RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PHF23Q9BUL5 403 aaPredicted RBP23.45■■□□□ 1.34
CCDC88C-209ENST00000554872 STK26Q9P289 416 aa23.44■■□□□ 1.34
CCDC88C-209ENST00000554872 PLEKHH1Q9ULM0 1364 aa23.42■■□□□ 1.34
CCDC88C-209ENST00000554872 WAPLQ7Z5K2 1190 aa23.42■■□□□ 1.34
CCDC88C-209ENST00000554872 DCAF11Q8TEB1 546 aa23.42■■□□□ 1.34
CCDC88C-209ENST00000554872 FMN2Q9NZ56 1722 aa23.41■■□□□ 1.34
CCDC88C-209ENST00000554872 SOCS7O14512 581 aa23.4■■□□□ 1.34
CCDC88C-209ENST00000554872 ADGRB2O60241 1585 aa23.4■■□□□ 1.34
CCDC88C-209ENST00000554872 LRRC59Q96AG4 307 aaKnown RBP23.39■■□□□ 1.33
CCDC88C-209ENST00000554872 KIAA1210Q9ULL0 1709 aa23.39■■□□□ 1.33
CCDC88C-209ENST00000554872 SOS2Q07890 1332 aaPredicted RBP23.38■■□□□ 1.33
CCDC88C-209ENST00000554872 LRP6O75581 1613 aa23.38■■□□□ 1.33
CCDC88C-209ENST00000554872 RGS17Q9UGC6 210 aaPredicted RBP23.38■■□□□ 1.33
CCDC88C-209ENST00000554872 ORAI2Q96SN7 254 aa23.36■■□□□ 1.33
CCDC88C-209ENST00000554872 KIF1AQ12756 1690 aa23.35■■□□□ 1.33
CCDC88C-209ENST00000554872 KDM2AQ9Y2K7 1162 aa23.34■■□□□ 1.33
CCDC88C-209ENST00000554872 PNPLA6Q8IY17 1366 aa23.34■■□□□ 1.33
CCDC88C-209ENST00000554872 PRAM1Q96QH2 718 aa23.33■■□□□ 1.33
CCDC88C-209ENST00000554872 NPHP3Q7Z494 1330 aa23.33■■□□□ 1.32
CCDC88C-209ENST00000554872 PXDNQ92626 1479 aa23.31■■□□□ 1.32
CCDC88C-209ENST00000554872 ANKARQ7Z5J8 1434 aa23.31■■□□□ 1.32
CCDC88C-209ENST00000554872 COL22A1Q8NFW1 1626 aaPredicted RBP23.3■■□□□ 1.32
CCDC88C-209ENST00000554872 DDX17Q92841 729 aaKnown RBP23.3■■□□□ 1.32
CCDC88C-209ENST00000554872 ESCO1Q5FWF5 840 aa23.29■■□□□ 1.32
CCDC88C-209ENST00000554872 ARHGEF28Q8N1W1 1705 aaKnown RBP23.29■■□□□ 1.32
CCDC88C-209ENST00000554872 POGKQ9P215 609 aa23.27■■□□□ 1.32
CCDC88C-209ENST00000554872 EIF3AQ14152 1382 aaKnown RBP23.27■■□□□ 1.31
CCDC88C-209ENST00000554872 TRAK1Q9UPV9 953 aa23.26■■□□□ 1.31
CCDC88C-209ENST00000554872 TRIM26Q12899 539 aaPredicted RBP23.25■■□□□ 1.31
CCDC88C-209ENST00000554872 USP32Q8NFA0 1604 aa23.25■■□□□ 1.31
CCDC88C-209ENST00000554872 POTEAQ6S8J7 498 aa23.23■■□□□ 1.31
CCDC88C-209ENST00000554872 TULP4Q9NRJ4 1543 aa23.23■■□□□ 1.31
CCDC88C-209ENST00000554872 FOXO3O43524 673 aa23.21■■□□□ 1.31
CCDC88C-209ENST00000554872 MEX3CQ5U5Q3 659 aaKnown RBP23.21■■□□□ 1.31
CCDC88C-209ENST00000554872 ZNF772Q68DY9 489 aaPredicted RBP23.21■■□□□ 1.31
CCDC88C-209ENST00000554872 RGPD8O14715 1765 aaPredicted RBP23.2■■□□□ 1.3
CCDC88C-209ENST00000554872 SAFB2Q14151 953 aaKnown RBP eCLIP23.2■■□□□ 1.3
CCDC88C-209ENST00000554872 NUTM2FA1L443 756 aa23.19■■□□□ 1.3
CCDC88C-209ENST00000554872 L3MBTL2Q969R5 705 aa23.19■■□□□ 1.3
CCDC88C-209ENST00000554872 PHF8Q9UPP1 1060 aa23.19■■□□□ 1.3
CCDC88C-209ENST00000554872 NUTM2BA6NNL0 878 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-209ENST00000554872 NUTM2EB1AL46 878 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-209ENST00000554872 WASLO00401 505 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-209ENST00000554872 NUTM2AQ8IVF1 878 aaPredicted RBP23.17■■□□□ 1.3
CCDC88C-209ENST00000554872 SPATA31A3Q5VYP0 1347 aa23.16■■□□□ 1.3
CCDC88C-209ENST00000554872 SBNO1A3KN83 1393 aa23.15■■□□□ 1.3
CCDC88C-209ENST00000554872 TRPM1Q7Z4N2 1603 aa23.15■■□□□ 1.3
CCDC88C-209ENST00000554872 MINK1Q8N4C8 1332 aaPredicted RBP23.15■■□□□ 1.3
CCDC88C-209ENST00000554872 SIN3AQ96ST3 1273 aa23.15■■□□□ 1.3
CCDC88C-209ENST00000554872 ATP7BP35670 1465 aa23.14■■□□□ 1.29
CCDC88C-209ENST00000554872 NBPF1Q3BBV0 1214 aa23.14■■□□□ 1.29
CCDC88C-209ENST00000554872 TNS3Q68CZ2 1445 aa23.14■■□□□ 1.29
CCDC88C-209ENST00000554872 PRR36Q9H6K5 1346 aa23.13■■□□□ 1.29
CCDC88C-209ENST00000554872 ITSN1Q15811 1721 aa23.13■■□□□ 1.29
CCDC88C-209ENST00000554872 AFF2P51816 1311 aa23.12■■□□□ 1.29
CCDC88C-209ENST00000554872 CDK12Q9NYV4 1490 aaPredicted RBP23.12■■□□□ 1.29
CCDC88C-209ENST00000554872 KRT28Q7Z3Y7 464 aa23.12■■□□□ 1.29
CCDC88C-209ENST00000554872 HIRIP3Q9BW71 556 aaPredicted RBP23.12■■□□□ 1.29
CCDC88C-209ENST00000554872 XPCQ01831 940 aaPredicted RBP23.11■■□□□ 1.29
CCDC88C-209ENST00000554872 PSME1Q06323 249 aa23.11■■□□□ 1.29
CCDC88C-209ENST00000554872 MARF1Q9Y4F3 1742 aaKnown RBP23.11■■□□□ 1.29
CCDC88C-209ENST00000554872 TRPM3Q9HCF6 1732 aaPredicted RBP23.1■■□□□ 1.29
CCDC88C-209ENST00000554872 ARHGEF10O15013 1369 aa23.09■■□□□ 1.29
CCDC88C-209ENST00000554872 TOPAZ1Q8N9V7 1692 aa23.09■■□□□ 1.29
CCDC88C-209ENST00000554872 FNBP4Q8N3X1 1017 aaPredicted RBP23.08■■□□□ 1.29
CCDC88C-209ENST00000554872 C8orf37Q96NL8 207 aa23.08■■□□□ 1.29
CCDC88C-209ENST00000554872 GPRASP1Q5JY77 1395 aa23.08■■□□□ 1.29
CCDC88C-209ENST00000554872 CENPJQ9HC77 1338 aaPredicted RBP23.07■■□□□ 1.28
CCDC88C-209ENST00000554872 NEUROD1Q13562 356 aa23.06■■□□□ 1.28
CCDC88C-209ENST00000554872 ADAMTS2O95450 1211 aa23.05■■□□□ 1.28
CCDC88C-209ENST00000554872 ALS2Q96Q42 1657 aa23.05■■□□□ 1.28
CCDC88C-209ENST00000554872 QRICH2Q9H0J4 1663 aa23.05■■□□□ 1.28
CCDC88C-209ENST00000554872 NGLY1Q96IV0 654 aa23.04■■□□□ 1.28
CCDC88C-209ENST00000554872 ABCA3Q99758 1704 aa23.04■■□□□ 1.28
CCDC88C-209ENST00000554872 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
CCDC88C-209ENST00000554872 NUDT16Q96DE0 195 aaKnown RBP23.03■■□□□ 1.28
CCDC88C-209ENST00000554872 POLR3AO14802 1390 aaPredicted RBP23.02■■□□□ 1.28
CCDC88C-209ENST00000554872 ROCK2O75116 1388 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-209ENST00000554872 RXRBP28702 533 aa23.02■■□□□ 1.28
CCDC88C-209ENST00000554872 CDK19Q9BWU1 502 aa23.02■■□□□ 1.28
CCDC88C-209ENST00000554872 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-209ENST00000554872 CCDC61Q9Y6R9 512 aa23.01■■□□□ 1.27
CCDC88C-209ENST00000554872 ATRNO75882 1429 aa23■■□□□ 1.27
CCDC88C-209ENST00000554872 TONSLQ96HA7 1378 aa23■■□□□ 1.27
CCDC88C-209ENST00000554872 BCL9LQ86UU0 1499 aa22.99■■□□□ 1.27
CCDC88C-209ENST00000554872 RALGAPBQ86X10 1494 aa22.99■■□□□ 1.27
CCDC88C-209ENST00000554872 SLIT2O94813 1529 aa22.99■■□□□ 1.27
CCDC88C-209ENST00000554872 PLEKHG3A1L390 1219 aa22.99■■□□□ 1.27
CCDC88C-209ENST00000554872 RBM6P78332 1123 aaKnown RBP22.99■■□□□ 1.27
CCDC88C-209ENST00000554872 QTRT2Q9H974 415 aaKnown RBP22.98■■□□□ 1.27
CCDC88C-209ENST00000554872 USP21Q9UK80 565 aa22.98■■□□□ 1.27
CCDC88C-209ENST00000554872 NBPF8Q3BBV2 869 aa22.97■■□□□ 1.27
CCDC88C-209ENST00000554872 NGDNQ8NEJ9 315 aaKnown RBP22.97■■□□□ 1.27
CCDC88C-209ENST00000554872 TRPC5Q9UL62 973 aaPredicted RBP22.97■■□□□ 1.27
CCDC88C-209ENST00000554872 SBNO2Q9Y2G9 1366 aa22.97■■□□□ 1.27
CCDC88C-209ENST00000554872 CRYBG1Q9Y4K1 1723 aa22.96■■□□□ 1.27
CCDC88C-209ENST00000554872 NWD2Q9ULI1 1742 aa22.94■■□□□ 1.26
CCDC88C-209ENST00000554872 RGS12O14924 1447 aa22.94■■□□□ 1.26
CCDC88C-209ENST00000554872 BRD4O60885 1362 aaPredicted RBP22.94■■□□□ 1.26
CCDC88C-209ENST00000554872 PPIP5K1Q6PFW1 1433 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms