RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 RGS17Q9UGC6 210 aaPredicted RBP11.83□□□□□ -0.52
VTI1B-206ENST00000556461 NUTM2FA1L443 756 aa11.82□□□□□ -0.52
VTI1B-206ENST00000556461 SAFB2Q14151 953 aaKnown RBP eCLIP11.82□□□□□ -0.52
VTI1B-206ENST00000556461 SIRT1Q96EB6 747 aa11.82□□□□□ -0.52
VTI1B-206ENST00000556461 CDC42BPGQ6DT37 1551 aa11.81□□□□□ -0.52
VTI1B-206ENST00000556461 TRIM26Q12899 539 aaPredicted RBP11.81□□□□□ -0.52
VTI1B-206ENST00000556461 PRAM1Q96QH2 718 aa11.81□□□□□ -0.52
VTI1B-206ENST00000556461 TRAK1Q9UPV9 953 aa11.81□□□□□ -0.52
VTI1B-206ENST00000556461 LAMC1P11047 1609 aa11.81□□□□□ -0.52
VTI1B-206ENST00000556461 LRP6O75581 1613 aa11.8□□□□□ -0.52
VTI1B-206ENST00000556461 NHSL1Q5SYE7 1610 aa11.8□□□□□ -0.52
VTI1B-206ENST00000556461 PHF23Q9BUL5 403 aaPredicted RBP11.8□□□□□ -0.52
VTI1B-206ENST00000556461 STAC3Q96MF2 364 aa11.79□□□□□ -0.52
VTI1B-206ENST00000556461 DLC1Q96QB1 1528 aa11.79□□□□□ -0.52
VTI1B-206ENST00000556461 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
VTI1B-206ENST00000556461 NBPF1Q3BBV0 1214 aa11.78□□□□□ -0.52
VTI1B-206ENST00000556461 ESCO1Q5FWF5 840 aa11.78□□□□□ -0.52
VTI1B-206ENST00000556461 L3MBTL2Q969R5 705 aa11.77□□□□□ -0.53
VTI1B-206ENST00000556461 POGKQ9P215 609 aa11.77□□□□□ -0.53
VTI1B-206ENST00000556461 SOS2Q07890 1332 aaPredicted RBP11.77□□□□□ -0.53
VTI1B-206ENST00000556461 NUTM2BA6NNL0 878 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-206ENST00000556461 NUTM2EB1AL46 878 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-206ENST00000556461 XPCQ01831 940 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-206ENST00000556461 NUTM2AQ8IVF1 878 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-206ENST00000556461 HIRIP3Q9BW71 556 aaPredicted RBP11.76□□□□□ -0.53
VTI1B-206ENST00000556461 FMN2Q9NZ56 1722 aa11.76□□□□□ -0.53
VTI1B-206ENST00000556461 SPATA31A6Q5VVP1 1343 aa11.76□□□□□ -0.53
VTI1B-206ENST00000556461 PNPLA6Q8IY17 1366 aa11.76□□□□□ -0.53
VTI1B-206ENST00000556461 SHPRHQ149N8 1683 aa11.75□□□□□ -0.53
VTI1B-206ENST00000556461 FOXO3O43524 673 aa11.75□□□□□ -0.53
VTI1B-206ENST00000556461 POTEAQ6S8J7 498 aa11.75□□□□□ -0.53
VTI1B-206ENST00000556461 LRRC59Q96AG4 307 aaKnown RBP11.75□□□□□ -0.53
VTI1B-206ENST00000556461 MINK1Q8N4C8 1332 aaPredicted RBP11.75□□□□□ -0.53
VTI1B-206ENST00000556461 PXDNQ92626 1479 aa11.74□□□□□ -0.53
VTI1B-206ENST00000556461 SOCS7O14512 581 aa11.73□□□□□ -0.53
VTI1B-206ENST00000556461 NPHP3Q7Z494 1330 aa11.72□□□□□ -0.53
VTI1B-206ENST00000556461 PRR36Q9H6K5 1346 aa11.72□□□□□ -0.53
VTI1B-206ENST00000556461 USP32Q8NFA0 1604 aa11.71□□□□□ -0.53
VTI1B-206ENST00000556461 ADGRB2O60241 1585 aa11.71□□□□□ -0.53
VTI1B-206ENST00000556461 MEX3CQ5U5Q3 659 aaKnown RBP11.71□□□□□ -0.53
VTI1B-206ENST00000556461 PHF8Q9UPP1 1060 aa11.71□□□□□ -0.53
VTI1B-206ENST00000556461 ARHGEF28Q8N1W1 1705 aaKnown RBP11.71□□□□□ -0.54
VTI1B-206ENST00000556461 KIAA1210Q9ULL0 1709 aa11.71□□□□□ -0.54
VTI1B-206ENST00000556461 RGPD8O14715 1765 aaPredicted RBP11.7□□□□□ -0.54
VTI1B-206ENST00000556461 WASLO00401 505 aaPredicted RBP11.7□□□□□ -0.54
VTI1B-206ENST00000556461 NBPF8Q3BBV2 869 aa11.7□□□□□ -0.54
VTI1B-206ENST00000556461 PMFBP1Q8TBY8 1022 aa11.7□□□□□ -0.54
VTI1B-206ENST00000556461 ADAMTS2O95450 1211 aa11.69□□□□□ -0.54
VTI1B-206ENST00000556461 KRT28Q7Z3Y7 464 aa11.69□□□□□ -0.54
VTI1B-206ENST00000556461 ANKARQ7Z5J8 1434 aa11.69□□□□□ -0.54
VTI1B-206ENST00000556461 AFF2P51816 1311 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 SPATA31A3Q5VYP0 1347 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 TULP4Q9NRJ4 1543 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 C8orf37Q96NL8 207 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 CDK19Q9BWU1 502 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 KIF1AQ12756 1690 aa11.67□□□□□ -0.54
VTI1B-206ENST00000556461 COL22A1Q8NFW1 1626 aaPredicted RBP11.66□□□□□ -0.54
VTI1B-206ENST00000556461 ATP7BP35670 1465 aa11.65□□□□□ -0.54
VTI1B-206ENST00000556461 TRPM1Q7Z4N2 1603 aa11.65□□□□□ -0.54
VTI1B-206ENST00000556461 NUDT16Q96DE0 195 aaKnown RBP11.65□□□□□ -0.54
VTI1B-206ENST00000556461 CENPJQ9HC77 1338 aaPredicted RBP11.64□□□□□ -0.55
VTI1B-206ENST00000556461 TNS3Q68CZ2 1445 aa11.64□□□□□ -0.55
VTI1B-206ENST00000556461 PLEKHG5O94827 1062 aa11.64□□□□□ -0.55
VTI1B-206ENST00000556461 PSME1Q06323 249 aa11.64□□□□□ -0.55
VTI1B-206ENST00000556461 ZNF772Q68DY9 489 aaPredicted RBP11.64□□□□□ -0.55
VTI1B-206ENST00000556461 PCGF6Q9BYE7 350 aa11.64□□□□□ -0.55
VTI1B-206ENST00000556461 ROCK2O75116 1388 aaKnown RBP11.64□□□□□ -0.55
VTI1B-206ENST00000556461 EIF3AQ14152 1382 aaKnown RBP11.64□□□□□ -0.55
VTI1B-206ENST00000556461 CABLES1Q8TDN4 633 aa11.63□□□□□ -0.55
VTI1B-206ENST00000556461 NGLY1Q96IV0 654 aa11.63□□□□□ -0.55
VTI1B-206ENST00000556461 SBNO1A3KN83 1393 aa11.63□□□□□ -0.55
VTI1B-206ENST00000556461 TONSLQ96HA7 1378 aa11.63□□□□□ -0.55
VTI1B-206ENST00000556461 LMOD2Q6P5Q4 547 aa11.62□□□□□ -0.55
VTI1B-206ENST00000556461 NGDNQ8NEJ9 315 aaKnown RBP11.62□□□□□ -0.55
VTI1B-206ENST00000556461 CABP2Q9NPB3 220 aa11.62□□□□□ -0.55
VTI1B-206ENST00000556461 GPRASP1Q5JY77 1395 aa11.62□□□□□ -0.55
VTI1B-206ENST00000556461 TRPM3Q9HCF6 1732 aaPredicted RBP11.6□□□□□ -0.55
VTI1B-206ENST00000556461 QRICH2Q9H0J4 1663 aa11.6□□□□□ -0.55
VTI1B-206ENST00000556461 FNBP4Q8N3X1 1017 aaPredicted RBP11.6□□□□□ -0.55
VTI1B-206ENST00000556461 QTRT2Q9H974 415 aaKnown RBP11.6□□□□□ -0.55
VTI1B-206ENST00000556461 CCDC61Q9Y6R9 512 aa11.6□□□□□ -0.55
VTI1B-206ENST00000556461 ACEP12821 1306 aa11.6□□□□□ -0.55
VTI1B-206ENST00000556461 PLEKHG3A1L390 1219 aa11.59□□□□□ -0.55
VTI1B-206ENST00000556461 RXRBP28702 533 aa11.59□□□□□ -0.55
VTI1B-206ENST00000556461 SRPK2P78362 688 aaKnown RBP11.59□□□□□ -0.55
VTI1B-206ENST00000556461 USP21Q9UK80 565 aa11.59□□□□□ -0.55
VTI1B-206ENST00000556461 TOPAZ1Q8N9V7 1692 aa11.59□□□□□ -0.55
VTI1B-206ENST00000556461 BCL9LQ86UU0 1499 aa11.58□□□□□ -0.56
VTI1B-206ENST00000556461 RALGAPBQ86X10 1494 aa11.58□□□□□ -0.56
VTI1B-206ENST00000556461 POLR3AO14802 1390 aaPredicted RBP11.58□□□□□ -0.56
VTI1B-206ENST00000556461 ARHGEF10O15013 1369 aa11.58□□□□□ -0.56
VTI1B-206ENST00000556461 CARD11Q9BXL7 1154 aa11.58□□□□□ -0.56
VTI1B-206ENST00000556461 ALS2Q96Q42 1657 aa11.57□□□□□ -0.56
VTI1B-206ENST00000556461 PAK3O75914 559 aaPredicted RBP11.57□□□□□ -0.56
VTI1B-206ENST00000556461 PPIP5K1Q6PFW1 1433 aa11.57□□□□□ -0.56
VTI1B-206ENST00000556461 ATRNO75882 1429 aa11.56□□□□□ -0.56
VTI1B-206ENST00000556461 RBM6P78332 1123 aaKnown RBP11.56□□□□□ -0.56
VTI1B-206ENST00000556461 ITSN1Q15811 1721 aa11.56□□□□□ -0.56
VTI1B-206ENST00000556461 NUTM2GQ5VZR2 741 aa11.56□□□□□ -0.56
VTI1B-206ENST00000556461 CABP1Q9NZU7 370 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms