RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 MST1RQ04912 1400 aa32.77■■■□□ 2.84
TDP1-206ENST00000553569 SAFB2Q14151 953 aaKnown RBP eCLIP32.76■■■□□ 2.83
TDP1-206ENST00000553569 NBPF1Q3BBV0 1214 aa32.76■■■□□ 2.83
TDP1-206ENST00000553569 SIRT1Q96EB6 747 aa32.76■■■□□ 2.83
TDP1-206ENST00000553569 ARHGEF28Q8N1W1 1705 aaKnown RBP32.76■■■□□ 2.83
TDP1-206ENST00000553569 CDC42BPGQ6DT37 1551 aa32.75■■■□□ 2.83
TDP1-206ENST00000553569 POGKQ9P215 609 aa32.74■■■□□ 2.83
TDP1-206ENST00000553569 CCER1Q8TC90 406 aaPredicted RBP32.73■■■□□ 2.83
TDP1-206ENST00000553569 CLSPNQ9HAW4 1339 aa32.72■■■□□ 2.83
TDP1-206ENST00000553569 NBPF8Q3BBV2 869 aa32.69■■■□□ 2.82
TDP1-206ENST00000553569 C1orf167Q5SNV9 1468 aa32.67■■■□□ 2.82
TDP1-206ENST00000553569 ROCK2O75116 1388 aaKnown RBP32.66■■■□□ 2.82
TDP1-206ENST00000553569 BRINP3Q76B58 766 aa32.65■■■□□ 2.82
TDP1-206ENST00000553569 PHLPP1O60346 1717 aa32.65■■■□□ 2.82
TDP1-206ENST00000553569 FMN2Q9NZ56 1722 aa32.65■■■□□ 2.82
TDP1-206ENST00000553569 MINK1Q8N4C8 1332 aaPredicted RBP32.62■■■□□ 2.81
TDP1-206ENST00000553569 ADGRB2O60241 1585 aa32.62■■■□□ 2.81
TDP1-206ENST00000553569 NUTM2FA1L443 756 aa32.61■■■□□ 2.81
TDP1-206ENST00000553569 HIRIP3Q9BW71 556 aaPredicted RBP32.6■■■□□ 2.81
TDP1-206ENST00000553569 AHDC1Q5TGY3 1603 aaPredicted RBP32.59■■■□□ 2.81
TDP1-206ENST00000553569 RALGAPBQ86X10 1494 aa32.58■■■□□ 2.81
TDP1-206ENST00000553569 NHSL1Q5SYE7 1610 aa32.56■■■□□ 2.8
TDP1-206ENST00000553569 ORAI2Q96SN7 254 aa32.56■■■□□ 2.8
TDP1-206ENST00000553569 COL16A1Q07092 1604 aaPredicted RBP32.55■■■□□ 2.8
TDP1-206ENST00000553569 QRICH2Q9H0J4 1663 aa32.53■■■□□ 2.8
TDP1-206ENST00000553569 RGPD8O14715 1765 aaPredicted RBP32.53■■■□□ 2.8
TDP1-206ENST00000553569 ESCO1Q5FWF5 840 aa32.52■■■□□ 2.8
TDP1-206ENST00000553569 GPRASP1Q5JY77 1395 aa32.52■■■□□ 2.8
TDP1-206ENST00000553569 CENPJQ9HC77 1338 aaPredicted RBP32.51■■■□□ 2.79
TDP1-206ENST00000553569 DDX17Q92841 729 aaKnown RBP32.5■■■□□ 2.79
TDP1-206ENST00000553569 USP32Q8NFA0 1604 aa32.48■■■□□ 2.79
TDP1-206ENST00000553569 CARD11Q9BXL7 1154 aa32.48■■■□□ 2.79
TDP1-206ENST00000553569 TIMELESSQ9UNS1 1208 aa32.47■■■□□ 2.79
TDP1-206ENST00000553569 EIF3AQ14152 1382 aaKnown RBP32.46■■■□□ 2.79
TDP1-206ENST00000553569 WASLO00401 505 aaPredicted RBP32.46■■■□□ 2.79
TDP1-206ENST00000553569 TULP4Q9NRJ4 1543 aa32.46■■■□□ 2.79
TDP1-206ENST00000553569 KIF1AQ12756 1690 aa32.45■■■□□ 2.79
TDP1-206ENST00000553569 ANKARQ7Z5J8 1434 aa32.44■■■□□ 2.78
TDP1-206ENST00000553569 PRR36Q9H6K5 1346 aa32.39■■■□□ 2.78
TDP1-206ENST00000553569 JCADQ9P266 1359 aa32.39■■■□□ 2.78
TDP1-206ENST00000553569 CDK19Q9BWU1 502 aa32.38■■■□□ 2.77
TDP1-206ENST00000553569 MED1Q15648 1581 aaPredicted RBP32.37■■■□□ 2.77
TDP1-206ENST00000553569 NPHP3Q7Z494 1330 aa32.37■■■□□ 2.77
TDP1-206ENST00000553569 FOXO3O43524 673 aa32.37■■■□□ 2.77
TDP1-206ENST00000553569 PHF8Q9UPP1 1060 aa32.37■■■□□ 2.77
TDP1-206ENST00000553569 ATP7BP35670 1465 aa32.36■■■□□ 2.77
TDP1-206ENST00000553569 ITSN1Q15811 1721 aa32.36■■■□□ 2.77
TDP1-206ENST00000553569 SHPRHQ149N8 1683 aa32.36■■■□□ 2.77
TDP1-206ENST00000553569 XPCQ01831 940 aaPredicted RBP32.35■■■□□ 2.77
TDP1-206ENST00000553569 PXDNQ92626 1479 aa32.34■■■□□ 2.77
TDP1-206ENST00000553569 SOS2Q07890 1332 aaPredicted RBP32.33■■■□□ 2.77
TDP1-206ENST00000553569 PMFBP1Q8TBY8 1022 aa32.33■■■□□ 2.77
TDP1-206ENST00000553569 SRPK2P78362 688 aaKnown RBP32.31■■■□□ 2.76
TDP1-206ENST00000553569 LRRC59Q96AG4 307 aaKnown RBP32.31■■■□□ 2.76
TDP1-206ENST00000553569 NUDT16Q96DE0 195 aaKnown RBP32.31■■■□□ 2.76
TDP1-206ENST00000553569 TOPAZ1Q8N9V7 1692 aa32.31■■■□□ 2.76
TDP1-206ENST00000553569 CABP2Q9NPB3 220 aa32.28■■■□□ 2.76
TDP1-206ENST00000553569 EVC2Q86UK5 1308 aa32.27■■■□□ 2.76
TDP1-206ENST00000553569 PNPLA6Q8IY17 1366 aa32.26■■■□□ 2.75
TDP1-206ENST00000553569 DISP3Q9P2K9 1392 aa32.25■■■□□ 2.75
TDP1-206ENST00000553569 KRT28Q7Z3Y7 464 aa32.24■■■□□ 2.75
TDP1-206ENST00000553569 USP47Q96K76 1375 aa32.23■■■□□ 2.75
TDP1-206ENST00000553569 SBNO2Q9Y2G9 1366 aa32.23■■■□□ 2.75
TDP1-206ENST00000553569 PSME1Q06323 249 aa32.22■■■□□ 2.75
TDP1-206ENST00000553569 NGDNQ8NEJ9 315 aaKnown RBP32.22■■■□□ 2.75
TDP1-206ENST00000553569 SPATA31A6Q5VVP1 1343 aa32.22■■■□□ 2.75
TDP1-206ENST00000553569 CCDC61Q9Y6R9 512 aa32.21■■■□□ 2.75
TDP1-206ENST00000553569 LRP6O75581 1613 aa32.2■■■□□ 2.75
TDP1-206ENST00000553569 PPIP5K1Q6PFW1 1433 aa32.19■■■□□ 2.74
TDP1-206ENST00000553569 ST20-MTHFSA0A0A6YYL1 179 aa32.19■■■□□ 2.74
TDP1-206ENST00000553569 NUTM2BA6NNL0 878 aaPredicted RBP32.19■■■□□ 2.74
TDP1-206ENST00000553569 NUTM2EB1AL46 878 aaPredicted RBP32.19■■■□□ 2.74
TDP1-206ENST00000553569 NUTM2AQ8IVF1 878 aaPredicted RBP32.19■■■□□ 2.74
TDP1-206ENST00000553569 TRPM3Q9HCF6 1732 aaPredicted RBP32.17■■■□□ 2.74
TDP1-206ENST00000553569 COL22A1Q8NFW1 1626 aaPredicted RBP32.16■■■□□ 2.74
TDP1-206ENST00000553569 TNS3Q68CZ2 1445 aa32.16■■■□□ 2.74
TDP1-206ENST00000553569 PHF23Q9BUL5 403 aaPredicted RBP32.15■■■□□ 2.74
TDP1-206ENST00000553569 SPATA31A3Q5VYP0 1347 aa32.15■■■□□ 2.74
TDP1-206ENST00000553569 SBNO1A3KN83 1393 aa32.13■■■□□ 2.73
TDP1-206ENST00000553569 ACEP12821 1306 aa32.13■■■□□ 2.73
TDP1-206ENST00000553569 POLR3AO14802 1390 aaPredicted RBP32.12■■■□□ 2.73
TDP1-206ENST00000553569 PLEKHG3A1L390 1219 aa32.12■■■□□ 2.73
TDP1-206ENST00000553569 MEX3CQ5U5Q3 659 aaKnown RBP32.12■■■□□ 2.73
TDP1-206ENST00000553569 TESK2Q96S53 571 aa32.12■■■□□ 2.73
TDP1-206ENST00000553569 LMOD2Q6P5Q4 547 aa32.11■■■□□ 2.73
TDP1-206ENST00000553569 ATAD2Q6PL18 1390 aa32.1■■■□□ 2.73
TDP1-206ENST00000553569 CABP1Q9NZU7 370 aa32.09■■■□□ 2.73
TDP1-206ENST00000553569 ALS2Q96Q42 1657 aa32.08■■■□□ 2.73
TDP1-206ENST00000553569 PAK3O75914 559 aaPredicted RBP32.07■■■□□ 2.72
TDP1-206ENST00000553569 PLEKHG5O94827 1062 aa32.06■■■□□ 2.72
TDP1-206ENST00000553569 ARHGEF10O15013 1369 aa32.06■■■□□ 2.72
TDP1-206ENST00000553569 ADAMTS2O95450 1211 aa32.03■■■□□ 2.72
TDP1-206ENST00000553569 ABCA3Q99758 1704 aa32.01■■■□□ 2.72
TDP1-206ENST00000553569 AKAP12Q02952 1782 aa32.01■■■□□ 2.71
TDP1-206ENST00000553569 SLC24A1O60721 1099 aa32■■■□□ 2.71
TDP1-206ENST00000553569 TMF1P82094 1093 aa32■■■□□ 2.71
TDP1-206ENST00000553569 TMC1Q8TDI8 760 aa31.98■■■□□ 2.71
TDP1-206ENST00000553569 USP6P35125 1406 aa31.98■■■□□ 2.71
TDP1-206ENST00000553569 HAP1P54257 671 aaPredicted RBP31.97■■■□□ 2.71
TDP1-206ENST00000553569 EIF4G2P78344 907 aaKnown RBP eCLIP31.97■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms