RNA–Protein interactions for RNA: ENST00000556975.5

TMEM260-214, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-214ENST00000556975 LRRC59Q96AG4 307 aaKnown RBP33.26■■■□□ 2.91
TMEM260-214ENST00000556975 LAMC1P11047 1609 aa33.25■■■□□ 2.91
TMEM260-214ENST00000556975 CDC42BPGQ6DT37 1551 aa33.25■■■□□ 2.91
TMEM260-214ENST00000556975 STAC3Q96MF2 364 aa33.23■■■□□ 2.91
TMEM260-214ENST00000556975 ORAI2Q96SN7 254 aa33.23■■■□□ 2.91
TMEM260-214ENST00000556975 DHX57Q6P158 1386 aaKnown RBP33.22■■■□□ 2.91
TMEM260-214ENST00000556975 DDX17Q92841 729 aaKnown RBP33.22■■■□□ 2.91
TMEM260-214ENST00000556975 LRP6O75581 1613 aa33.21■■■□□ 2.91
TMEM260-214ENST00000556975 PLEKHH1Q9ULM0 1364 aa33.2■■■□□ 2.9
TMEM260-214ENST00000556975 DCAF11Q8TEB1 546 aa33.17■■■□□ 2.9
TMEM260-214ENST00000556975 SOS2Q07890 1332 aaPredicted RBP33.17■■■□□ 2.9
TMEM260-214ENST00000556975 KDM2AQ9Y2K7 1162 aa33.13■■■□□ 2.89
TMEM260-214ENST00000556975 PNPLA6Q8IY17 1366 aa33.12■■■□□ 2.89
TMEM260-214ENST00000556975 ESCO1Q5FWF5 840 aa33.12■■■□□ 2.89
TMEM260-214ENST00000556975 MEX3CQ5U5Q3 659 aaKnown RBP33.12■■■□□ 2.89
TMEM260-214ENST00000556975 ADGRB1O14514 1584 aa33.1■■■□□ 2.89
TMEM260-214ENST00000556975 DLC1Q96QB1 1528 aa33.09■■■□□ 2.89
TMEM260-214ENST00000556975 NUTM2BA6NNL0 878 aaPredicted RBP33.09■■■□□ 2.89
TMEM260-214ENST00000556975 NUTM2EB1AL46 878 aaPredicted RBP33.09■■■□□ 2.89
TMEM260-214ENST00000556975 NUTM2AQ8IVF1 878 aaPredicted RBP33.09■■■□□ 2.89
TMEM260-214ENST00000556975 NPHP3Q7Z494 1330 aa33.07■■■□□ 2.88
TMEM260-214ENST00000556975 FMN2Q9NZ56 1722 aa33.06■■■□□ 2.88
TMEM260-214ENST00000556975 ZNF772Q68DY9 489 aaPredicted RBP33.06■■■□□ 2.88
TMEM260-214ENST00000556975 PRAM1Q96QH2 718 aa33.06■■■□□ 2.88
TMEM260-214ENST00000556975 NUTM2FA1L443 756 aa33.04■■■□□ 2.88
TMEM260-214ENST00000556975 FOXO3O43524 673 aa33.01■■■□□ 2.87
TMEM260-214ENST00000556975 POGKQ9P215 609 aa33.01■■■□□ 2.87
TMEM260-214ENST00000556975 PXDNQ92626 1479 aa32.99■■■□□ 2.87
TMEM260-214ENST00000556975 TRAK1Q9UPV9 953 aa32.99■■■□□ 2.87
TMEM260-214ENST00000556975 SAFB2Q14151 953 aaKnown RBP eCLIP32.98■■■□□ 2.87
TMEM260-214ENST00000556975 AFF2P51816 1311 aa32.94■■■□□ 2.86
TMEM260-214ENST00000556975 COL22A1Q8NFW1 1626 aaPredicted RBP32.94■■■□□ 2.86
TMEM260-214ENST00000556975 KIF1AQ12756 1690 aa32.94■■■□□ 2.86
TMEM260-214ENST00000556975 ADGRB2O60241 1585 aa32.92■■■□□ 2.86
TMEM260-214ENST00000556975 XPCQ01831 940 aaPredicted RBP32.91■■■□□ 2.86
TMEM260-214ENST00000556975 RGPD8O14715 1765 aaPredicted RBP32.91■■■□□ 2.86
TMEM260-214ENST00000556975 C8orf37Q96NL8 207 aa32.9■■■□□ 2.86
TMEM260-214ENST00000556975 PHF8Q9UPP1 1060 aa32.9■■■□□ 2.86
TMEM260-214ENST00000556975 ANKARQ7Z5J8 1434 aa32.88■■■□□ 2.85
TMEM260-214ENST00000556975 ADAMTS2O95450 1211 aa32.87■■■□□ 2.85
TMEM260-214ENST00000556975 KIAA1210Q9ULL0 1709 aa32.87■■■□□ 2.85
TMEM260-214ENST00000556975 KRT28Q7Z3Y7 464 aa32.86■■■□□ 2.85
TMEM260-214ENST00000556975 SPATA31A3Q5VYP0 1347 aa32.85■■■□□ 2.85
TMEM260-214ENST00000556975 RXRBP28702 533 aa32.85■■■□□ 2.85
TMEM260-214ENST00000556975 NGLY1Q96IV0 654 aa32.85■■■□□ 2.85
TMEM260-214ENST00000556975 MINK1Q8N4C8 1332 aaPredicted RBP32.84■■■□□ 2.85
TMEM260-214ENST00000556975 HIRIP3Q9BW71 556 aaPredicted RBP32.83■■■□□ 2.85
TMEM260-214ENST00000556975 USP32Q8NFA0 1604 aa32.83■■■□□ 2.85
TMEM260-214ENST00000556975 WASLO00401 505 aaPredicted RBP32.82■■■□□ 2.84
TMEM260-214ENST00000556975 ARHGEF28Q8N1W1 1705 aaKnown RBP32.82■■■□□ 2.84
TMEM260-214ENST00000556975 EIF3AQ14152 1382 aaKnown RBP32.82■■■□□ 2.84
TMEM260-214ENST00000556975 PSME1Q06323 249 aa32.81■■■□□ 2.84
TMEM260-214ENST00000556975 FNBP4Q8N3X1 1017 aaPredicted RBP32.8■■■□□ 2.84
TMEM260-214ENST00000556975 QTRT2Q9H974 415 aaKnown RBP32.8■■■□□ 2.84
TMEM260-214ENST00000556975 CDK12Q9NYV4 1490 aaPredicted RBP32.79■■■□□ 2.84
TMEM260-214ENST00000556975 NBPF1Q3BBV0 1214 aa32.77■■■□□ 2.84
TMEM260-214ENST00000556975 SBNO1A3KN83 1393 aa32.77■■■□□ 2.84
TMEM260-214ENST00000556975 TULP4Q9NRJ4 1543 aa32.77■■■□□ 2.84
TMEM260-214ENST00000556975 PRR36Q9H6K5 1346 aa32.77■■■□□ 2.84
TMEM260-214ENST00000556975 L3MBTL2Q969R5 705 aa32.76■■■□□ 2.83
TMEM260-214ENST00000556975 RBM6P78332 1123 aaKnown RBP32.75■■■□□ 2.83
TMEM260-214ENST00000556975 PMFBP1Q8TBY8 1022 aa32.75■■■□□ 2.83
TMEM260-214ENST00000556975 SIN3AQ96ST3 1273 aa32.75■■■□□ 2.83
TMEM260-214ENST00000556975 USP21Q9UK80 565 aa32.74■■■□□ 2.83
TMEM260-214ENST00000556975 TNS3Q68CZ2 1445 aa32.74■■■□□ 2.83
TMEM260-214ENST00000556975 MARF1Q9Y4F3 1742 aaKnown RBP32.71■■■□□ 2.83
TMEM260-214ENST00000556975 UPF1Q92900 1129 aaKnown RBP eCLIP32.7■■■□□ 2.83
TMEM260-214ENST00000556975 TRPC5Q9UL62 973 aaPredicted RBP32.69■■■□□ 2.82
TMEM260-214ENST00000556975 ARHGEF10O15013 1369 aa32.68■■■□□ 2.82
TMEM260-214ENST00000556975 NEUROD1Q13562 356 aa32.66■■■□□ 2.82
TMEM260-214ENST00000556975 NUDT16Q96DE0 195 aaKnown RBP32.65■■■□□ 2.82
TMEM260-214ENST00000556975 CDK19Q9BWU1 502 aa32.65■■■□□ 2.82
TMEM260-214ENST00000556975 GPRASP1Q5JY77 1395 aa32.65■■■□□ 2.82
TMEM260-214ENST00000556975 BCL9LQ86UU0 1499 aa32.65■■■□□ 2.82
TMEM260-214ENST00000556975 ATRNO75882 1429 aa32.64■■■□□ 2.82
TMEM260-214ENST00000556975 ATP7BP35670 1465 aa32.64■■■□□ 2.82
TMEM260-214ENST00000556975 TRPM3Q9HCF6 1732 aaPredicted RBP32.63■■■□□ 2.81
TMEM260-214ENST00000556975 TRIM26Q12899 539 aaPredicted RBP32.62■■■□□ 2.81
TMEM260-214ENST00000556975 NGDNQ8NEJ9 315 aaKnown RBP32.61■■■□□ 2.81
TMEM260-214ENST00000556975 RGS12O14924 1447 aa32.6■■■□□ 2.81
TMEM260-214ENST00000556975 ITSN1Q15811 1721 aa32.6■■■□□ 2.81
TMEM260-214ENST00000556975 LMOD2Q6P5Q4 547 aa32.6■■■□□ 2.81
TMEM260-214ENST00000556975 CENPJQ9HC77 1338 aaPredicted RBP32.59■■■□□ 2.81
TMEM260-214ENST00000556975 CABLES1Q8TDN4 633 aa32.59■■■□□ 2.81
TMEM260-214ENST00000556975 SLIT2O94813 1529 aa32.58■■■□□ 2.81
TMEM260-214ENST00000556975 HAP1P54257 671 aaPredicted RBP32.57■■■□□ 2.8
TMEM260-214ENST00000556975 CCDC61Q9Y6R9 512 aa32.57■■■□□ 2.8
TMEM260-214ENST00000556975 ALS2Q96Q42 1657 aa32.56■■■□□ 2.8
TMEM260-214ENST00000556975 TRPM1Q7Z4N2 1603 aa32.55■■■□□ 2.8
TMEM260-214ENST00000556975 UNC5CLQ8IV45 518 aa32.55■■■□□ 2.8
TMEM260-214ENST00000556975 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.54■■■□□ 2.8
TMEM260-214ENST00000556975 ABCA3Q99758 1704 aa32.54■■■□□ 2.8
TMEM260-214ENST00000556975 PLEKHG3A1L390 1219 aa32.53■■■□□ 2.8
TMEM260-214ENST00000556975 GJD4Q96KN9 370 aaPredicted RBP32.52■■■□□ 2.8
TMEM260-214ENST00000556975 POLR3AO14802 1390 aaPredicted RBP32.52■■■□□ 2.8
TMEM260-214ENST00000556975 TOPAZ1Q8N9V7 1692 aa32.51■■■□□ 2.79
TMEM260-214ENST00000556975 PAK3O75914 559 aaPredicted RBP32.48■■■□□ 2.79
TMEM260-214ENST00000556975 PLEKHG5O94827 1062 aa32.48■■■□□ 2.79
TMEM260-214ENST00000556975 NBPF8Q3BBV2 869 aa32.48■■■□□ 2.79
TMEM260-214ENST00000556975 ACEP12821 1306 aa32.48■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms