RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 SEC24BO95487 1268 aa17.53■□□□□ 0.4
PRPF40B-209ENST00000548825 STAC3Q96MF2 364 aa17.53■□□□□ 0.4
PRPF40B-209ENST00000548825 CABP1Q9NZU7 370 aa17.53■□□□□ 0.4
PRPF40B-209ENST00000548825 EXOSC9Q06265 439 aaKnown RBP17.53■□□□□ 0.4
PRPF40B-209ENST00000548825 PLXNC1O60486 1568 aa17.53■□□□□ 0.4
PRPF40B-209ENST00000548825 ERVK-7P63135 1459 aa17.52■□□□□ 0.4
PRPF40B-209ENST00000548825 C8orf34Q49A92 452 aa17.52■□□□□ 0.4
PRPF40B-209ENST00000548825 RARSP54136 660 aaKnown RBP17.52■□□□□ 0.39
PRPF40B-209ENST00000548825 NKTRP30414 1462 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 SLC24A1O60721 1099 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 RIPK4P57078 832 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 FAM69CQ0P6D2 419 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 PCDHB15Q9Y5E8 787 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 KDM2BQ8NHM5 1336 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 RTEL1-TNFRSF6BF6WH68 1400 aa17.51■□□□□ 0.39
PRPF40B-209ENST00000548825 IL27Q8NEV9 243 aa17.5■□□□□ 0.39
PRPF40B-209ENST00000548825 ESF1Q9H501 851 aaKnown RBP17.5■□□□□ 0.39
PRPF40B-209ENST00000548825 NPATQ14207 1427 aa17.49■□□□□ 0.39
PRPF40B-209ENST00000548825 NFKBIBQ15653 356 aa17.49■□□□□ 0.39
PRPF40B-209ENST00000548825 PTPRTO14522 1441 aa17.49■□□□□ 0.39
PRPF40B-209ENST00000548825 MADDQ8WXG6 1647 aa17.49■□□□□ 0.39
PRPF40B-209ENST00000548825 TRPM2O94759 1503 aa17.49■□□□□ 0.39
PRPF40B-209ENST00000548825 FRAT2O75474 233 aaPredicted RBP17.48■□□□□ 0.39
PRPF40B-209ENST00000548825 NCKAP5LQ9HCH0 1330 aa17.48■□□□□ 0.39
PRPF40B-209ENST00000548825 MYH16Q9H6N6 1097 aa17.47■□□□□ 0.39
PRPF40B-209ENST00000548825 MFAP1P55081 439 aaKnown RBP17.47■□□□□ 0.39
PRPF40B-209ENST00000548825 PDZRN3Q9UPQ7 1066 aa17.47■□□□□ 0.39
PRPF40B-209ENST00000548825 PIK3C2GO75747 1445 aa17.46■□□□□ 0.39
PRPF40B-209ENST00000548825 CDK19Q9BWU1 502 aa17.46■□□□□ 0.39
PRPF40B-209ENST00000548825 UPF2Q9HAU5 1272 aaKnown RBP17.46■□□□□ 0.39
PRPF40B-209ENST00000548825 HDGFL2Q7Z4V5 671 aaPredicted RBP17.46■□□□□ 0.38
PRPF40B-209ENST00000548825 TERF2IPQ9NYB0 399 aa17.46■□□□□ 0.38
PRPF40B-209ENST00000548825 C1orf115Q9H7X2 142 aa17.45■□□□□ 0.38
PRPF40B-209ENST00000548825 ZRANB1Q9UGI0 708 aa17.45■□□□□ 0.38
PRPF40B-209ENST00000548825 SHROOM2Q13796 1616 aa17.44■□□□□ 0.38
PRPF40B-209ENST00000548825 APBB1O00213 710 aa17.44■□□□□ 0.38
PRPF40B-209ENST00000548825 TXNDC2Q86VQ3 553 aa17.44■□□□□ 0.38
PRPF40B-209ENST00000548825 ZKSCAN2Q63HK3 967 aa17.43■□□□□ 0.38
PRPF40B-209ENST00000548825 DZIP1LQ8IYY4 767 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-209ENST00000548825 PRKCSHP14314 528 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-209ENST00000548825 DIAPH1O60610 1272 aaKnown RBP17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 PRKAR2BP31323 418 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 FYB1O15117 783 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 PDE3AQ14432 1141 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 SSH1Q8WYL5 1049 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 NOB1Q9ULX3 412 aaKnown RBP17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 ZNF518AQ6AHZ1 1483 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 TMPOP42166 694 aaKnown RBP17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 RRS1Q15050 365 aaKnown RBP17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 UHRF1BP1LA0JNW5 1464 aa17.42■□□□□ 0.38
PRPF40B-209ENST00000548825 SPHKAPQ2M3C7 1700 aa17.41■□□□□ 0.38
PRPF40B-209ENST00000548825 TRMT2AQ8IZ69 625 aaKnown RBP17.41■□□□□ 0.38
PRPF40B-209ENST00000548825 RWDD1Q9H446 243 aaPredicted RBP17.41■□□□□ 0.38
PRPF40B-209ENST00000548825 DCTN1Q14203 1278 aa17.4■□□□□ 0.38
PRPF40B-209ENST00000548825 LNPKQ9C0E8 428 aa17.4■□□□□ 0.38
PRPF40B-209ENST00000548825 EMILIN1Q9Y6C2 1016 aa17.4■□□□□ 0.38
PRPF40B-209ENST00000548825 GZF1Q9H116 711 aaPredicted RBP17.39■□□□□ 0.38
PRPF40B-209ENST00000548825 BRPF3Q9ULD4 1205 aa17.39■□□□□ 0.38
PRPF40B-209ENST00000548825 A0A1W2PP64 1363 aa17.39■□□□□ 0.37
PRPF40B-209ENST00000548825 PMFBP1Q8TBY8 1022 aa17.39■□□□□ 0.37
PRPF40B-209ENST00000548825 FOXD4L1Q9NU39 408 aa17.38■□□□□ 0.37
PRPF40B-209ENST00000548825 POLR3AO14802 1390 aaPredicted RBP17.38■□□□□ 0.37
PRPF40B-209ENST00000548825 CLASP1Q7Z460 1538 aa17.38■□□□□ 0.37
PRPF40B-209ENST00000548825 TRIM27P14373 513 aa17.37■□□□□ 0.37
PRPF40B-209ENST00000548825 SYNMO15061 1565 aa17.37■□□□□ 0.37
PRPF40B-209ENST00000548825 NME9Q86XW9 330 aa17.37■□□□□ 0.37
PRPF40B-209ENST00000548825 ABCA6Q8N139 1617 aa17.37■□□□□ 0.37
PRPF40B-209ENST00000548825 YEATS2Q9ULM3 1422 aa17.37■□□□□ 0.37
PRPF40B-209ENST00000548825 KDM5AP29375 1690 aaKnown RBP17.36■□□□□ 0.37
PRPF40B-209ENST00000548825 TMEM57Q8N5G2 664 aa17.36■□□□□ 0.37
PRPF40B-209ENST00000548825 WDR63Q8IWG1 891 aa17.36■□□□□ 0.37
PRPF40B-209ENST00000548825 FAM83GA6ND36 823 aa17.35■□□□□ 0.37
PRPF40B-209ENST00000548825 MVPQ14764 893 aaKnown RBP17.35■□□□□ 0.37
PRPF40B-209ENST00000548825 TET3O43151 1660 aa17.35■□□□□ 0.37
PRPF40B-209ENST00000548825 BECN1Q14457 450 aa17.34■□□□□ 0.37
PRPF40B-209ENST00000548825 PHACTR3Q96KR7 559 aa17.34■□□□□ 0.37
PRPF40B-209ENST00000548825 NPC1L1Q9UHC9 1359 aa17.34■□□□□ 0.37
PRPF40B-209ENST00000548825 ZBTB7CA1YPR0 619 aa17.34■□□□□ 0.37
PRPF40B-209ENST00000548825 SLC52A1Q9NWF4 448 aa17.33■□□□□ 0.37
PRPF40B-209ENST00000548825 MAP3K4Q9Y6R4 1608 aa17.33■□□□□ 0.36
PRPF40B-209ENST00000548825 RPGRIP1LQ68CZ1 1315 aa17.33■□□□□ 0.36
PRPF40B-209ENST00000548825 INSRP06213 1382 aa17.33■□□□□ 0.36
PRPF40B-209ENST00000548825 CEP152O94986 1710 aa17.33■□□□□ 0.36
PRPF40B-209ENST00000548825 GSE1Q14687 1217 aa17.32■□□□□ 0.36
PRPF40B-209ENST00000548825 IQGAP1P46940 1657 aa17.32■□□□□ 0.36
PRPF40B-209ENST00000548825 TRIM35Q9UPQ4 493 aa17.32■□□□□ 0.36
PRPF40B-209ENST00000548825 ANKRD36BQ8N2N9 1353 aa17.32■□□□□ 0.36
PRPF40B-209ENST00000548825 POGZQ7Z3K3 1410 aa17.32■□□□□ 0.36
PRPF40B-209ENST00000548825 ANKRD45Q5TZF3 282 aa17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 C14orf37Q86TY3 774 aa17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 RNF17Q9BXT8 1623 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 PPRC1Q5VV67 1664 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 EFCAB6Q5THR3 1501 aa17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 ATF7IPQ6VMQ6 1270 aa17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 TSPYL6Q8N831 410 aa17.31■□□□□ 0.36
PRPF40B-209ENST00000548825 HSP90AA1P07900 732 aaKnown RBP17.3■□□□□ 0.36
PRPF40B-209ENST00000548825 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.3■□□□□ 0.36
PRPF40B-209ENST00000548825 KIF1BO60333 1816 aa17.3■□□□□ 0.36
PRPF40B-209ENST00000548825 NUTM2GQ5VZR2 741 aa17.29■□□□□ 0.36
PRPF40B-209ENST00000548825 LAMC1P11047 1609 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms