RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CADPS2Q86UW7 1296 aa12.59□□□□□ -0.39
VPS29-203ENST00000546588 CLSPNQ9HAW4 1339 aa12.59□□□□□ -0.39
VPS29-203ENST00000546588 DEPDC5O75140 1603 aa12.59□□□□□ -0.39
VPS29-203ENST00000546588 MAGI2Q86UL8 1455 aa12.58□□□□□ -0.4
VPS29-203ENST00000546588 ZNF644Q9H582 1327 aaPredicted RBP12.58□□□□□ -0.4
VPS29-203ENST00000546588 FOXK1P85037 733 aa12.57□□□□□ -0.4
VPS29-203ENST00000546588 ZMYM4Q5VZL5 1548 aa12.57□□□□□ -0.4
VPS29-203ENST00000546588 DHX57Q6P158 1386 aaKnown RBP12.56□□□□□ -0.4
VPS29-203ENST00000546588 FRMPD1Q5SYB0 1578 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 HECW2Q9P2P5 1572 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 CD109Q6YHK3 1445 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 KCNV2Q8TDN2 545 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 ADGRL1O94910 1474 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 ZNF518AQ6AHZ1 1483 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 ATP7AQ04656 1500 aa12.56□□□□□ -0.4
VPS29-203ENST00000546588 PSDA5PKW4 1024 aaPredicted RBP12.55□□□□□ -0.4
VPS29-203ENST00000546588 EFCAB2Q5VUJ9 269 aa12.55□□□□□ -0.4
VPS29-203ENST00000546588 CYB5RLQ6IPT4 315 aa12.55□□□□□ -0.4
VPS29-203ENST00000546588 DUOX2Q9NRD8 1548 aa12.55□□□□□ -0.4
VPS29-203ENST00000546588 POGZQ7Z3K3 1410 aa12.54□□□□□ -0.4
VPS29-203ENST00000546588 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
VPS29-203ENST00000546588 ANKRD30AQ9BXX3 1397 aa12.54□□□□□ -0.4
VPS29-203ENST00000546588 TEX14Q8IWB6 1497 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 MLH3Q9UHC1 1453 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 IQGAP3Q86VI3 1631 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 ARHGAP33O14559 1287 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 ERBINQ96RT1 1412 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 TRAPPC8Q9Y2L5 1435 aa12.53□□□□□ -0.4
VPS29-203ENST00000546588 RNF17Q9BXT8 1623 aaKnown RBP12.52□□□□□ -0.4
VPS29-203ENST00000546588 DENND4BO75064 1496 aaPredicted RBP12.52□□□□□ -0.41
VPS29-203ENST00000546588 REREQ9P2R6 1566 aa12.52□□□□□ -0.41
VPS29-203ENST00000546588 ADGRD1Q6QNK2 874 aa12.51□□□□□ -0.41
VPS29-203ENST00000546588 PLPP6Q8IY26 295 aa12.51□□□□□ -0.41
VPS29-203ENST00000546588 KCNH8Q96L42 1107 aa12.51□□□□□ -0.41
VPS29-203ENST00000546588 TSPOAP1O95153 1857 aa12.51□□□□□ -0.41
VPS29-203ENST00000546588 VWDEQ8N2E2 1590 aa12.5□□□□□ -0.41
VPS29-203ENST00000546588 ABCA6Q8N139 1617 aa12.5□□□□□ -0.41
VPS29-203ENST00000546588 PRDM15P57071 1507 aaPredicted RBP12.49□□□□□ -0.41
VPS29-203ENST00000546588 ANKRD50Q9ULJ7 1429 aa12.49□□□□□ -0.41
VPS29-203ENST00000546588 TULP1O00294 542 aaPredicted RBP12.49□□□□□ -0.41
VPS29-203ENST00000546588 GTF3C3Q9Y5Q9 886 aa12.49□□□□□ -0.41
VPS29-203ENST00000546588 SCAPERQ9BY12 1400 aa12.48□□□□□ -0.41
VPS29-203ENST00000546588 DSG2Q14126 1118 aa12.48□□□□□ -0.41
VPS29-203ENST00000546588 LMOD2Q6P5Q4 547 aa12.48□□□□□ -0.41
VPS29-203ENST00000546588 MROH1Q8NDA8 1641 aa12.48□□□□□ -0.41
VPS29-203ENST00000546588 DIP2CQ9Y2E4 1556 aa12.47□□□□□ -0.41
VPS29-203ENST00000546588 KIF15Q9NS87 1388 aa12.47□□□□□ -0.41
VPS29-203ENST00000546588 TK2O00142 265 aa12.47□□□□□ -0.41
VPS29-203ENST00000546588 HRO43593 1189 aa12.47□□□□□ -0.41
VPS29-203ENST00000546588 ZEB1P37275 1124 aaPredicted RBP12.47□□□□□ -0.41
VPS29-203ENST00000546588 PZPP20742 1482 aa12.46□□□□□ -0.41
VPS29-203ENST00000546588 TSPY4P0CV99 314 aa12.45□□□□□ -0.42
VPS29-203ENST00000546588 TSPY10P0CW01 314 aa12.45□□□□□ -0.42
VPS29-203ENST00000546588 ITGAEP38570 1179 aa12.45□□□□□ -0.42
VPS29-203ENST00000546588 HNRNPMP52272 730 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS29-203ENST00000546588 DMRTA1Q5VZB9 504 aa12.45□□□□□ -0.42
VPS29-203ENST00000546588 ZNF777Q9ULD5 760 aaPredicted RBP12.45□□□□□ -0.42
VPS29-203ENST00000546588 TIMELESSQ9UNS1 1208 aa12.45□□□□□ -0.42
VPS29-203ENST00000546588 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS29-203ENST00000546588 TET3O43151 1660 aa12.44□□□□□ -0.42
VPS29-203ENST00000546588 ZC3H13Q5T200 1668 aaKnown RBP12.44□□□□□ -0.42
VPS29-203ENST00000546588 FAM135AQ9P2D6 1515 aa12.43□□□□□ -0.42
VPS29-203ENST00000546588 PSEN2P49810 448 aa12.43□□□□□ -0.42
VPS29-203ENST00000546588 HCSTQ9UBK5 93 aa12.43□□□□□ -0.42
VPS29-203ENST00000546588 LMTK2Q8IWU2 1503 aa12.42□□□□□ -0.42
VPS29-203ENST00000546588 ARHGEF40Q8TER5 1519 aa12.42□□□□□ -0.42
VPS29-203ENST00000546588 PPP4R3BQ5MIZ7 849 aa12.4□□□□□ -0.42
VPS29-203ENST00000546588 RRP7BPQ9NSQ0 103 aa12.4□□□□□ -0.42
VPS29-203ENST00000546588 CHIC2Q9UKJ5 165 aa12.4□□□□□ -0.42
VPS29-203ENST00000546588 E9PCH4 1651 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 AGLP35573 1532 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 TBC1D12O60347 775 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 TMEM132AQ24JP5 1023 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 OXER1Q8TDS5 423 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 ATP10AO60312 1499 aa12.39□□□□□ -0.43
VPS29-203ENST00000546588 SPAG9O60271 1321 aaKnown RBP12.38□□□□□ -0.43
VPS29-203ENST00000546588 CCER1Q8TC90 406 aaPredicted RBP12.38□□□□□ -0.43
VPS29-203ENST00000546588 PLA2G2EQ9NZK7 142 aa12.38□□□□□ -0.43
VPS29-203ENST00000546588 DHX29Q7Z478 1369 aaKnown RBP12.38□□□□□ -0.43
VPS29-203ENST00000546588 A2MP01023 1474 aa12.38□□□□□ -0.43
VPS29-203ENST00000546588 NEURL4Q96JN8 1562 aa12.38□□□□□ -0.43
VPS29-203ENST00000546588 SPHKAPQ2M3C7 1700 aa12.37□□□□□ -0.43
VPS29-203ENST00000546588 CRISPLD2Q9H0B8 497 aa12.37□□□□□ -0.43
VPS29-203ENST00000546588 SIGLEC1Q9BZZ2 1709 aa12.37□□□□□ -0.43
VPS29-203ENST00000546588 FAM69CQ0P6D2 419 aa12.36□□□□□ -0.43
VPS29-203ENST00000546588 E2F4Q16254 413 aa12.36□□□□□ -0.43
VPS29-203ENST00000546588 CEP152O94986 1710 aa12.36□□□□□ -0.43
VPS29-203ENST00000546588 AFAP1Q8N556 730 aa12.35□□□□□ -0.43
VPS29-203ENST00000546588 EFCAB6Q5THR3 1501 aa12.35□□□□□ -0.43
VPS29-203ENST00000546588 ARHGEF1Q92888 912 aaKnown RBP12.34□□□□□ -0.43
VPS29-203ENST00000546588 RPRD2Q5VT52 1461 aaKnown RBP12.34□□□□□ -0.43
VPS29-203ENST00000546588 COL17A1Q9UMD9 1497 aaPredicted RBP12.34□□□□□ -0.43
VPS29-203ENST00000546588 ANKRD30BQ9BXX2 1392 aa12.33□□□□□ -0.44
VPS29-203ENST00000546588 CAMSAP1Q5T5Y3 1602 aa12.33□□□□□ -0.44
VPS29-203ENST00000546588 TRPM2O94759 1503 aa12.32□□□□□ -0.44
VPS29-203ENST00000546588 MPHOSPH9Q99550 1183 aa12.31□□□□□ -0.44
VPS29-203ENST00000546588 YEATS2Q9ULM3 1422 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 ABCC3O15438 1527 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 SEMA3EO15041 775 aa12.29□□□□□ -0.44
VPS29-203ENST00000546588 KCNK17Q96T54 332 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms