RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NUTM2BA6NNL0 878 aaPredicted RBP24.02■■□□□ 1.44
VPS29-207ENST00000549970 NUTM2EB1AL46 878 aaPredicted RBP24.02■■□□□ 1.44
VPS29-207ENST00000549970 NUTM2AQ8IVF1 878 aaPredicted RBP24.02■■□□□ 1.44
VPS29-207ENST00000549970 LRRC59Q96AG4 307 aaKnown RBP24.02■■□□□ 1.44
VPS29-207ENST00000549970 CDC42BPGQ6DT37 1551 aa24.02■■□□□ 1.44
VPS29-207ENST00000549970 HRCP23327 699 aa24.01■■□□□ 1.43
VPS29-207ENST00000549970 C14orf93Q9H972 538 aaKnown RBP24.01■■□□□ 1.43
VPS29-207ENST00000549970 PLEKHH1Q9ULM0 1364 aa24.01■■□□□ 1.43
VPS29-207ENST00000549970 CFAP70Q5T0N1 1121 aa24■■□□□ 1.43
VPS29-207ENST00000549970 LAMC1P11047 1609 aa23.99■■□□□ 1.43
VPS29-207ENST00000549970 PNPLA6Q8IY17 1366 aa23.97■■□□□ 1.43
VPS29-207ENST00000549970 NUTM2FA1L443 756 aa23.96■■□□□ 1.43
VPS29-207ENST00000549970 ESCO1Q5FWF5 840 aa23.96■■□□□ 1.43
VPS29-207ENST00000549970 DHX57Q6P158 1386 aaKnown RBP23.95■■□□□ 1.42
VPS29-207ENST00000549970 SOS2Q07890 1332 aaPredicted RBP23.94■■□□□ 1.42
VPS29-207ENST00000549970 ZNF772Q68DY9 489 aaPredicted RBP23.93■■□□□ 1.42
VPS29-207ENST00000549970 KDM2AQ9Y2K7 1162 aa23.93■■□□□ 1.42
VPS29-207ENST00000549970 DCAF11Q8TEB1 546 aa23.92■■□□□ 1.42
VPS29-207ENST00000549970 SIRT1Q96EB6 747 aa23.91■■□□□ 1.42
VPS29-207ENST00000549970 FMN2Q9NZ56 1722 aa23.9■■□□□ 1.42
VPS29-207ENST00000549970 NPHP3Q7Z494 1330 aa23.89■■□□□ 1.42
VPS29-207ENST00000549970 SAFB2Q14151 953 aaKnown RBP eCLIP23.89■■□□□ 1.41
VPS29-207ENST00000549970 FOXO3O43524 673 aa23.88■■□□□ 1.41
VPS29-207ENST00000549970 PRAM1Q96QH2 718 aa23.88■■□□□ 1.41
VPS29-207ENST00000549970 AFF2P51816 1311 aa23.87■■□□□ 1.41
VPS29-207ENST00000549970 C8orf37Q96NL8 207 aa23.87■■□□□ 1.41
VPS29-207ENST00000549970 ADGRB1O14514 1584 aa23.86■■□□□ 1.41
VPS29-207ENST00000549970 XPCQ01831 940 aaPredicted RBP23.86■■□□□ 1.41
VPS29-207ENST00000549970 ADAMTS2O95450 1211 aa23.85■■□□□ 1.41
VPS29-207ENST00000549970 POGKQ9P215 609 aa23.85■■□□□ 1.41
VPS29-207ENST00000549970 PXDNQ92626 1479 aa23.85■■□□□ 1.41
VPS29-207ENST00000549970 DLC1Q96QB1 1528 aa23.84■■□□□ 1.41
VPS29-207ENST00000549970 TRAK1Q9UPV9 953 aa23.83■■□□□ 1.41
VPS29-207ENST00000549970 STAC3Q96MF2 364 aa23.82■■□□□ 1.4
VPS29-207ENST00000549970 RGPD8O14715 1765 aaPredicted RBP23.81■■□□□ 1.4
VPS29-207ENST00000549970 KIF1AQ12756 1690 aa23.81■■□□□ 1.4
VPS29-207ENST00000549970 COL22A1Q8NFW1 1626 aaPredicted RBP23.81■■□□□ 1.4
VPS29-207ENST00000549970 RXRBP28702 533 aa23.79■■□□□ 1.4
VPS29-207ENST00000549970 NGLY1Q96IV0 654 aa23.79■■□□□ 1.4
VPS29-207ENST00000549970 HIRIP3Q9BW71 556 aaPredicted RBP23.76■■□□□ 1.39
VPS29-207ENST00000549970 PHF8Q9UPP1 1060 aa23.76■■□□□ 1.39
VPS29-207ENST00000549970 ADGRB2O60241 1585 aa23.75■■□□□ 1.39
VPS29-207ENST00000549970 QTRT2Q9H974 415 aaKnown RBP23.75■■□□□ 1.39
VPS29-207ENST00000549970 MINK1Q8N4C8 1332 aaPredicted RBP23.75■■□□□ 1.39
VPS29-207ENST00000549970 KRT28Q7Z3Y7 464 aa23.74■■□□□ 1.39
VPS29-207ENST00000549970 SPATA31A3Q5VYP0 1347 aa23.72■■□□□ 1.39
VPS29-207ENST00000549970 USP32Q8NFA0 1604 aa23.72■■□□□ 1.39
VPS29-207ENST00000549970 ANKARQ7Z5J8 1434 aa23.71■■□□□ 1.39
VPS29-207ENST00000549970 USP21Q9UK80 565 aa23.71■■□□□ 1.39
VPS29-207ENST00000549970 ARHGEF28Q8N1W1 1705 aaKnown RBP23.7■■□□□ 1.39
VPS29-207ENST00000549970 CDK12Q9NYV4 1490 aaPredicted RBP23.7■■□□□ 1.38
VPS29-207ENST00000549970 RBM6P78332 1123 aaKnown RBP23.7■■□□□ 1.38
VPS29-207ENST00000549970 PMFBP1Q8TBY8 1022 aa23.7■■□□□ 1.38
VPS29-207ENST00000549970 PSME1Q06323 249 aa23.69■■□□□ 1.38
VPS29-207ENST00000549970 MARF1Q9Y4F3 1742 aaKnown RBP23.68■■□□□ 1.38
VPS29-207ENST00000549970 FNBP4Q8N3X1 1017 aaPredicted RBP23.68■■□□□ 1.38
VPS29-207ENST00000549970 TNS3Q68CZ2 1445 aa23.67■■□□□ 1.38
VPS29-207ENST00000549970 EIF3AQ14152 1382 aaKnown RBP23.67■■□□□ 1.38
VPS29-207ENST00000549970 WASLO00401 505 aaPredicted RBP23.67■■□□□ 1.38
VPS29-207ENST00000549970 PRR36Q9H6K5 1346 aa23.66■■□□□ 1.38
VPS29-207ENST00000549970 TULP4Q9NRJ4 1543 aa23.66■■□□□ 1.38
VPS29-207ENST00000549970 KIAA1210Q9ULL0 1709 aa23.66■■□□□ 1.38
VPS29-207ENST00000549970 RGS12O14924 1447 aa23.66■■□□□ 1.38
VPS29-207ENST00000549970 PLEKHG5O94827 1062 aa23.65■■□□□ 1.38
VPS29-207ENST00000549970 TRPC5Q9UL62 973 aaPredicted RBP23.65■■□□□ 1.38
VPS29-207ENST00000549970 LMOD2Q6P5Q4 547 aa23.64■■□□□ 1.37
VPS29-207ENST00000549970 SBNO1A3KN83 1393 aa23.64■■□□□ 1.37
VPS29-207ENST00000549970 HAP1P54257 671 aaPredicted RBP23.62■■□□□ 1.37
VPS29-207ENST00000549970 NBPF1Q3BBV0 1214 aa23.62■■□□□ 1.37
VPS29-207ENST00000549970 ATRNO75882 1429 aa23.61■■□□□ 1.37
VPS29-207ENST00000549970 CABLES1Q8TDN4 633 aa23.61■■□□□ 1.37
VPS29-207ENST00000549970 UPF1Q92900 1129 aaKnown RBP eCLIP23.61■■□□□ 1.37
VPS29-207ENST00000549970 SIN3AQ96ST3 1273 aa23.61■■□□□ 1.37
VPS29-207ENST00000549970 ARHGEF10O15013 1369 aa23.6■■□□□ 1.37
VPS29-207ENST00000549970 BCL9LQ86UU0 1499 aa23.6■■□□□ 1.37
VPS29-207ENST00000549970 GPRASP1Q5JY77 1395 aa23.58■■□□□ 1.37
VPS29-207ENST00000549970 L3MBTL2Q969R5 705 aa23.58■■□□□ 1.37
VPS29-207ENST00000549970 TRPM3Q9HCF6 1732 aaPredicted RBP23.58■■□□□ 1.37
VPS29-207ENST00000549970 ATP7BP35670 1465 aa23.57■■□□□ 1.36
VPS29-207ENST00000549970 NGDNQ8NEJ9 315 aaKnown RBP23.57■■□□□ 1.36
VPS29-207ENST00000549970 ABCA3Q99758 1704 aa23.56■■□□□ 1.36
VPS29-207ENST00000549970 NEUROD1Q13562 356 aa23.56■■□□□ 1.36
VPS29-207ENST00000549970 NUDT16Q96DE0 195 aaKnown RBP23.56■■□□□ 1.36
VPS29-207ENST00000549970 CDK19Q9BWU1 502 aa23.56■■□□□ 1.36
VPS29-207ENST00000549970 ITSN1Q15811 1721 aa23.56■■□□□ 1.36
VPS29-207ENST00000549970 SLIT2O94813 1529 aa23.55■■□□□ 1.36
VPS29-207ENST00000549970 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.53■■□□□ 1.36
VPS29-207ENST00000549970 UNC5CLQ8IV45 518 aa23.53■■□□□ 1.36
VPS29-207ENST00000549970 ALS2Q96Q42 1657 aa23.53■■□□□ 1.36
VPS29-207ENST00000549970 PAK3O75914 559 aaPredicted RBP23.52■■□□□ 1.36
VPS29-207ENST00000549970 GJD4Q96KN9 370 aaPredicted RBP23.52■■□□□ 1.36
VPS29-207ENST00000549970 CENPJQ9HC77 1338 aaPredicted RBP23.5■■□□□ 1.35
VPS29-207ENST00000549970 PLCH1Q4KWH8 1693 aa23.49■■□□□ 1.35
VPS29-207ENST00000549970 TOPAZ1Q8N9V7 1692 aa23.48■■□□□ 1.35
VPS29-207ENST00000549970 CCDC61Q9Y6R9 512 aa23.47■■□□□ 1.35
VPS29-207ENST00000549970 RALGAPBQ86X10 1494 aa23.47■■□□□ 1.35
VPS29-207ENST00000549970 TRPM1Q7Z4N2 1603 aa23.47■■□□□ 1.35
VPS29-207ENST00000549970 GLI3P10071 1580 aa23.46■■□□□ 1.35
VPS29-207ENST00000549970 ATAD2Q6PL18 1390 aa23.46■■□□□ 1.35
VPS29-207ENST00000549970 QRICH2Q9H0J4 1663 aa23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms