RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 TULP4Q9NRJ4 1543 aa20.22■□□□□ 0.83
SHMT2-210ENST00000553950 ITSN1Q15811 1721 aa20.22■□□□□ 0.83
SHMT2-210ENST00000553950 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-210ENST00000553950 EVC2Q86UK5 1308 aa20.21■□□□□ 0.83
SHMT2-210ENST00000553950 ADGRL3Q9HAR2 1447 aa20.19■□□□□ 0.82
SHMT2-210ENST00000553950 MYOM1P52179 1685 aa20.19■□□□□ 0.82
SHMT2-210ENST00000553950 CCDC7Q96M83 1385 aa20.19■□□□□ 0.82
SHMT2-210ENST00000553950 PLEKHH1Q9ULM0 1364 aa20.19■□□□□ 0.82
SHMT2-210ENST00000553950 FMN2Q9NZ56 1722 aa20.19■□□□□ 0.82
SHMT2-210ENST00000553950 PUS7Q96PZ0 661 aaKnown RBP20.18■□□□□ 0.82
SHMT2-210ENST00000553950 DISP3Q9P2K9 1392 aa20.18■□□□□ 0.82
SHMT2-210ENST00000553950 HIRIP3Q9BW71 556 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-210ENST00000553950 NINLQ9Y2I6 1382 aa20.17■□□□□ 0.82
SHMT2-210ENST00000553950 DCCP43146 1447 aa20.17■□□□□ 0.82
SHMT2-210ENST00000553950 ATAD2Q6PL18 1390 aa20.16■□□□□ 0.82
SHMT2-210ENST00000553950 XIRP1Q702N8 1843 aaKnown RBP20.16■□□□□ 0.82
SHMT2-210ENST00000553950 SAFB2Q14151 953 aaKnown RBP eCLIP20.15■□□□□ 0.82
SHMT2-210ENST00000553950 WAPLQ7Z5K2 1190 aa20.15■□□□□ 0.82
SHMT2-210ENST00000553950 MINK1Q8N4C8 1332 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-210ENST00000553950 TOPAZ1Q8N9V7 1692 aa20.15■□□□□ 0.82
SHMT2-210ENST00000553950 KIF7Q2M1P5 1343 aa20.14■□□□□ 0.81
SHMT2-210ENST00000553950 ANKARQ7Z5J8 1434 aa20.12■□□□□ 0.81
SHMT2-210ENST00000553950 WASHC2AQ641Q2 1341 aa20.12■□□□□ 0.81
SHMT2-210ENST00000553950 PROSER2Q86WR7 435 aaPredicted RBP20.12■□□□□ 0.81
SHMT2-210ENST00000553950 LRRC7Q96NW7 1537 aa20.12■□□□□ 0.81
SHMT2-210ENST00000553950 ZNF335Q9H4Z2 1342 aaPredicted RBP20.1■□□□□ 0.81
SHMT2-210ENST00000553950 TMEM94Q12767 1356 aa20.09■□□□□ 0.81
SHMT2-210ENST00000553950 WASLO00401 505 aaPredicted RBP20.09■□□□□ 0.81
SHMT2-210ENST00000553950 SRPK2P78362 688 aaKnown RBP20.09■□□□□ 0.81
SHMT2-210ENST00000553950 ATP7BP35670 1465 aa20.09■□□□□ 0.81
SHMT2-210ENST00000553950 LTBP4Q8N2S1 1624 aa20.09■□□□□ 0.81
SHMT2-210ENST00000553950 MSH6P52701 1360 aa20.08■□□□□ 0.81
SHMT2-210ENST00000553950 C14orf37Q86TY3 774 aa20.08■□□□□ 0.81
SHMT2-210ENST00000553950 USP32Q8NFA0 1604 aa20.07■□□□□ 0.8
SHMT2-210ENST00000553950 KIF1AQ12756 1690 aa20.07■□□□□ 0.8
SHMT2-210ENST00000553950 C11orf95C9JLR9 678 aaPredicted RBP20.05■□□□□ 0.8
SHMT2-210ENST00000553950 POLR3GLQ9BT43 218 aa20.05■□□□□ 0.8
SHMT2-210ENST00000553950 CDK19Q9BWU1 502 aa20.05■□□□□ 0.8
SHMT2-210ENST00000553950 RGPD8O14715 1765 aaPredicted RBP20.05■□□□□ 0.8
SHMT2-210ENST00000553950 AKAP12Q02952 1782 aa20.05■□□□□ 0.8
SHMT2-210ENST00000553950 C19orf44Q9H6X5 657 aa20.04■□□□□ 0.8
SHMT2-210ENST00000553950 IQSEC2Q5JU85 1478 aa20.03■□□□□ 0.8
SHMT2-210ENST00000553950 MON2Q7Z3U7 1717 aa20.02■□□□□ 0.8
SHMT2-210ENST00000553950 CABP2Q9NPB3 220 aa20.01■□□□□ 0.79
SHMT2-210ENST00000553950 PPIP5K1Q6PFW1 1433 aa20.01■□□□□ 0.79
SHMT2-210ENST00000553950 ANKRD36BQ8N2N9 1353 aa20■□□□□ 0.79
SHMT2-210ENST00000553950 CADPS2Q86UW7 1296 aa20■□□□□ 0.79
SHMT2-210ENST00000553950 ATF3P18847 181 aa19.99■□□□□ 0.79
SHMT2-210ENST00000553950 NUDT16Q96DE0 195 aaKnown RBP19.98■□□□□ 0.79
SHMT2-210ENST00000553950 CCDC61Q9Y6R9 512 aa19.98■□□□□ 0.79
SHMT2-210ENST00000553950 MST1RQ04912 1400 aa19.96■□□□□ 0.79
SHMT2-210ENST00000553950 TMC1Q8TDI8 760 aa19.96■□□□□ 0.79
SHMT2-210ENST00000553950 TERF2IPQ9NYB0 399 aa19.96■□□□□ 0.79
SHMT2-210ENST00000553950 KIF20BQ96Q89 1820 aa19.96■□□□□ 0.79
SHMT2-210ENST00000553950 NRKQ7Z2Y5 1582 aa19.95■□□□□ 0.78
SHMT2-210ENST00000553950 DDX10Q13206 875 aaKnown RBP19.95■□□□□ 0.78
SHMT2-210ENST00000553950 C1orf167Q5SNV9 1468 aa19.94■□□□□ 0.78
SHMT2-210ENST00000553950 HDGFL2Q7Z4V5 671 aaPredicted RBP19.94■□□□□ 0.78
SHMT2-210ENST00000553950 PRR36Q9H6K5 1346 aa19.94■□□□□ 0.78
SHMT2-210ENST00000553950 ANKRD26Q9UPS8 1709 aa19.93■□□□□ 0.78
SHMT2-210ENST00000553950 RBM33Q96EV2 1170 aaKnown RBP19.93■□□□□ 0.78
SHMT2-210ENST00000553950 A0A1W2PP64 1363 aa19.92■□□□□ 0.78
SHMT2-210ENST00000553950 BRD4O60885 1362 aaPredicted RBP19.92■□□□□ 0.78
SHMT2-210ENST00000553950 CPSF1Q10570 1443 aaKnown RBP19.92■□□□□ 0.78
SHMT2-210ENST00000553950 CD163L1Q9NR16 1453 aa19.92■□□□□ 0.78
SHMT2-210ENST00000553950 POLR3AO14802 1390 aaPredicted RBP19.91■□□□□ 0.78
SHMT2-210ENST00000553950 PLEKHG3A1L390 1219 aa19.9■□□□□ 0.78
SHMT2-210ENST00000553950 DIEXFQ68CQ4 756 aaKnown RBP19.9■□□□□ 0.78
SHMT2-210ENST00000553950 EDC4Q6P2E9 1401 aaKnown RBP19.9■□□□□ 0.78
SHMT2-210ENST00000553950 ZNF692Q9BU19 519 aaPredicted RBP19.89■□□□□ 0.77
SHMT2-210ENST00000553950 NSD3Q9BZ95 1437 aa19.89■□□□□ 0.77
SHMT2-210ENST00000553950 NSD2O96028 1365 aa19.88■□□□□ 0.77
SHMT2-210ENST00000553950 NPC1L1Q9UHC9 1359 aa19.88■□□□□ 0.77
SHMT2-210ENST00000553950 SLC12A5Q9H2X9 1139 aa19.88■□□□□ 0.77
SHMT2-210ENST00000553950 PANK3Q9H999 370 aa19.88■□□□□ 0.77
SHMT2-210ENST00000553950 CABP1Q9NZU7 370 aa19.88■□□□□ 0.77
SHMT2-210ENST00000553950 USP6P35125 1406 aa19.87■□□□□ 0.77
SHMT2-210ENST00000553950 KTN1Q86UP2 1357 aaKnown RBP19.87■□□□□ 0.77
SHMT2-210ENST00000553950 KNSTRNQ9Y448 316 aa19.87■□□□□ 0.77
SHMT2-210ENST00000553950 NUTM2FA1L443 756 aa19.86■□□□□ 0.77
SHMT2-210ENST00000553950 PHF8Q9UPP1 1060 aa19.86■□□□□ 0.77
SHMT2-210ENST00000553950 NHSL1Q5SYE7 1610 aa19.86■□□□□ 0.77
SHMT2-210ENST00000553950 USP54Q70EL1 1684 aa19.85■□□□□ 0.77
SHMT2-210ENST00000553950 NGDNQ8NEJ9 315 aaKnown RBP19.85■□□□□ 0.77
SHMT2-210ENST00000553950 ACEP12821 1306 aa19.84■□□□□ 0.77
SHMT2-210ENST00000553950 CGNL1Q0VF96 1302 aa19.84■□□□□ 0.77
SHMT2-210ENST00000553950 ESCO1Q5FWF5 840 aa19.84■□□□□ 0.77
SHMT2-210ENST00000553950 TRPM3Q9HCF6 1732 aaPredicted RBP19.83■□□□□ 0.77
SHMT2-210ENST00000553950 ROBO1Q9Y6N7 1651 aa19.83■□□□□ 0.76
SHMT2-210ENST00000553950 TTC21AQ8NDW8 1320 aa19.81■□□□□ 0.76
SHMT2-210ENST00000553950 ANP32CO43423 234 aa19.81■□□□□ 0.76
SHMT2-210ENST00000553950 NPHP3Q7Z494 1330 aa19.8■□□□□ 0.76
SHMT2-210ENST00000553950 PER1O15534 1290 aaPredicted RBP19.8■□□□□ 0.76
SHMT2-210ENST00000553950 SLAIN2Q9P270 581 aa19.8■□□□□ 0.76
SHMT2-210ENST00000553950 AHDC1Q5TGY3 1603 aaPredicted RBP19.8■□□□□ 0.76
SHMT2-210ENST00000553950 PIK3C2AO00443 1686 aa19.79■□□□□ 0.76
SHMT2-210ENST00000553950 PMFBP1Q8TBY8 1022 aa19.79■□□□□ 0.76
SHMT2-210ENST00000553950 SSH2Q76I76 1423 aa19.78■□□□□ 0.76
SHMT2-210ENST00000553950 TOM1O60784 492 aa19.78■□□□□ 0.76
SHMT2-210ENST00000553950 ALS2Q96Q42 1657 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms