1-213ENST00000558400 LRRC59Q96AG4 307 aaKnown RBP12.16□□□□□ -0.46
TPM1-213ENST00000558400 PCGF6Q9BYE7 350 aa12.16□□□□□ -0.46
TPM1-213ENST00000558400 MST1RQ04912 1400 aa12.16□□□□□ -0.46
TPM1-213ENST00000558400 LAMC1P11047 1609 aa12.15□□□□□ -0.46
TPM1-213ENST00000558400 ESCO1Q5FWF5 840 aa12.15□□□□□ -0.46
TPM1-213ENST00000558400 C1orf167Q5SNV9 1468 aa12.14□□□□□ -0.47
TPM1-213ENST00000558400 SAFB2Q14151 953 aaKnown RBP eCLIP12.13□□□□□ -0.47
TPM1-213ENST00000558400 ORAI2Q96SN7 254 aa12.13□□□□□ -0.47
TPM1-213ENST00000558400 PLEKHH1Q9ULM0 1364 aa12.13□□□□□ -0.47
TPM1-213ENST00000558400 CLSPNQ9HAW4 1339 aa12.12□□□□□ -0.47
TPM1-213ENST00000558400 DLC1Q96QB1 1528 aa12.12□□□□□ -0.47
TPM1-213ENST00000558400 NBPF1Q3BBV0 1214 aa12.12□□□□□ -0.47
TPM1-213ENST00000558400 NPHP3Q7Z494 1330 aa12.11□□□□□ -0.47
TPM1-213ENST00000558400 ASXL1Q8IXJ9 1541 aa12.11□□□□□ -0.47
TPM1-213ENST00000558400 ADGRB1O14514 1584 aa12.11□□□□□ -0.47
TPM1-213ENST00000558400 TONSLQ96HA7 1378 aa12.11□□□□□ -0.47
TPM1-213ENST00000558400 TIMELESSQ9UNS1 1208 aa12.11□□□□□ -0.47
TPM1-213ENST00000558400 NUTM2FA1L443 756 aa12.1□□□□□ -0.47
TPM1-213ENST00000558400 WASLO00401 505 aaPredicted RBP12.1□□□□□ -0.47
TPM1-213ENST00000558400 NCBP3Q53F19 620 aaKnown RBP12.1□□□□□ -0.47
TPM1-213ENST00000558400 AFF2P51816 1311 aa12.1□□□□□ -0.47
TPM1-213ENST00000558400 SOS2Q07890 1332 aaPredicted RBP12.1□□□□□ -0.47
TPM1-213ENST00000558400 KNDC1Q76NI1 1749 aa12.09□□□□□ -0.47
TPM1-213ENST00000558400 EIF3AQ14152 1382 aaKnown RBP12.09□□□□□ -0.47
TPM1-213ENST00000558400 FOXO3O43524 673 aa12.09□□□□□ -0.47
TPM1-213ENST00000558400 MINK1Q8N4C8 1332 aaPredicted RBP12.09□□□□□ -0.47
TPM1-213ENST00000558400 NHSL1Q5SYE7 1610 aa12.08□□□□□ -0.48
TPM1-213ENST00000558400 CACNB1Q02641 598 aaPredicted RBP12.08□□□□□ -0.48
TPM1-213ENST00000558400 PSME1Q06323 249 aa12.08□□□□□ -0.48
TPM1-213ENST00000558400 HIRIP3Q9BW71 556 aaPredicted RBP12.08□□□□□ -0.48
TPM1-213ENST00000558400 PHF8Q9UPP1 1060 aa12.08□□□□□ -0.48
TPM1-213ENST00000558400 CDC42BPGQ6DT37 1551 aa12.08□□□□□ -0.48
TPM1-213ENST00000558400 LRP5O75197 1615 aa12.08□□□□□ -0.48
TPM1-213ENST00000558400 ATAD2Q6PL18 1390 aa12.07□□□□□ -0.48
TPM1-213ENST00000558400 NPM3O75607 178 aaKnown RBP12.07□□□□□ -0.48
TPM1-213ENST00000558400 NALCNQ8IZF0 1738 aa12.07□□□□□ -0.48
TPM1-213ENST00000558400 DDX17Q92841 729 aaKnown RBP12.07□□□□□ -0.48
TPM1-213ENST00000558400 ZRANB1Q9UGI0 708 aa12.07□□□□□ -0.48
TPM1-213ENST00000558400 ROCK2O75116 1388 aaKnown RBP12.06□□□□□ -0.48
TPM1-213ENST00000558400 NBPF8Q3BBV2 869 aa12.06□□□□□ -0.48
TPM1-213ENST00000558400 RNF39Q9H2S5 420 aa12.06□□□□□ -0.48
TPM1-213ENST00000558400 CENPJQ9HC77 1338 aaPredicted RBP12.06□□□□□ -0.48
TPM1-213ENST00000558400 KIAA1210Q9ULL0 1709 aa12.06□□□□□ -0.48
TPM1-213ENST00000558400 ANKARQ7Z5J8 1434 aa12.05□□□□□ -0.48
TPM1-213ENST00000558400 NUTM2BA6NNL0 878 aaPredicted RBP12.05□□□□□ -0.48
TPM1-213ENST00000558400 NUTM2EB1AL46 878 aaPredicted RBP12.05□□□□□ -0.48
TPM1-213ENST00000558400 RBM6P78332 1123 aaKnown RBP12.05□□□□□ -0.48
TPM1-213ENST00000558400 KRT28Q7Z3Y7 464 aa12.05□□□□□ -0.48
TPM1-213ENST00000558400 NUTM2AQ8IVF1 878 aaPredicted RBP12.05□□□□□ -0.48
TPM1-213ENST00000558400 CDK19Q9BWU1 502 aa12.05□□□□□ -0.48
TPM1-213ENST00000558400 SLC24A1O60721 1099 aa12.04□□□□□ -0.48
TPM1-213ENST00000558400 NUDT16Q96DE0 195 aaKnown RBP12.04□□□□□ -0.48
TPM1-213ENST00000558400 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
TPM1-213ENST00000558400 CCDC61Q9Y6R9 512 aa12.04□□□□□ -0.48
TPM1-213ENST00000558400 CCER1Q8TC90 406 aaPredicted RBP12.03□□□□□ -0.48
TPM1-213ENST00000558400 NGDNQ8NEJ9 315 aaKnown RBP12.02□□□□□ -0.49
TPM1-213ENST00000558400 PMFBP1Q8TBY8 1022 aa12.02□□□□□ -0.49
TPM1-213ENST00000558400 GPRASP1Q5JY77 1395 aa12.02□□□□□ -0.49
TPM1-213ENST00000558400 SRPK2P78362 688 aaKnown RBP12.01□□□□□ -0.49
TPM1-213ENST00000558400 EVC2Q86UK5 1308 aa12.01□□□□□ -0.49
TPM1-213ENST00000558400 PNPLA6Q8IY17 1366 aa12.01□□□□□ -0.49
TPM1-213ENST00000558400 PLEKHG3A1L390 1219 aa12□□□□□ -0.49
TPM1-213ENST00000558400 XPCQ01831 940 aaPredicted RBP12□□□□□ -0.49
TPM1-213ENST00000558400 QTRT2Q9H974 415 aaKnown RBP12□□□□□ -0.49
TPM1-213ENST00000558400 SPATA31A3Q5VYP0 1347 aa12□□□□□ -0.49
TPM1-213ENST00000558400 EP400Q96L91 3159 aa12□□□□□ -0.49
TPM1-213ENST00000558400 NGLY1Q96IV0 654 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 C8orf37Q96NL8 207 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 PRR36Q9H6K5 1346 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 SBNO1A3KN83 1393 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 ADGRB2O60241 1585 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 FMN2Q9NZ56 1722 aa11.99□□□□□ -0.49
TPM1-213ENST00000558400 TULP4Q9NRJ4 1543 aa11.97□□□□□ -0.49
TPM1-213ENST00000558400 PXDNQ92626 1479 aa11.97□□□□□ -0.49
TPM1-213ENST00000558400 LMOD2Q6P5Q4 547 aa11.97□□□□□ -0.49
TPM1-213ENST00000558400 ARHGEF10O15013 1369 aa11.96□□□□□ -0.49
TPM1-213ENST00000558400 ADAMTS2O95450 1211 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms