RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 NEUROD1Q13562 356 aa10.51□□□□□ -0.73
PTCH1-219ENST00000549678 SIRT1Q96EB6 747 aa10.51□□□□□ -0.73
PTCH1-219ENST00000549678 CDC42BPGQ6DT37 1551 aa10.51□□□□□ -0.73
PTCH1-219ENST00000549678 KNDC1Q76NI1 1749 aa10.5□□□□□ -0.73
PTCH1-219ENST00000549678 PCGF6Q9BYE7 350 aa10.5□□□□□ -0.73
PTCH1-219ENST00000549678 SOS2Q07890 1332 aaPredicted RBP10.5□□□□□ -0.73
PTCH1-219ENST00000549678 PNPLA6Q8IY17 1366 aa10.5□□□□□ -0.73
PTCH1-219ENST00000549678 STAC3Q96MF2 364 aa10.49□□□□□ -0.73
PTCH1-219ENST00000549678 NPHP3Q7Z494 1330 aa10.49□□□□□ -0.73
PTCH1-219ENST00000549678 DHX57Q6P158 1386 aaKnown RBP10.49□□□□□ -0.73
PTCH1-219ENST00000549678 CDK12Q9NYV4 1490 aaPredicted RBP10.49□□□□□ -0.73
PTCH1-219ENST00000549678 CFAP70Q5T0N1 1121 aa10.48□□□□□ -0.73
PTCH1-219ENST00000549678 TMEM132EQ6IEE7 984 aa10.48□□□□□ -0.73
PTCH1-219ENST00000549678 C14orf93Q9H972 538 aaKnown RBP10.48□□□□□ -0.73
PTCH1-219ENST00000549678 NRXN1Q9ULB1 1477 aa10.48□□□□□ -0.73
PTCH1-219ENST00000549678 NUTM2BA6NNL0 878 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-219ENST00000549678 NUTM2EB1AL46 878 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-219ENST00000549678 RXRBP28702 533 aa10.47□□□□□ -0.73
PTCH1-219ENST00000549678 NUTM2AQ8IVF1 878 aaPredicted RBP10.47□□□□□ -0.73
PTCH1-219ENST00000549678 ORAI2Q96SN7 254 aa10.47□□□□□ -0.73
PTCH1-219ENST00000549678 SIN3AQ96ST3 1273 aa10.47□□□□□ -0.73
PTCH1-219ENST00000549678 YTHDC2Q9H6S0 1430 aaKnown RBP10.47□□□□□ -0.73
PTCH1-219ENST00000549678 AFF2P51816 1311 aa10.46□□□□□ -0.73
PTCH1-219ENST00000549678 TONSLQ96HA7 1378 aa10.45□□□□□ -0.74
PTCH1-219ENST00000549678 ESCO1Q5FWF5 840 aa10.45□□□□□ -0.74
PTCH1-219ENST00000549678 DDX17Q92841 729 aaKnown RBP10.45□□□□□ -0.74
PTCH1-219ENST00000549678 POGKQ9P215 609 aa10.45□□□□□ -0.74
PTCH1-219ENST00000549678 KIAA1210Q9ULL0 1709 aa10.44□□□□□ -0.74
PTCH1-219ENST00000549678 RBM6P78332 1123 aaKnown RBP10.44□□□□□ -0.74
PTCH1-219ENST00000549678 SAFB2Q14151 953 aaKnown RBP eCLIP10.44□□□□□ -0.74
PTCH1-219ENST00000549678 WAPLQ7Z5K2 1190 aa10.44□□□□□ -0.74
PTCH1-219ENST00000549678 NGLY1Q96IV0 654 aa10.43□□□□□ -0.74
PTCH1-219ENST00000549678 C8orf37Q96NL8 207 aa10.43□□□□□ -0.74
PTCH1-219ENST00000549678 TRAK1Q9UPV9 953 aa10.43□□□□□ -0.74
PTCH1-219ENST00000549678 COL22A1Q8NFW1 1626 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-219ENST00000549678 DLC1Q96QB1 1528 aa10.43□□□□□ -0.74
PTCH1-219ENST00000549678 PXDNQ92626 1479 aa10.42□□□□□ -0.74
PTCH1-219ENST00000549678 FNBP4Q8N3X1 1017 aaPredicted RBP10.42□□□□□ -0.74
PTCH1-219ENST00000549678 PLEKHH1Q9ULM0 1364 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 KIF1AQ12756 1690 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 FOXO3O43524 673 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 ADAMTS2O95450 1211 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 L3MBTL2Q969R5 705 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 PRAM1Q96QH2 718 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 QTRT2Q9H974 415 aaKnown RBP10.41□□□□□ -0.74
PTCH1-219ENST00000549678 ARHGEF28Q8N1W1 1705 aaKnown RBP10.41□□□□□ -0.74
PTCH1-219ENST00000549678 FMN2Q9NZ56 1722 aa10.41□□□□□ -0.74
PTCH1-219ENST00000549678 EIF3AQ14152 1382 aaKnown RBP10.4□□□□□ -0.74
PTCH1-219ENST00000549678 ADGRB1O14514 1584 aa10.4□□□□□ -0.74
PTCH1-219ENST00000549678 NUTM2FA1L443 756 aa10.4□□□□□ -0.74
PTCH1-219ENST00000549678 TRPC5Q9UL62 973 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-219ENST00000549678 SRCAPQ6ZRS2 3230 aa10.4□□□□□ -0.74
PTCH1-219ENST00000549678 ANKARQ7Z5J8 1434 aa10.4□□□□□ -0.75
PTCH1-219ENST00000549678 EP400Q96L91 3159 aa10.39□□□□□ -0.75
PTCH1-219ENST00000549678 PSME1Q06323 249 aa10.39□□□□□ -0.75
PTCH1-219ENST00000549678 UPF1Q92900 1129 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTCH1-219ENST00000549678 USP21Q9UK80 565 aa10.39□□□□□ -0.75
PTCH1-219ENST00000549678 TRPM1Q7Z4N2 1603 aa10.39□□□□□ -0.75
PTCH1-219ENST00000549678 SPATA31A3Q5VYP0 1347 aa10.38□□□□□ -0.75
PTCH1-219ENST00000549678 CCER1Q8TC90 406 aaPredicted RBP10.38□□□□□ -0.75
PTCH1-219ENST00000549678 PHF8Q9UPP1 1060 aa10.38□□□□□ -0.75
PTCH1-219ENST00000549678 SBNO1A3KN83 1393 aa10.38□□□□□ -0.75
PTCH1-219ENST00000549678 ROCK2O75116 1388 aaKnown RBP10.38□□□□□ -0.75
PTCH1-219ENST00000549678 MINK1Q8N4C8 1332 aaPredicted RBP10.37□□□□□ -0.75
PTCH1-219ENST00000549678 RGPD8O14715 1765 aaPredicted RBP10.37□□□□□ -0.75
PTCH1-219ENST00000549678 RGS12O14924 1447 aa10.37□□□□□ -0.75
PTCH1-219ENST00000549678 ADGRB2O60241 1585 aa10.37□□□□□ -0.75
PTCH1-219ENST00000549678 KRT28Q7Z3Y7 464 aa10.37□□□□□ -0.75
PTCH1-219ENST00000549678 ATRNO75882 1429 aa10.36□□□□□ -0.75
PTCH1-219ENST00000549678 TNS3Q68CZ2 1445 aa10.36□□□□□ -0.75
PTCH1-219ENST00000549678 HIRIP3Q9BW71 556 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-219ENST00000549678 QRICH2Q9H0J4 1663 aa10.36□□□□□ -0.75
PTCH1-219ENST00000549678 ARHGEF10O15013 1369 aa10.36□□□□□ -0.75
PTCH1-219ENST00000549678 ITSN1Q15811 1721 aa10.36□□□□□ -0.75
PTCH1-219ENST00000549678 XPCQ01831 940 aaPredicted RBP10.35□□□□□ -0.75
PTCH1-219ENST00000549678 NBPF1Q3BBV0 1214 aa10.35□□□□□ -0.75
PTCH1-219ENST00000549678 ATAD2Q6PL18 1390 aa10.34□□□□□ -0.75
PTCH1-219ENST00000549678 BCL9LQ86UU0 1499 aa10.34□□□□□ -0.75
PTCH1-219ENST00000549678 MARF1Q9Y4F3 1742 aaKnown RBP10.33□□□□□ -0.76
PTCH1-219ENST00000549678 WASLO00401 505 aaPredicted RBP10.33□□□□□ -0.76
PTCH1-219ENST00000549678 UNC5CLQ8IV45 518 aa10.33□□□□□ -0.76
PTCH1-219ENST00000549678 GPRASP1Q5JY77 1395 aa10.33□□□□□ -0.76
PTCH1-219ENST00000549678 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.33□□□□□ -0.76
PTCH1-219ENST00000549678 SLIT2O94813 1529 aa10.33□□□□□ -0.76
PTCH1-219ENST00000549678 TULP4Q9NRJ4 1543 aa10.33□□□□□ -0.76
PTCH1-219ENST00000549678 CLSPNQ9HAW4 1339 aa10.33□□□□□ -0.76
PTCH1-219ENST00000549678 CENPJQ9HC77 1338 aaPredicted RBP10.33□□□□□ -0.76
PTCH1-219ENST00000549678 HAP1P54257 671 aaPredicted RBP10.32□□□□□ -0.76
PTCH1-219ENST00000549678 GJD4Q96KN9 370 aaPredicted RBP10.32□□□□□ -0.76
PTCH1-219ENST00000549678 CARD11Q9BXL7 1154 aa10.32□□□□□ -0.76
PTCH1-219ENST00000549678 SRPK2P78362 688 aaKnown RBP10.31□□□□□ -0.76
PTCH1-219ENST00000549678 USP32Q8NFA0 1604 aa10.31□□□□□ -0.76
PTCH1-219ENST00000549678 RALGAPBQ86X10 1494 aa10.3□□□□□ -0.76
PTCH1-219ENST00000549678 CCDC125Q86Z20 511 aa10.3□□□□□ -0.76
PTCH1-219ENST00000549678 PMFBP1Q8TBY8 1022 aa10.3□□□□□ -0.76
PTCH1-219ENST00000549678 VPS72Q15906 364 aa10.29□□□□□ -0.76
PTCH1-219ENST00000549678 NBPF8Q3BBV2 869 aa10.29□□□□□ -0.76
PTCH1-219ENST00000549678 LMOD2Q6P5Q4 547 aa10.29□□□□□ -0.76
PTCH1-219ENST00000549678 NGDNQ8NEJ9 315 aaKnown RBP10.29□□□□□ -0.76
PTCH1-219ENST00000549678 PRR36Q9H6K5 1346 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms