RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 SLC12A5Q9H2X9 1139 aa18.69■□□□□ 0.58
HOXC11-202ENST00000546378 PDZRN3Q9UPQ7 1066 aa18.69■□□□□ 0.58
HOXC11-202ENST00000546378 PRDM15P57071 1507 aaPredicted RBP18.68■□□□□ 0.58
HOXC11-202ENST00000546378 DIP2BQ9P265 1576 aa18.68■□□□□ 0.58
HOXC11-202ENST00000546378 MAGI2Q86UL8 1455 aa18.68■□□□□ 0.58
HOXC11-202ENST00000546378 UHRF1BP1Q6BDS2 1440 aa18.68■□□□□ 0.58
HOXC11-202ENST00000546378 PCDHB15Q9Y5E8 787 aa18.68■□□□□ 0.58
HOXC11-202ENST00000546378 RALGAPBQ86X10 1494 aa18.67■□□□□ 0.58
HOXC11-202ENST00000546378 FOXD4L5Q5VV16 416 aaPredicted RBP18.67■□□□□ 0.58
HOXC11-202ENST00000546378 FOXD4L4Q8WXT5 416 aaPredicted RBP18.67■□□□□ 0.58
HOXC11-202ENST00000546378 RRAGDQ9NQL2 400 aaPredicted RBP18.67■□□□□ 0.58
HOXC11-202ENST00000546378 PARD3Q8TEW0 1356 aa18.67■□□□□ 0.58
HOXC11-202ENST00000546378 CFAP74Q9C0B2 1584 aa18.66■□□□□ 0.58
HOXC11-202ENST00000546378 E9PCH4 1651 aa18.66■□□□□ 0.58
HOXC11-202ENST00000546378 NOS1P29475 1434 aa18.66■□□□□ 0.58
HOXC11-202ENST00000546378 KDM2BQ8NHM5 1336 aa18.65■□□□□ 0.58
HOXC11-202ENST00000546378 FBLN1P23142 703 aa18.65■□□□□ 0.58
HOXC11-202ENST00000546378 ABCA6Q8N139 1617 aa18.65■□□□□ 0.58
HOXC11-202ENST00000546378 C1orf115Q9H7X2 142 aa18.65■□□□□ 0.58
HOXC11-202ENST00000546378 TCP11L2Q8N4U5 519 aa18.64■□□□□ 0.58
HOXC11-202ENST00000546378 KDM5CP41229 1560 aa18.64■□□□□ 0.57
HOXC11-202ENST00000546378 PTPRTO14522 1441 aa18.64■□□□□ 0.57
HOXC11-202ENST00000546378 FRMPD1Q5SYB0 1578 aa18.64■□□□□ 0.57
HOXC11-202ENST00000546378 VSIG10Q8N0Z9 540 aa18.63■□□□□ 0.57
HOXC11-202ENST00000546378 LNPKQ9C0E8 428 aa18.63■□□□□ 0.57
HOXC11-202ENST00000546378 SMC4Q9NTJ3 1288 aa18.63■□□□□ 0.57
HOXC11-202ENST00000546378 TBC1D2Q9BYX2 928 aa18.62■□□□□ 0.57
HOXC11-202ENST00000546378 GOLGA6L3A6NEY3 463 aa18.62■□□□□ 0.57
HOXC11-202ENST00000546378 VGFO15240 615 aaPredicted RBP18.62■□□□□ 0.57
HOXC11-202ENST00000546378 FOXD4L6Q3SYB3 417 aaPredicted RBP18.62■□□□□ 0.57
HOXC11-202ENST00000546378 FOXD4L3Q6VB84 417 aaPredicted RBP18.62■□□□□ 0.57
HOXC11-202ENST00000546378 SLC24A1O60721 1099 aa18.61■□□□□ 0.57
HOXC11-202ENST00000546378 AMER1Q5JTC6 1135 aaPredicted RBP18.61■□□□□ 0.57
HOXC11-202ENST00000546378 PNNQ9H307 717 aaKnown RBP18.61■□□□□ 0.57
HOXC11-202ENST00000546378 MAP3K4Q9Y6R4 1608 aa18.61■□□□□ 0.57
HOXC11-202ENST00000546378 MTHFSP49914 203 aa18.6■□□□□ 0.57
HOXC11-202ENST00000546378 DIP2CQ9Y2E4 1556 aa18.6■□□□□ 0.57
HOXC11-202ENST00000546378 SLC52A1Q9NWF4 448 aa18.6■□□□□ 0.57
HOXC11-202ENST00000546378 CLTCL1P53675 1640 aa18.6■□□□□ 0.57
HOXC11-202ENST00000546378 E9PSI1 815 aa18.59■□□□□ 0.57
HOXC11-202ENST00000546378 WWC1Q8IX03 1113 aa18.59■□□□□ 0.57
HOXC11-202ENST00000546378 TRPM2O94759 1503 aa18.58■□□□□ 0.57
HOXC11-202ENST00000546378 MROH1Q8NDA8 1641 aa18.58■□□□□ 0.56
HOXC11-202ENST00000546378 SOX12O15370 315 aa18.58■□□□□ 0.56
HOXC11-202ENST00000546378 HSP90AB1P08238 724 aaKnown RBP18.58■□□□□ 0.56
HOXC11-202ENST00000546378 MPNDQ8N594 471 aa18.58■□□□□ 0.56
HOXC11-202ENST00000546378 CEP152O94986 1710 aa18.58■□□□□ 0.56
HOXC11-202ENST00000546378 PLEKHG5O94827 1062 aa18.57■□□□□ 0.56
HOXC11-202ENST00000546378 ABCC3O15438 1527 aa18.57■□□□□ 0.56
HOXC11-202ENST00000546378 GLI2P10070 1586 aa18.57■□□□□ 0.56
HOXC11-202ENST00000546378 TET3O43151 1660 aa18.57■□□□□ 0.56
HOXC11-202ENST00000546378 EFCAB6Q5THR3 1501 aa18.57■□□□□ 0.56
HOXC11-202ENST00000546378 TRIM44Q96DX7 344 aaPredicted RBP18.56■□□□□ 0.56
HOXC11-202ENST00000546378 PPRC1Q5VV67 1664 aaKnown RBP18.56■□□□□ 0.56
HOXC11-202ENST00000546378 CARD14Q9BXL6 1004 aa18.56■□□□□ 0.56
HOXC11-202ENST00000546378 NOL8Q76FK4 1167 aaKnown RBP18.55■□□□□ 0.56
HOXC11-202ENST00000546378 GGNBP2Q9H3C7 697 aa18.55■□□□□ 0.56
HOXC11-202ENST00000546378 XRCC6P12956 609 aaKnown RBP eCLIP18.54■□□□□ 0.56
HOXC11-202ENST00000546378 C22orf23Q9BZE7 217 aa18.54■□□□□ 0.56
HOXC11-202ENST00000546378 STAC3Q96MF2 364 aa18.54■□□□□ 0.56
HOXC11-202ENST00000546378 HSCBQ8IWL3 235 aa18.53■□□□□ 0.56
HOXC11-202ENST00000546378 THUMPD2Q9BTF0 503 aaKnown RBP18.53■□□□□ 0.56
HOXC11-202ENST00000546378 TRAK2O60296 914 aa18.52■□□□□ 0.56
HOXC11-202ENST00000546378 CDCA8Q53HL2 280 aa18.52■□□□□ 0.56
HOXC11-202ENST00000546378 CABP2Q9NPB3 220 aa18.52■□□□□ 0.56
HOXC11-202ENST00000546378 EXOSC9Q06265 439 aaKnown RBP18.52■□□□□ 0.56
HOXC11-202ENST00000546378 MINK1Q8N4C8 1332 aaPredicted RBP18.52■□□□□ 0.55
HOXC11-202ENST00000546378 C14orf93Q9H972 538 aaKnown RBP18.52■□□□□ 0.55
HOXC11-202ENST00000546378 RICTORQ6R327 1708 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 DEPDC5O75140 1603 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 VWDEQ8N2E2 1590 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 RBM42Q9BTD8 480 aaKnown RBP18.51■□□□□ 0.55
HOXC11-202ENST00000546378 RWDD1Q9H446 243 aaPredicted RBP18.51■□□□□ 0.55
HOXC11-202ENST00000546378 SPHKAPQ2M3C7 1700 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 SRPK2P78362 688 aaKnown RBP18.51■□□□□ 0.55
HOXC11-202ENST00000546378 USP19O94966 1318 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 CGNL1Q0VF96 1302 aa18.51■□□□□ 0.55
HOXC11-202ENST00000546378 RARSP54136 660 aaKnown RBP18.5■□□□□ 0.55
HOXC11-202ENST00000546378 ZMYM3Q14202 1370 aa18.5■□□□□ 0.55
HOXC11-202ENST00000546378 EIF2AK4Q9P2K8 1649 aaKnown RBP18.5■□□□□ 0.55
HOXC11-202ENST00000546378 GPRASP1Q5JY77 1395 aa18.5■□□□□ 0.55
HOXC11-202ENST00000546378 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.55
HOXC11-202ENST00000546378 RNF17Q9BXT8 1623 aaKnown RBP18.5■□□□□ 0.55
HOXC11-202ENST00000546378 ANKRD45Q5TZF3 282 aa18.49■□□□□ 0.55
HOXC11-202ENST00000546378 EIF3AQ14152 1382 aaKnown RBP18.49■□□□□ 0.55
HOXC11-202ENST00000546378 MYH16Q9H6N6 1097 aa18.48■□□□□ 0.55
HOXC11-202ENST00000546378 RPGRIP1LQ68CZ1 1315 aa18.47■□□□□ 0.55
HOXC11-202ENST00000546378 MCM4P33991 863 aa18.47■□□□□ 0.55
HOXC11-202ENST00000546378 HMOX1P09601 288 aa18.47■□□□□ 0.55
HOXC11-202ENST00000546378 L1TD1Q5T7N2 865 aaKnown RBP18.47■□□□□ 0.55
HOXC11-202ENST00000546378 FAM43AQ8N2R8 423 aa18.47■□□□□ 0.55
HOXC11-202ENST00000546378 SCAF11Q99590 1463 aaKnown RBP18.47■□□□□ 0.55
HOXC11-202ENST00000546378 DNAJC5Q9H3Z4 198 aa18.47■□□□□ 0.55
HOXC11-202ENST00000546378 PMFBP1Q8TBY8 1022 aa18.46■□□□□ 0.55
HOXC11-202ENST00000546378 CHAMP1Q96JM3 812 aa18.46■□□□□ 0.55
HOXC11-202ENST00000546378 RSPH6AQ9H0K4 717 aa18.46■□□□□ 0.55
HOXC11-202ENST00000546378 MAPK8IP3Q9UPT6 1336 aa18.46■□□□□ 0.55
HOXC11-202ENST00000546378 RBM10P98175 930 aaKnown RBP18.46■□□□□ 0.55
HOXC11-202ENST00000546378 DZIP1LQ8IYY4 767 aaKnown RBP18.46■□□□□ 0.55
HOXC11-202ENST00000546378 PRAM1Q96QH2 718 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms