RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 TRPC5Q9UL62 973 aaPredicted RBP13.79□□□□□ -0.2
SYNE2-209ENST00000553308 RRBP1Q9P2E9 1410 aaKnown RBP13.79□□□□□ -0.2
SYNE2-209ENST00000553308 FNBP4Q8N3X1 1017 aaPredicted RBP13.78□□□□□ -0.2
SYNE2-209ENST00000553308 PXDNQ92626 1479 aa13.78□□□□□ -0.2
SYNE2-209ENST00000553308 RPGRIP1LQ68CZ1 1315 aa13.77□□□□□ -0.21
SYNE2-209ENST00000553308 MARF1Q9Y4F3 1742 aaKnown RBP13.76□□□□□ -0.21
SYNE2-209ENST00000553308 BCL9LQ86UU0 1499 aa13.75□□□□□ -0.21
SYNE2-209ENST00000553308 NPHP3Q7Z494 1330 aa13.75□□□□□ -0.21
SYNE2-209ENST00000553308 XPCQ01831 940 aaPredicted RBP13.75□□□□□ -0.21
SYNE2-209ENST00000553308 ESCO1Q5FWF5 840 aa13.75□□□□□ -0.21
SYNE2-209ENST00000553308 SLC4A1APQ9BWU0 796 aaKnown RBP13.74□□□□□ -0.21
SYNE2-209ENST00000553308 FOXO3O43524 673 aa13.73□□□□□ -0.21
SYNE2-209ENST00000553308 ADGRF5Q8IZF2 1346 aa13.72□□□□□ -0.21
SYNE2-209ENST00000553308 NUTM2FA1L443 756 aa13.72□□□□□ -0.21
SYNE2-209ENST00000553308 FOXD1Q16676 465 aa13.72□□□□□ -0.21
SYNE2-209ENST00000553308 TECPR2O15040 1411 aa13.72□□□□□ -0.21
SYNE2-209ENST00000553308 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.71□□□□□ -0.21
SYNE2-209ENST00000553308 PLEKHH1Q9ULM0 1364 aa13.71□□□□□ -0.22
SYNE2-209ENST00000553308 KNDC1Q76NI1 1749 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 WAPLQ7Z5K2 1190 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 STK26Q9P289 416 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 GLI3P10071 1580 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 FMN2Q9NZ56 1722 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 IFT172Q9UG01 1749 aa13.7□□□□□ -0.22
SYNE2-209ENST00000553308 LRPPRCP42704 1394 aaKnown RBP13.7□□□□□ -0.22
SYNE2-209ENST00000553308 GJD4Q96KN9 370 aaPredicted RBP13.69□□□□□ -0.22
SYNE2-209ENST00000553308 ZRANB1Q9UGI0 708 aa13.69□□□□□ -0.22
SYNE2-209ENST00000553308 RALGAPBQ86X10 1494 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 CCDC144AA2RUR9 1427 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 SPATA31E1Q6ZUB1 1445 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 KIF1AQ12756 1690 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 SLIT2O94813 1529 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 USP32Q8NFA0 1604 aa13.68□□□□□ -0.22
SYNE2-209ENST00000553308 RGL3Q3MIN7 710 aa13.67□□□□□ -0.22
SYNE2-209ENST00000553308 TMEM132EQ6IEE7 984 aa13.67□□□□□ -0.22
SYNE2-209ENST00000553308 SPATA31A3Q5VYP0 1347 aa13.66□□□□□ -0.22
SYNE2-209ENST00000553308 PIK3C2GO75747 1445 aa13.66□□□□□ -0.22
SYNE2-209ENST00000553308 CCDC125Q86Z20 511 aa13.66□□□□□ -0.22
SYNE2-209ENST00000553308 ABCC11Q96J66 1382 aa13.66□□□□□ -0.22
SYNE2-209ENST00000553308 ANKRD30BQ9BXX2 1392 aa13.66□□□□□ -0.22
SYNE2-209ENST00000553308 UNC5CLQ8IV45 518 aa13.65□□□□□ -0.22
SYNE2-209ENST00000553308 YTHDC2Q9H6S0 1430 aaKnown RBP13.64□□□□□ -0.23
SYNE2-209ENST00000553308 BRWD3Q6RI45 1802 aa13.64□□□□□ -0.23
SYNE2-209ENST00000553308 BLMP54132 1417 aaPredicted RBP13.64□□□□□ -0.23
SYNE2-209ENST00000553308 EP400Q96L91 3159 aa13.63□□□□□ -0.23
SYNE2-209ENST00000553308 TNS3Q68CZ2 1445 aa13.63□□□□□ -0.23
SYNE2-209ENST00000553308 RGPD8O14715 1765 aaPredicted RBP13.63□□□□□ -0.23
SYNE2-209ENST00000553308 PLCH1Q4KWH8 1693 aa13.63□□□□□ -0.23
SYNE2-209ENST00000553308 ABCA3Q99758 1704 aa13.62□□□□□ -0.23
SYNE2-209ENST00000553308 KRT28Q7Z3Y7 464 aa13.62□□□□□ -0.23
SYNE2-209ENST00000553308 PLEKHG5O94827 1062 aa13.61□□□□□ -0.23
SYNE2-209ENST00000553308 DEFB132Q7Z7B7 95 aa13.61□□□□□ -0.23
SYNE2-209ENST00000553308 CABLES1Q8TDN4 633 aa13.61□□□□□ -0.23
SYNE2-209ENST00000553308 HAP1P54257 671 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-209ENST00000553308 SEPT12Q8IYM1 358 aa13.6□□□□□ -0.23
SYNE2-209ENST00000553308 MPHOSPH9Q99550 1183 aa13.6□□□□□ -0.23
SYNE2-209ENST00000553308 NWD2Q9ULI1 1742 aa13.6□□□□□ -0.23
SYNE2-209ENST00000553308 PHF8Q9UPP1 1060 aa13.6□□□□□ -0.23
SYNE2-209ENST00000553308 SRCAPQ6ZRS2 3230 aa13.59□□□□□ -0.23
SYNE2-209ENST00000553308 NRXN1Q9ULB1 1477 aa13.59□□□□□ -0.23
SYNE2-209ENST00000553308 VPS72Q15906 364 aa13.58□□□□□ -0.24
SYNE2-209ENST00000553308 SBNO1A3KN83 1393 aa13.58□□□□□ -0.24
SYNE2-209ENST00000553308 PSME1Q06323 249 aa13.57□□□□□ -0.24
SYNE2-209ENST00000553308 SAFB2Q14151 953 aaKnown RBP eCLIP13.57□□□□□ -0.24
SYNE2-209ENST00000553308 SIRT1Q96EB6 747 aa13.57□□□□□ -0.24
SYNE2-209ENST00000553308 CCDC9Q9Y3X0 531 aaKnown RBP13.57□□□□□ -0.24
SYNE2-209ENST00000553308 SF3B2Q13435 895 aaKnown RBP13.56□□□□□ -0.24
SYNE2-209ENST00000553308 CFAP70Q5T0N1 1121 aa13.56□□□□□ -0.24
SYNE2-209ENST00000553308 LMOD2Q6P5Q4 547 aa13.56□□□□□ -0.24
SYNE2-209ENST00000553308 C14orf93Q9H972 538 aaKnown RBP13.56□□□□□ -0.24
SYNE2-209ENST00000553308 ARHGEF10O15013 1369 aa13.56□□□□□ -0.24
SYNE2-209ENST00000553308 NRAPQ86VF7 1730 aa13.56□□□□□ -0.24
SYNE2-209ENST00000553308 KRT27Q7Z3Y8 459 aa13.55□□□□□ -0.24
SYNE2-209ENST00000553308 PRAM1Q96QH2 718 aa13.55□□□□□ -0.24
SYNE2-209ENST00000553308 DHX57Q6P158 1386 aaKnown RBP13.55□□□□□ -0.24
SYNE2-209ENST00000553308 LRP5O75197 1615 aa13.54□□□□□ -0.24
SYNE2-209ENST00000553308 TRPM3Q9HCF6 1732 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-209ENST00000553308 ONECUT3O60422 494 aaPredicted RBP13.54□□□□□ -0.24
SYNE2-209ENST00000553308 PMFBP1Q8TBY8 1022 aa13.54□□□□□ -0.24
SYNE2-209ENST00000553308 DLC1Q96QB1 1528 aa13.54□□□□□ -0.24
SYNE2-209ENST00000553308 ADGRB2O60241 1585 aa13.54□□□□□ -0.24
SYNE2-209ENST00000553308 FAM83GA6ND36 823 aa13.53□□□□□ -0.24
SYNE2-209ENST00000553308 ANKARQ7Z5J8 1434 aa13.53□□□□□ -0.24
SYNE2-209ENST00000553308 A0A0G2JS52 829 aa13.52□□□□□ -0.25
SYNE2-209ENST00000553308 MYT1Q01538 1121 aa13.52□□□□□ -0.25
SYNE2-209ENST00000553308 ALS2Q96Q42 1657 aa13.52□□□□□ -0.25
SYNE2-209ENST00000553308 ADGRB1O14514 1584 aa13.51□□□□□ -0.25
SYNE2-209ENST00000553308 COL14A1Q05707 1796 aaKnown RBP13.5□□□□□ -0.25
SYNE2-209ENST00000553308 PSDA5PKW4 1024 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-209ENST00000553308 FAM98CQ17RN3 349 aaKnown RBP13.5□□□□□ -0.25
SYNE2-209ENST00000553308 POGKQ9P215 609 aa13.5□□□□□ -0.25
SYNE2-209ENST00000553308 BAG6P46379 1132 aa13.49□□□□□ -0.25
SYNE2-209ENST00000553308 HIRIP3Q9BW71 556 aaPredicted RBP13.49□□□□□ -0.25
SYNE2-209ENST00000553308 BTG4Q9NY30 223 aa13.49□□□□□ -0.25
SYNE2-209ENST00000553308 CRYBG1Q9Y4K1 1723 aa13.49□□□□□ -0.25
SYNE2-209ENST00000553308 PRR36Q9H6K5 1346 aa13.48□□□□□ -0.25
SYNE2-209ENST00000553308 TULP4Q9NRJ4 1543 aa13.48□□□□□ -0.25
SYNE2-209ENST00000553308 RGPD1P0DJD0 1748 aa13.47□□□□□ -0.25
SYNE2-209ENST00000553308 GPRASP1Q5JY77 1395 aa13.47□□□□□ -0.25
SYNE2-209ENST00000553308 THSD7AQ9UPZ6 1657 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms