RNA–Protein interactions for RNA: ENST00000553659.1

ACTN1-209, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 434 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-209ENST00000553659 FOXD1Q16676 465 aa23.53■■□□□ 1.36
ACTN1-209ENST00000553659 ADGRF5Q8IZF2 1346 aa23.5■■□□□ 1.35
ACTN1-209ENST00000553659 CCDC144AA2RUR9 1427 aa23.49■■□□□ 1.35
ACTN1-209ENST00000553659 RGS12O14924 1447 aa23.49■■□□□ 1.35
ACTN1-209ENST00000553659 CDC42BPGQ6DT37 1551 aa23.48■■□□□ 1.35
ACTN1-209ENST00000553659 IFT172Q9UG01 1749 aa23.48■■□□□ 1.35
ACTN1-209ENST00000553659 COL22A1Q8NFW1 1626 aaPredicted RBP23.48■■□□□ 1.35
ACTN1-209ENST00000553659 RGL3Q3MIN7 710 aa23.47■■□□□ 1.35
ACTN1-209ENST00000553659 ESCO1Q5FWF5 840 aa23.47■■□□□ 1.35
ACTN1-209ENST00000553659 CCER1Q8TC90 406 aaPredicted RBP23.47■■□□□ 1.35
ACTN1-209ENST00000553659 SPATA31E1Q6ZUB1 1445 aa23.46■■□□□ 1.35
ACTN1-209ENST00000553659 NPHP3Q7Z494 1330 aa23.46■■□□□ 1.35
ACTN1-209ENST00000553659 MPHOSPH9Q99550 1183 aa23.46■■□□□ 1.35
ACTN1-209ENST00000553659 ANKRD30BQ9BXX2 1392 aa23.45■■□□□ 1.34
ACTN1-209ENST00000553659 USP21Q9UK80 565 aa23.45■■□□□ 1.34
ACTN1-209ENST00000553659 FNBP4Q8N3X1 1017 aaPredicted RBP23.44■■□□□ 1.34
ACTN1-209ENST00000553659 STK26Q9P289 416 aa23.44■■□□□ 1.34
ACTN1-209ENST00000553659 TECPR2O15040 1411 aa23.43■■□□□ 1.34
ACTN1-209ENST00000553659 WAPLQ7Z5K2 1190 aa23.43■■□□□ 1.34
ACTN1-209ENST00000553659 TRPC5Q9UL62 973 aaPredicted RBP23.43■■□□□ 1.34
ACTN1-209ENST00000553659 KNDC1Q76NI1 1749 aa23.42■■□□□ 1.34
ACTN1-209ENST00000553659 MARF1Q9Y4F3 1742 aaKnown RBP23.42■■□□□ 1.34
ACTN1-209ENST00000553659 LRPPRCP42704 1394 aaKnown RBP23.42■■□□□ 1.34
ACTN1-209ENST00000553659 PXDNQ92626 1479 aa23.42■■□□□ 1.34
ACTN1-209ENST00000553659 ABCC11Q96J66 1382 aa23.41■■□□□ 1.34
ACTN1-209ENST00000553659 FOXO3O43524 673 aa23.41■■□□□ 1.34
ACTN1-209ENST00000553659 TMEM132EQ6IEE7 984 aa23.4■■□□□ 1.34
ACTN1-209ENST00000553659 MYOM2P54296 1465 aa23.39■■□□□ 1.34
ACTN1-209ENST00000553659 PIK3C2GO75747 1445 aa23.38■■□□□ 1.33
ACTN1-209ENST00000553659 ATRNO75882 1429 aa23.37■■□□□ 1.33
ACTN1-209ENST00000553659 NUTM2FA1L443 756 aa23.37■■□□□ 1.33
ACTN1-209ENST00000553659 XPCQ01831 940 aaPredicted RBP23.37■■□□□ 1.33
ACTN1-209ENST00000553659 FMN2Q9NZ56 1722 aa23.36■■□□□ 1.33
ACTN1-209ENST00000553659 PLEKHH1Q9ULM0 1364 aa23.36■■□□□ 1.33
ACTN1-209ENST00000553659 ATAD2Q6PL18 1390 aa23.35■■□□□ 1.33
ACTN1-209ENST00000553659 ACIN1Q9UKV3 1341 aaKnown RBP23.34■■□□□ 1.33
ACTN1-209ENST00000553659 YTHDC2Q9H6S0 1430 aaKnown RBP23.34■■□□□ 1.33
ACTN1-209ENST00000553659 SIRT1Q96EB6 747 aa23.34■■□□□ 1.33
ACTN1-209ENST00000553659 RGPD8O14715 1765 aaPredicted RBP23.33■■□□□ 1.33
ACTN1-209ENST00000553659 BCL9LQ86UU0 1499 aa23.33■■□□□ 1.33
ACTN1-209ENST00000553659 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
ACTN1-209ENST00000553659 C14orf93Q9H972 538 aaKnown RBP23.32■■□□□ 1.32
ACTN1-209ENST00000553659 SPATA31A3Q5VYP0 1347 aa23.29■■□□□ 1.32
ACTN1-209ENST00000553659 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.28■■□□□ 1.32
ACTN1-209ENST00000553659 GJD4Q96KN9 370 aaPredicted RBP23.28■■□□□ 1.32
ACTN1-209ENST00000553659 KRT28Q7Z3Y7 464 aa23.27■■□□□ 1.32
ACTN1-209ENST00000553659 NRXN1Q9ULB1 1477 aa23.27■■□□□ 1.32
ACTN1-209ENST00000553659 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.31
ACTN1-209ENST00000553659 CFAP70Q5T0N1 1121 aa23.26■■□□□ 1.31
ACTN1-209ENST00000553659 CLSPNQ9HAW4 1339 aa23.26■■□□□ 1.31
ACTN1-209ENST00000553659 UNC5CLQ8IV45 518 aa23.24■■□□□ 1.31
ACTN1-209ENST00000553659 PHF8Q9UPP1 1060 aa23.24■■□□□ 1.31
ACTN1-209ENST00000553659 CCDC125Q86Z20 511 aa23.23■■□□□ 1.31
ACTN1-209ENST00000553659 SLIT2O94813 1529 aa23.23■■□□□ 1.31
ACTN1-209ENST00000553659 PSME1Q06323 249 aa23.22■■□□□ 1.31
ACTN1-209ENST00000553659 USP32Q8NFA0 1604 aa23.22■■□□□ 1.31
ACTN1-209ENST00000553659 PRAM1Q96QH2 718 aa23.2■■□□□ 1.3
ACTN1-209ENST00000553659 TNS3Q68CZ2 1445 aa23.19■■□□□ 1.3
ACTN1-209ENST00000553659 GLI3P10071 1580 aa23.18■■□□□ 1.3
ACTN1-209ENST00000553659 SAFB2Q14151 953 aaKnown RBP eCLIP23.18■■□□□ 1.3
ACTN1-209ENST00000553659 DLC1Q96QB1 1528 aa23.18■■□□□ 1.3
ACTN1-209ENST00000553659 RALGAPBQ86X10 1494 aa23.17■■□□□ 1.3
ACTN1-209ENST00000553659 SBNO1A3KN83 1393 aa23.17■■□□□ 1.3
ACTN1-209ENST00000553659 HAP1P54257 671 aaPredicted RBP23.17■■□□□ 1.3
ACTN1-209ENST00000553659 BRWD3Q6RI45 1802 aa23.17■■□□□ 1.3
ACTN1-209ENST00000553659 POGKQ9P215 609 aa23.16■■□□□ 1.3
ACTN1-209ENST00000553659 CABLES1Q8TDN4 633 aa23.15■■□□□ 1.3
ACTN1-209ENST00000553659 ZRANB1Q9UGI0 708 aa23.15■■□□□ 1.3
ACTN1-209ENST00000553659 NWD2Q9ULI1 1742 aa23.15■■□□□ 1.3
ACTN1-209ENST00000553659 RAB3GAP2Q9H2M9 1393 aa23.14■■□□□ 1.3
ACTN1-209ENST00000553659 ANKARQ7Z5J8 1434 aa23.14■■□□□ 1.29
ACTN1-209ENST00000553659 ABCA3Q99758 1704 aa23.13■■□□□ 1.29
ACTN1-209ENST00000553659 PLCH1Q4KWH8 1693 aa23.13■■□□□ 1.29
ACTN1-209ENST00000553659 ARHGEF10O15013 1369 aa23.13■■□□□ 1.29
ACTN1-209ENST00000553659 ADGRB2O60241 1585 aa23.12■■□□□ 1.29
ACTN1-209ENST00000553659 VPS72Q15906 364 aa23.12■■□□□ 1.29
ACTN1-209ENST00000553659 LMOD2Q6P5Q4 547 aa23.12■■□□□ 1.29
ACTN1-209ENST00000553659 ADGRB1O14514 1584 aa23.11■■□□□ 1.29
ACTN1-209ENST00000553659 PMFBP1Q8TBY8 1022 aa23.11■■□□□ 1.29
ACTN1-209ENST00000553659 EP400Q96L91 3159 aa23.11■■□□□ 1.29
ACTN1-209ENST00000553659 PLEKHG5O94827 1062 aa23.1■■□□□ 1.29
ACTN1-209ENST00000553659 TRAK1Q9UPV9 953 aa23.09■■□□□ 1.29
ACTN1-209ENST00000553659 TRPM3Q9HCF6 1732 aaPredicted RBP23.08■■□□□ 1.29
ACTN1-209ENST00000553659 ONECUT3O60422 494 aaPredicted RBP23.08■■□□□ 1.29
ACTN1-209ENST00000553659 SEPT12Q8IYM1 358 aa23.08■■□□□ 1.29
ACTN1-209ENST00000553659 BLMP54132 1417 aaPredicted RBP23.08■■□□□ 1.28
ACTN1-209ENST00000553659 FAM83GA6ND36 823 aa23.07■■□□□ 1.28
ACTN1-209ENST00000553659 KDM2AQ9Y2K7 1162 aa23.07■■□□□ 1.28
ACTN1-209ENST00000553659 DCAF11Q8TEB1 546 aa23.06■■□□□ 1.28
ACTN1-209ENST00000553659 STAC3Q96MF2 364 aa23.06■■□□□ 1.28
ACTN1-209ENST00000553659 HIRIP3Q9BW71 556 aaPredicted RBP23.06■■□□□ 1.28
ACTN1-209ENST00000553659 CCDC9Q9Y3X0 531 aaKnown RBP23.06■■□□□ 1.28
ACTN1-209ENST00000553659 EIF3AQ14152 1382 aaKnown RBP23.05■■□□□ 1.28
ACTN1-209ENST00000553659 MINK1Q8N4C8 1332 aaPredicted RBP23.05■■□□□ 1.28
ACTN1-209ENST00000553659 ALS2Q96Q42 1657 aa23.04■■□□□ 1.28
ACTN1-209ENST00000553659 GPRASP1Q5JY77 1395 aa23.03■■□□□ 1.28
ACTN1-209ENST00000553659 PRR36Q9H6K5 1346 aa23.03■■□□□ 1.28
ACTN1-209ENST00000553659 TULP4Q9NRJ4 1543 aa23.03■■□□□ 1.28
ACTN1-209ENST00000553659 WASLO00401 505 aaPredicted RBP23.02■■□□□ 1.28
ACTN1-209ENST00000553659 NRAPQ86VF7 1730 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms