RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 NALCNQ8IZF0 1738 aa19.48■□□□□ 0.71
SHMT2-228ENST00000557302 NBPF1Q3BBV0 1214 aa19.47■□□□□ 0.71
SHMT2-228ENST00000557302 PRAM1Q96QH2 718 aa19.47■□□□□ 0.71
SHMT2-228ENST00000557302 POGKQ9P215 609 aa19.46■□□□□ 0.71
SHMT2-228ENST00000557302 NBPF8Q3BBV2 869 aa19.44■□□□□ 0.7
SHMT2-228ENST00000557302 SAFB2Q14151 953 aaKnown RBP eCLIP19.43■□□□□ 0.7
SHMT2-228ENST00000557302 MST1RQ04912 1400 aa19.42■□□□□ 0.7
SHMT2-228ENST00000557302 TIMELESSQ9UNS1 1208 aa19.42■□□□□ 0.7
SHMT2-228ENST00000557302 ROCK2O75116 1388 aaKnown RBP19.42■□□□□ 0.7
SHMT2-228ENST00000557302 CDC42BPGQ6DT37 1551 aa19.41■□□□□ 0.7
SHMT2-228ENST00000557302 TRPM1Q7Z4N2 1603 aa19.41■□□□□ 0.7
SHMT2-228ENST00000557302 HSPA1LP34931 641 aa19.41■□□□□ 0.7
SHMT2-228ENST00000557302 ROBO1Q9Y6N7 1651 aa19.4■□□□□ 0.7
SHMT2-228ENST00000557302 ILDR2Q71H61 639 aa19.38■□□□□ 0.69
SHMT2-228ENST00000557302 ARHGEF28Q8N1W1 1705 aaKnown RBP19.37■□□□□ 0.69
SHMT2-228ENST00000557302 C1orf167Q5SNV9 1468 aa19.37■□□□□ 0.69
SHMT2-228ENST00000557302 BRINP3Q76B58 766 aa19.37■□□□□ 0.69
SHMT2-228ENST00000557302 RALGAPBQ86X10 1494 aa19.36■□□□□ 0.69
SHMT2-228ENST00000557302 GPRASP1Q5JY77 1395 aa19.36■□□□□ 0.69
SHMT2-228ENST00000557302 MINK1Q8N4C8 1332 aaPredicted RBP19.35■□□□□ 0.69
SHMT2-228ENST00000557302 HIRIP3Q9BW71 556 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-228ENST00000557302 CARD11Q9BXL7 1154 aa19.34■□□□□ 0.69
SHMT2-228ENST00000557302 ADGRB2O60241 1585 aa19.34■□□□□ 0.69
SHMT2-228ENST00000557302 CENPJQ9HC77 1338 aaPredicted RBP19.33■□□□□ 0.69
SHMT2-228ENST00000557302 NUTM2FA1L443 756 aa19.33■□□□□ 0.68
SHMT2-228ENST00000557302 EIF3AQ14152 1382 aaKnown RBP19.32■□□□□ 0.68
SHMT2-228ENST00000557302 FMN2Q9NZ56 1722 aa19.31■□□□□ 0.68
SHMT2-228ENST00000557302 ORAI2Q96SN7 254 aa19.31■□□□□ 0.68
SHMT2-228ENST00000557302 WASLO00401 505 aaPredicted RBP19.3■□□□□ 0.68
SHMT2-228ENST00000557302 ESCO1Q5FWF5 840 aa19.3■□□□□ 0.68
SHMT2-228ENST00000557302 AHDC1Q5TGY3 1603 aaPredicted RBP19.29■□□□□ 0.68
SHMT2-228ENST00000557302 SOCS7O14512 581 aa19.29■□□□□ 0.68
SHMT2-228ENST00000557302 MED1Q15648 1581 aaPredicted RBP19.28■□□□□ 0.68
SHMT2-228ENST00000557302 ANKARQ7Z5J8 1434 aa19.27■□□□□ 0.68
SHMT2-228ENST00000557302 PHLPP1O60346 1717 aa19.27■□□□□ 0.68
SHMT2-228ENST00000557302 TULP4Q9NRJ4 1543 aa19.25■□□□□ 0.67
SHMT2-228ENST00000557302 QRICH2Q9H0J4 1663 aa19.24■□□□□ 0.67
SHMT2-228ENST00000557302 DDX17Q92841 729 aaKnown RBP19.24■□□□□ 0.67
SHMT2-228ENST00000557302 CDK19Q9BWU1 502 aa19.24■□□□□ 0.67
SHMT2-228ENST00000557302 COL16A1Q07092 1604 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-228ENST00000557302 NHSL1Q5SYE7 1610 aa19.24■□□□□ 0.67
SHMT2-228ENST00000557302 PHF8Q9UPP1 1060 aa19.23■□□□□ 0.67
SHMT2-228ENST00000557302 NPHP3Q7Z494 1330 aa19.23■□□□□ 0.67
SHMT2-228ENST00000557302 PRR36Q9H6K5 1346 aa19.23■□□□□ 0.67
SHMT2-228ENST00000557302 USP32Q8NFA0 1604 aa19.22■□□□□ 0.67
SHMT2-228ENST00000557302 JCADQ9P266 1359 aa19.21■□□□□ 0.67
SHMT2-228ENST00000557302 FOXO3O43524 673 aa19.21■□□□□ 0.67
SHMT2-228ENST00000557302 KIF1AQ12756 1690 aa19.2■□□□□ 0.66
SHMT2-228ENST00000557302 SRPK2P78362 688 aaKnown RBP19.2■□□□□ 0.66
SHMT2-228ENST00000557302 NUDT16Q96DE0 195 aaKnown RBP19.2■□□□□ 0.66
SHMT2-228ENST00000557302 ATP7BP35670 1465 aa19.2■□□□□ 0.66
SHMT2-228ENST00000557302 SOS2Q07890 1332 aaPredicted RBP19.2■□□□□ 0.66
SHMT2-228ENST00000557302 EVC2Q86UK5 1308 aa19.2■□□□□ 0.66
SHMT2-228ENST00000557302 LRRC59Q96AG4 307 aaKnown RBP19.19■□□□□ 0.66
SHMT2-228ENST00000557302 SBNO2Q9Y2G9 1366 aa19.19■□□□□ 0.66
SHMT2-228ENST00000557302 PMFBP1Q8TBY8 1022 aa19.18■□□□□ 0.66
SHMT2-228ENST00000557302 RGPD8O14715 1765 aaPredicted RBP19.18■□□□□ 0.66
SHMT2-228ENST00000557302 USP47Q96K76 1375 aa19.18■□□□□ 0.66
SHMT2-228ENST00000557302 XPCQ01831 940 aaPredicted RBP19.17■□□□□ 0.66
SHMT2-228ENST00000557302 CABP2Q9NPB3 220 aa19.17■□□□□ 0.66
SHMT2-228ENST00000557302 PXDNQ92626 1479 aa19.16■□□□□ 0.66
SHMT2-228ENST00000557302 CCDC61Q9Y6R9 512 aa19.16■□□□□ 0.66
SHMT2-228ENST00000557302 ST20-MTHFSA0A0A6YYL1 179 aa19.15■□□□□ 0.66
SHMT2-228ENST00000557302 KRT28Q7Z3Y7 464 aa19.14■□□□□ 0.65
SHMT2-228ENST00000557302 NGDNQ8NEJ9 315 aaKnown RBP19.14■□□□□ 0.65
SHMT2-228ENST00000557302 ITSN1Q15811 1721 aa19.14■□□□□ 0.65
SHMT2-228ENST00000557302 PSME1Q06323 249 aa19.13■□□□□ 0.65
SHMT2-228ENST00000557302 PNPLA6Q8IY17 1366 aa19.12■□□□□ 0.65
SHMT2-228ENST00000557302 SPATA31A6Q5VVP1 1343 aa19.12■□□□□ 0.65
SHMT2-228ENST00000557302 SHPRHQ149N8 1683 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 PPIP5K1Q6PFW1 1433 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 PLEKHG3A1L390 1219 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 SLC24A1O60721 1099 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 TESK2Q96S53 571 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 TOPAZ1Q8N9V7 1692 aa19.11■□□□□ 0.65
SHMT2-228ENST00000557302 ATAD2Q6PL18 1390 aa19.1■□□□□ 0.65
SHMT2-228ENST00000557302 SBNO1A3KN83 1393 aa19.08■□□□□ 0.65
SHMT2-228ENST00000557302 POLR3AO14802 1390 aaPredicted RBP19.08■□□□□ 0.65
SHMT2-228ENST00000557302 ACEP12821 1306 aa19.08■□□□□ 0.65
SHMT2-228ENST00000557302 SPATA31A3Q5VYP0 1347 aa19.08■□□□□ 0.65
SHMT2-228ENST00000557302 CABP1Q9NZU7 370 aa19.08■□□□□ 0.64
SHMT2-228ENST00000557302 TNS3Q68CZ2 1445 aa19.08■□□□□ 0.64
SHMT2-228ENST00000557302 NUTM2BA6NNL0 878 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-228ENST00000557302 NUTM2EB1AL46 878 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-228ENST00000557302 NUTM2AQ8IVF1 878 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-228ENST00000557302 EIF4G2P78344 907 aaKnown RBP eCLIP19.05■□□□□ 0.64
SHMT2-228ENST00000557302 TMF1P82094 1093 aa19.05■□□□□ 0.64
SHMT2-228ENST00000557302 LMOD2Q6P5Q4 547 aa19.05■□□□□ 0.64
SHMT2-228ENST00000557302 PUS7Q96PZ0 661 aaKnown RBP19.05■□□□□ 0.64
SHMT2-228ENST00000557302 LRP6O75581 1613 aa19.04■□□□□ 0.64
SHMT2-228ENST00000557302 ARHGEF10O15013 1369 aa19.04■□□□□ 0.64
SHMT2-228ENST00000557302 PAK3O75914 559 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-228ENST00000557302 MEX3CQ5U5Q3 659 aaKnown RBP19.03■□□□□ 0.64
SHMT2-228ENST00000557302 COL22A1Q8NFW1 1626 aaPredicted RBP19.03■□□□□ 0.64
SHMT2-228ENST00000557302 HSPA5P11021 654 aaKnown RBP19.02■□□□□ 0.64
SHMT2-228ENST00000557302 TRPM3Q9HCF6 1732 aaPredicted RBP19.02■□□□□ 0.63
SHMT2-228ENST00000557302 TMC1Q8TDI8 760 aa19.01■□□□□ 0.63
SHMT2-228ENST00000557302 CDCA8Q53HL2 280 aa19■□□□□ 0.63
SHMT2-228ENST00000557302 BRD4O60885 1362 aaPredicted RBP18.99■□□□□ 0.63
SHMT2-228ENST00000557302 ZNF692Q9BU19 519 aaPredicted RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms