RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CADPS2Q86UW7 1296 aa20.28■□□□□ 0.84
PTCH1-226ENST00000553011 NBPF8Q3BBV2 869 aa20.27■□□□□ 0.84
PTCH1-226ENST00000553011 SIRT1Q96EB6 747 aa20.27■□□□□ 0.84
PTCH1-226ENST00000553011 SLAIN2Q9P270 581 aa20.27■□□□□ 0.84
PTCH1-226ENST00000553011 PRAM1Q96QH2 718 aa20.26■□□□□ 0.83
PTCH1-226ENST00000553011 SAFB2Q14151 953 aaKnown RBP eCLIP20.25■□□□□ 0.83
PTCH1-226ENST00000553011 CDC42BPGQ6DT37 1551 aa20.25■□□□□ 0.83
PTCH1-226ENST00000553011 POGKQ9P215 609 aa20.24■□□□□ 0.83
PTCH1-226ENST00000553011 MST1RQ04912 1400 aa20.24■□□□□ 0.83
PTCH1-226ENST00000553011 HSPA1LP34931 641 aa20.22■□□□□ 0.83
PTCH1-226ENST00000553011 FMN2Q9NZ56 1722 aa20.2■□□□□ 0.82
PTCH1-226ENST00000553011 ROCK2O75116 1388 aaKnown RBP20.2■□□□□ 0.82
PTCH1-226ENST00000553011 RGPD8O14715 1765 aaPredicted RBP20.18■□□□□ 0.82
PTCH1-226ENST00000553011 C1orf167Q5SNV9 1468 aa20.18■□□□□ 0.82
PTCH1-226ENST00000553011 RALGAPBQ86X10 1494 aa20.18■□□□□ 0.82
PTCH1-226ENST00000553011 ADGRB2O60241 1585 aa20.17■□□□□ 0.82
PTCH1-226ENST00000553011 MINK1Q8N4C8 1332 aaPredicted RBP20.17■□□□□ 0.82
PTCH1-226ENST00000553011 PHLPP1O60346 1717 aa20.16■□□□□ 0.82
PTCH1-226ENST00000553011 BRINP3Q76B58 766 aa20.16■□□□□ 0.82
PTCH1-226ENST00000553011 HIRIP3Q9BW71 556 aaPredicted RBP20.16■□□□□ 0.82
PTCH1-226ENST00000553011 GPRASP1Q5JY77 1395 aa20.16■□□□□ 0.82
PTCH1-226ENST00000553011 NUTM2FA1L443 756 aa20.15■□□□□ 0.82
PTCH1-226ENST00000553011 QRICH2Q9H0J4 1663 aa20.15■□□□□ 0.82
PTCH1-226ENST00000553011 TIMELESSQ9UNS1 1208 aa20.14■□□□□ 0.81
PTCH1-226ENST00000553011 ORAI2Q96SN7 254 aa20.13■□□□□ 0.81
PTCH1-226ENST00000553011 NHSL1Q5SYE7 1610 aa20.13■□□□□ 0.81
PTCH1-226ENST00000553011 AHDC1Q5TGY3 1603 aaPredicted RBP20.13■□□□□ 0.81
PTCH1-226ENST00000553011 CENPJQ9HC77 1338 aaPredicted RBP20.11■□□□□ 0.81
PTCH1-226ENST00000553011 CARD11Q9BXL7 1154 aa20.11■□□□□ 0.81
PTCH1-226ENST00000553011 USP32Q8NFA0 1604 aa20.11■□□□□ 0.81
PTCH1-226ENST00000553011 COL16A1Q07092 1604 aaPredicted RBP20.1■□□□□ 0.81
PTCH1-226ENST00000553011 DDX17Q92841 729 aaKnown RBP20.09■□□□□ 0.81
PTCH1-226ENST00000553011 WASLO00401 505 aaPredicted RBP20.08■□□□□ 0.81
PTCH1-226ENST00000553011 ESCO1Q5FWF5 840 aa20.08■□□□□ 0.81
PTCH1-226ENST00000553011 TULP4Q9NRJ4 1543 aa20.07■□□□□ 0.8
PTCH1-226ENST00000553011 EIF3AQ14152 1382 aaKnown RBP20.06■□□□□ 0.8
PTCH1-226ENST00000553011 ANKARQ7Z5J8 1434 aa20.05■□□□□ 0.8
PTCH1-226ENST00000553011 KIF1AQ12756 1690 aa20.05■□□□□ 0.8
PTCH1-226ENST00000553011 PRR36Q9H6K5 1346 aa20.04■□□□□ 0.8
PTCH1-226ENST00000553011 CDK19Q9BWU1 502 aa20.03■□□□□ 0.8
PTCH1-226ENST00000553011 ITSN1Q15811 1721 aa20.02■□□□□ 0.8
PTCH1-226ENST00000553011 ATP7BP35670 1465 aa20.02■□□□□ 0.8
PTCH1-226ENST00000553011 FOXO3O43524 673 aa20.01■□□□□ 0.79
PTCH1-226ENST00000553011 PHF8Q9UPP1 1060 aa20.01■□□□□ 0.79
PTCH1-226ENST00000553011 TOPAZ1Q8N9V7 1692 aa20■□□□□ 0.79
PTCH1-226ENST00000553011 NUDT16Q96DE0 195 aaKnown RBP19.99■□□□□ 0.79
PTCH1-226ENST00000553011 SHPRHQ149N8 1683 aa19.99■□□□□ 0.79
PTCH1-226ENST00000553011 NPHP3Q7Z494 1330 aa19.99■□□□□ 0.79
PTCH1-226ENST00000553011 PXDNQ92626 1479 aa19.99■□□□□ 0.79
PTCH1-226ENST00000553011 XPCQ01831 940 aaPredicted RBP19.98■□□□□ 0.79
PTCH1-226ENST00000553011 PMFBP1Q8TBY8 1022 aa19.98■□□□□ 0.79
PTCH1-226ENST00000553011 SOS2Q07890 1332 aaPredicted RBP19.98■□□□□ 0.79
PTCH1-226ENST00000553011 JCADQ9P266 1359 aa19.97■□□□□ 0.79
PTCH1-226ENST00000553011 SRPK2P78362 688 aaKnown RBP19.97■□□□□ 0.79
PTCH1-226ENST00000553011 CABP2Q9NPB3 220 aa19.97■□□□□ 0.79
PTCH1-226ENST00000553011 USP47Q96K76 1375 aa19.96■□□□□ 0.79
PTCH1-226ENST00000553011 EVC2Q86UK5 1308 aa19.96■□□□□ 0.79
PTCH1-226ENST00000553011 SBNO2Q9Y2G9 1366 aa19.95■□□□□ 0.79
PTCH1-226ENST00000553011 ST20-MTHFSA0A0A6YYL1 179 aa19.95■□□□□ 0.78
PTCH1-226ENST00000553011 MED1Q15648 1581 aaPredicted RBP19.95■□□□□ 0.78
PTCH1-226ENST00000553011 LRRC59Q96AG4 307 aaKnown RBP19.94■□□□□ 0.78
PTCH1-226ENST00000553011 KRT28Q7Z3Y7 464 aa19.92■□□□□ 0.78
PTCH1-226ENST00000553011 CCDC61Q9Y6R9 512 aa19.92■□□□□ 0.78
PTCH1-226ENST00000553011 TESK2Q96S53 571 aa19.91■□□□□ 0.78
PTCH1-226ENST00000553011 PNPLA6Q8IY17 1366 aa19.91■□□□□ 0.78
PTCH1-226ENST00000553011 TRPM3Q9HCF6 1732 aaPredicted RBP19.9■□□□□ 0.78
PTCH1-226ENST00000553011 PSME1Q06323 249 aa19.9■□□□□ 0.78
PTCH1-226ENST00000553011 NGDNQ8NEJ9 315 aaKnown RBP19.9■□□□□ 0.78
PTCH1-226ENST00000553011 PPIP5K1Q6PFW1 1433 aa19.9■□□□□ 0.78
PTCH1-226ENST00000553011 PLEKHG3A1L390 1219 aa19.88■□□□□ 0.77
PTCH1-226ENST00000553011 LRP6O75581 1613 aa19.87■□□□□ 0.77
PTCH1-226ENST00000553011 COL22A1Q8NFW1 1626 aaPredicted RBP19.87■□□□□ 0.77
PTCH1-226ENST00000553011 ACEP12821 1306 aa19.87■□□□□ 0.77
PTCH1-226ENST00000553011 SPATA31A6Q5VVP1 1343 aa19.87■□□□□ 0.77
PTCH1-226ENST00000553011 SPATA31A3Q5VYP0 1347 aa19.87■□□□□ 0.77
PTCH1-226ENST00000553011 TNS3Q68CZ2 1445 aa19.86■□□□□ 0.77
PTCH1-226ENST00000553011 POLR3AO14802 1390 aaPredicted RBP19.86■□□□□ 0.77
PTCH1-226ENST00000553011 CABP1Q9NZU7 370 aa19.86■□□□□ 0.77
PTCH1-226ENST00000553011 SBNO1A3KN83 1393 aa19.85■□□□□ 0.77
PTCH1-226ENST00000553011 ALS2Q96Q42 1657 aa19.85■□□□□ 0.77
PTCH1-226ENST00000553011 NUTM2BA6NNL0 878 aaPredicted RBP19.85■□□□□ 0.77
PTCH1-226ENST00000553011 NUTM2EB1AL46 878 aaPredicted RBP19.85■□□□□ 0.77
PTCH1-226ENST00000553011 NUTM2AQ8IVF1 878 aaPredicted RBP19.85■□□□□ 0.77
PTCH1-226ENST00000553011 ATAD2Q6PL18 1390 aa19.84■□□□□ 0.77
PTCH1-226ENST00000553011 AKAP12Q02952 1782 aa19.84■□□□□ 0.77
PTCH1-226ENST00000553011 DISP3Q9P2K9 1392 aa19.83■□□□□ 0.77
PTCH1-226ENST00000553011 LMOD2Q6P5Q4 547 aa19.82■□□□□ 0.76
PTCH1-226ENST00000553011 HSPA5P11021 654 aaKnown RBP19.81■□□□□ 0.76
PTCH1-226ENST00000553011 ABCA3Q99758 1704 aa19.8■□□□□ 0.76
PTCH1-226ENST00000553011 PAK3O75914 559 aaPredicted RBP19.8■□□□□ 0.76
PTCH1-226ENST00000553011 EIF4G2P78344 907 aaKnown RBP eCLIP19.8■□□□□ 0.76
PTCH1-226ENST00000553011 TMF1P82094 1093 aa19.8■□□□□ 0.76
PTCH1-226ENST00000553011 SLC24A1O60721 1099 aa19.79■□□□□ 0.76
PTCH1-226ENST00000553011 PLEKHG5O94827 1062 aa19.79■□□□□ 0.76
PTCH1-226ENST00000553011 PUS7Q96PZ0 661 aaKnown RBP19.79■□□□□ 0.76
PTCH1-226ENST00000553011 ARHGEF10O15013 1369 aa19.79■□□□□ 0.76
PTCH1-226ENST00000553011 MARF1Q9Y4F3 1742 aaKnown RBP19.79■□□□□ 0.76
PTCH1-226ENST00000553011 MEX3CQ5U5Q3 659 aaKnown RBP19.78■□□□□ 0.76
PTCH1-226ENST00000553011 TMC1Q8TDI8 760 aa19.78■□□□□ 0.76
PTCH1-226ENST00000553011 MON2Q7Z3U7 1717 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms