RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 WAPLQ7Z5K2 1190 aa17.21■□□□□ 0.35
YBX3-217ENST00000546164 AHDC1Q5TGY3 1603 aaPredicted RBP17.21■□□□□ 0.35
YBX3-217ENST00000546164 C1orf167Q5SNV9 1468 aa17.19■□□□□ 0.34
YBX3-217ENST00000546164 SIN3AQ96ST3 1273 aa17.19■□□□□ 0.34
YBX3-217ENST00000546164 L3MBTL2Q969R5 705 aa17.17■□□□□ 0.34
YBX3-217ENST00000546164 COL16A1Q07092 1604 aaPredicted RBP17.17■□□□□ 0.34
YBX3-217ENST00000546164 PRAM1Q96QH2 718 aa17.16■□□□□ 0.34
YBX3-217ENST00000546164 PHLPP1O60346 1717 aa17.16■□□□□ 0.34
YBX3-217ENST00000546164 KIAA1210Q9ULL0 1709 aa17.16■□□□□ 0.34
YBX3-217ENST00000546164 DISP3Q9P2K9 1392 aa17.15■□□□□ 0.34
YBX3-217ENST00000546164 MED1Q15648 1581 aaPredicted RBP17.15■□□□□ 0.34
YBX3-217ENST00000546164 JCADQ9P266 1359 aa17.15■□□□□ 0.34
YBX3-217ENST00000546164 MAPK8IP2Q13387 824 aaPredicted RBP17.14■□□□□ 0.33
YBX3-217ENST00000546164 NEUROD1Q13562 356 aa17.13■□□□□ 0.33
YBX3-217ENST00000546164 TRAK1Q9UPV9 953 aa17.13■□□□□ 0.33
YBX3-217ENST00000546164 NHSL1Q5SYE7 1610 aa17.13■□□□□ 0.33
YBX3-217ENST00000546164 ORAI2Q96SN7 254 aa17.12■□□□□ 0.33
YBX3-217ENST00000546164 POGKQ9P215 609 aa17.12■□□□□ 0.33
YBX3-217ENST00000546164 ADGRB2O60241 1585 aa17.11■□□□□ 0.33
YBX3-217ENST00000546164 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
YBX3-217ENST00000546164 SAFB2Q14151 953 aaKnown RBP eCLIP17.09■□□□□ 0.33
YBX3-217ENST00000546164 NBPF1Q3BBV0 1214 aa17.09■□□□□ 0.33
YBX3-217ENST00000546164 SOS2Q07890 1332 aaPredicted RBP17.09■□□□□ 0.33
YBX3-217ENST00000546164 SPATA31A6Q5VVP1 1343 aa17.08■□□□□ 0.32
YBX3-217ENST00000546164 ESCO1Q5FWF5 840 aa17.08■□□□□ 0.32
YBX3-217ENST00000546164 LRRC59Q96AG4 307 aaKnown RBP17.08■□□□□ 0.32
YBX3-217ENST00000546164 ANKARQ7Z5J8 1434 aa17.07■□□□□ 0.32
YBX3-217ENST00000546164 ARHGEF28Q8N1W1 1705 aaKnown RBP17.07■□□□□ 0.32
YBX3-217ENST00000546164 NPHP3Q7Z494 1330 aa17.06■□□□□ 0.32
YBX3-217ENST00000546164 DDX17Q92841 729 aaKnown RBP17.06■□□□□ 0.32
YBX3-217ENST00000546164 SHPRHQ149N8 1683 aa17.06■□□□□ 0.32
YBX3-217ENST00000546164 EIF3AQ14152 1382 aaKnown RBP17.05■□□□□ 0.32
YBX3-217ENST00000546164 NUTM2FA1L443 756 aa17.05■□□□□ 0.32
YBX3-217ENST00000546164 PCGF6Q9BYE7 350 aa17.05■□□□□ 0.32
YBX3-217ENST00000546164 TONSLQ96HA7 1378 aa17.04■□□□□ 0.32
YBX3-217ENST00000546164 TRPM1Q7Z4N2 1603 aa17.03■□□□□ 0.32
YBX3-217ENST00000546164 MINK1Q8N4C8 1332 aaPredicted RBP17.03■□□□□ 0.32
YBX3-217ENST00000546164 WASLO00401 505 aaPredicted RBP17.03■□□□□ 0.32
YBX3-217ENST00000546164 PNPLA6Q8IY17 1366 aa17.02■□□□□ 0.32
YBX3-217ENST00000546164 KIF1AQ12756 1690 aa17.02■□□□□ 0.32
YBX3-217ENST00000546164 PXDNQ92626 1479 aa17.02■□□□□ 0.32
YBX3-217ENST00000546164 FOXO3O43524 673 aa17.02■□□□□ 0.32
YBX3-217ENST00000546164 HIRIP3Q9BW71 556 aaPredicted RBP17.02■□□□□ 0.32
YBX3-217ENST00000546164 GPRASP1Q5JY77 1395 aa17.02■□□□□ 0.31
YBX3-217ENST00000546164 CLSPNQ9HAW4 1339 aa17.01■□□□□ 0.31
YBX3-217ENST00000546164 NBPF8Q3BBV2 869 aa17.01■□□□□ 0.31
YBX3-217ENST00000546164 PHF8Q9UPP1 1060 aa17.01■□□□□ 0.31
YBX3-217ENST00000546164 TULP4Q9NRJ4 1543 aa17.01■□□□□ 0.31
YBX3-217ENST00000546164 LRP6O75581 1613 aa17■□□□□ 0.31
YBX3-217ENST00000546164 ROCK2O75116 1388 aaKnown RBP17■□□□□ 0.31
YBX3-217ENST00000546164 USP32Q8NFA0 1604 aa16.99■□□□□ 0.31
YBX3-217ENST00000546164 PRR36Q9H6K5 1346 aa16.99■□□□□ 0.31
YBX3-217ENST00000546164 CENPJQ9HC77 1338 aaPredicted RBP16.99■□□□□ 0.31
YBX3-217ENST00000546164 ILDR2Q71H61 639 aa16.99■□□□□ 0.31
YBX3-217ENST00000546164 RGS17Q9UGC6 210 aaPredicted RBP16.98■□□□□ 0.31
YBX3-217ENST00000546164 RALGAPBQ86X10 1494 aa16.97■□□□□ 0.31
YBX3-217ENST00000546164 ATP7BP35670 1465 aa16.96■□□□□ 0.31
YBX3-217ENST00000546164 RGPD8O14715 1765 aaPredicted RBP16.95■□□□□ 0.3
YBX3-217ENST00000546164 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
YBX3-217ENST00000546164 KRT28Q7Z3Y7 464 aa16.95■□□□□ 0.3
YBX3-217ENST00000546164 CDK19Q9BWU1 502 aa16.95■□□□□ 0.3
YBX3-217ENST00000546164 SPATA31A3Q5VYP0 1347 aa16.95■□□□□ 0.3
YBX3-217ENST00000546164 NUDT16Q96DE0 195 aaKnown RBP16.94■□□□□ 0.3
YBX3-217ENST00000546164 TIMELESSQ9UNS1 1208 aa16.94■□□□□ 0.3
YBX3-217ENST00000546164 COL22A1Q8NFW1 1626 aaPredicted RBP16.94■□□□□ 0.3
YBX3-217ENST00000546164 SBNO1A3KN83 1393 aa16.93■□□□□ 0.3
YBX3-217ENST00000546164 PSME1Q06323 249 aa16.93■□□□□ 0.3
YBX3-217ENST00000546164 PMFBP1Q8TBY8 1022 aa16.93■□□□□ 0.3
YBX3-217ENST00000546164 NUTM2BA6NNL0 878 aaPredicted RBP16.92■□□□□ 0.3
YBX3-217ENST00000546164 NUTM2EB1AL46 878 aaPredicted RBP16.92■□□□□ 0.3
YBX3-217ENST00000546164 MEX3CQ5U5Q3 659 aaKnown RBP16.92■□□□□ 0.3
YBX3-217ENST00000546164 NUTM2AQ8IVF1 878 aaPredicted RBP16.92■□□□□ 0.3
YBX3-217ENST00000546164 TNS3Q68CZ2 1445 aa16.91■□□□□ 0.3
YBX3-217ENST00000546164 CARD11Q9BXL7 1154 aa16.91■□□□□ 0.3
YBX3-217ENST00000546164 CCDC61Q9Y6R9 512 aa16.91■□□□□ 0.3
YBX3-217ENST00000546164 QRICH2Q9H0J4 1663 aa16.91■□□□□ 0.3
YBX3-217ENST00000546164 SBNO2Q9Y2G9 1366 aa16.9■□□□□ 0.3
YBX3-217ENST00000546164 ITSN1Q15811 1721 aa16.89■□□□□ 0.29
YBX3-217ENST00000546164 POLR3AO14802 1390 aaPredicted RBP16.89■□□□□ 0.29
YBX3-217ENST00000546164 TOPAZ1Q8N9V7 1692 aa16.88■□□□□ 0.29
YBX3-217ENST00000546164 PLEKHG3A1L390 1219 aa16.88■□□□□ 0.29
YBX3-217ENST00000546164 ZNF772Q68DY9 489 aaPredicted RBP16.88■□□□□ 0.29
YBX3-217ENST00000546164 POTEAQ6S8J7 498 aa16.88■□□□□ 0.29
YBX3-217ENST00000546164 NGDNQ8NEJ9 315 aaKnown RBP16.88■□□□□ 0.29
YBX3-217ENST00000546164 ARHGEF10O15013 1369 aa16.88■□□□□ 0.29
YBX3-217ENST00000546164 SRPK2P78362 688 aaKnown RBP16.87■□□□□ 0.29
YBX3-217ENST00000546164 EVC2Q86UK5 1308 aa16.87■□□□□ 0.29
YBX3-217ENST00000546164 CABP2Q9NPB3 220 aa16.86■□□□□ 0.29
YBX3-217ENST00000546164 TRPM3Q9HCF6 1732 aaPredicted RBP16.85■□□□□ 0.29
YBX3-217ENST00000546164 ADAMTS2O95450 1211 aa16.85■□□□□ 0.29
YBX3-217ENST00000546164 SOCS7O14512 581 aa16.84■□□□□ 0.29
YBX3-217ENST00000546164 CCER1Q8TC90 406 aaPredicted RBP16.84■□□□□ 0.29
YBX3-217ENST00000546164 C8orf37Q96NL8 207 aa16.84■□□□□ 0.29
YBX3-217ENST00000546164 ACEP12821 1306 aa16.84■□□□□ 0.29
YBX3-217ENST00000546164 AFF2P51816 1311 aa16.84■□□□□ 0.29
YBX3-217ENST00000546164 PPIP5K1Q6PFW1 1433 aa16.83■□□□□ 0.28
YBX3-217ENST00000546164 FNBP4Q8N3X1 1017 aaPredicted RBP16.83■□□□□ 0.28
YBX3-217ENST00000546164 NGLY1Q96IV0 654 aa16.82■□□□□ 0.28
YBX3-217ENST00000546164 ALS2Q96Q42 1657 aa16.81■□□□□ 0.28
YBX3-217ENST00000546164 BRD4O60885 1362 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms