RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TONSLQ96HA7 1378 aa8.88□□□□□ -0.99
SYNE1-239ENST00000545694 ABCC1P33527 1531 aa8.88□□□□□ -0.99
SYNE1-239ENST00000545694 SYCP2Q9BX26 1530 aa8.88□□□□□ -0.99
SYNE1-239ENST00000545694 KDM6BO15054 1643 aa8.87□□□□□ -0.99
SYNE1-239ENST00000545694 KIF15Q9NS87 1388 aa8.87□□□□□ -0.99
SYNE1-239ENST00000545694 VPS9D1Q9Y2B5 631 aa8.87□□□□□ -0.99
SYNE1-239ENST00000545694 ASXL2Q76L83 1435 aa8.87□□□□□ -0.99
SYNE1-239ENST00000545694 DUOX2Q9NRD8 1548 aa8.86□□□□□ -0.99
SYNE1-239ENST00000545694 EVI5O60447 810 aa8.86□□□□□ -0.99
SYNE1-239ENST00000545694 PPP1R15AO75807 674 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-239ENST00000545694 FOSBP53539 338 aa8.86□□□□□ -0.99
SYNE1-239ENST00000545694 DDX27Q96GQ7 796 aaKnown RBP8.86□□□□□ -0.99
SYNE1-239ENST00000545694 ERBINQ96RT1 1412 aa8.86□□□□□ -0.99
SYNE1-239ENST00000545694 HNRNPMP52272 730 aaKnown RBP eCLIP8.85□□□□□ -0.99
SYNE1-239ENST00000545694 DIEXFQ68CQ4 756 aaKnown RBP8.85□□□□□ -0.99
SYNE1-239ENST00000545694 BCL2L12Q9HB09 334 aa8.85□□□□□ -0.99
SYNE1-239ENST00000545694 ANO8Q9HCE9 1232 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-239ENST00000545694 ANKRD30BQ9BXX2 1392 aa8.85□□□□□ -0.99
SYNE1-239ENST00000545694 PZPP20742 1482 aa8.84□□□□□ -0.99
SYNE1-239ENST00000545694 UNC13BO14795 1591 aa8.84□□□□□ -0.99
SYNE1-239ENST00000545694 MAP3K9P80192 1104 aa8.84□□□□□ -0.99
SYNE1-239ENST00000545694 FANCAO15360 1455 aa8.83□□□□□ -1
SYNE1-239ENST00000545694 DENND4BO75064 1496 aaPredicted RBP8.83□□□□□ -1
SYNE1-239ENST00000545694 RPRD2Q5VT52 1461 aaKnown RBP8.83□□□□□ -1
SYNE1-239ENST00000545694 NEUROD1Q13562 356 aa8.83□□□□□ -1
SYNE1-239ENST00000545694 SIN3AQ96ST3 1273 aa8.83□□□□□ -1
SYNE1-239ENST00000545694 PTPREP23469 700 aa8.82□□□□□ -1
SYNE1-239ENST00000545694 PTPN5P54829 565 aa8.82□□□□□ -1
SYNE1-239ENST00000545694 CADPS2Q86UW7 1296 aa8.82□□□□□ -1
SYNE1-239ENST00000545694 ADAM33Q9BZ11 813 aa8.82□□□□□ -1
SYNE1-239ENST00000545694 MAGI2Q86UL8 1455 aa8.82□□□□□ -1
SYNE1-239ENST00000545694 ARHGEF12Q9NZN5 1544 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 IQGAP3Q86VI3 1631 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 EIF2AK4Q9P2K8 1649 aaKnown RBP8.81□□□□□ -1
SYNE1-239ENST00000545694 EMILIN3Q9NT22 766 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 NUP155O75694 1391 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 NEO1Q92859 1461 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 GLI2P10070 1586 aa8.81□□□□□ -1
SYNE1-239ENST00000545694 MFSD10Q14728 455 aa8.8□□□□□ -1
SYNE1-239ENST00000545694 ZDHHC16Q969W1 377 aa8.8□□□□□ -1
SYNE1-239ENST00000545694 ADGRL1O94910 1474 aa8.8□□□□□ -1
SYNE1-239ENST00000545694 INO80Q9ULG1 1556 aaPredicted RBP8.8□□□□□ -1
SYNE1-239ENST00000545694 ZFYVE16Q7Z3T8 1539 aa8.8□□□□□ -1
SYNE1-239ENST00000545694 SPAG9O60271 1321 aaKnown RBP8.8□□□□□ -1
SYNE1-239ENST00000545694 ZNF518AQ6AHZ1 1483 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 ZBED2Q9BTP6 218 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 SLC4A5Q9BY07 1137 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 RIMBP3CA6NJZ7 1639 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 RIMBP3BA6NNM3 1639 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 RIMBP3Q9UFD9 1639 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 ATP7AQ04656 1500 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 FAM135AQ9P2D6 1515 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 CD109Q6YHK3 1445 aa8.79□□□□□ -1
SYNE1-239ENST00000545694 ATP10AO60312 1499 aa8.78□□□□□ -1
SYNE1-239ENST00000545694 DEPDC5O75140 1603 aa8.78□□□□□ -1
SYNE1-239ENST00000545694 TRAPPC8Q9Y2L5 1435 aa8.78□□□□□ -1
SYNE1-239ENST00000545694 BHMG1C9JSJ3 638 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-239ENST00000545694 SCAPERQ9BY12 1400 aa8.77□□□□□ -1.01
SYNE1-239ENST00000545694 KDM5CP41229 1560 aa8.77□□□□□ -1.01
SYNE1-239ENST00000545694 TEX14Q8IWB6 1497 aa8.77□□□□□ -1.01
SYNE1-239ENST00000545694 GOLGA8CPA6NN73 597 aa8.76□□□□□ -1.01
SYNE1-239ENST00000545694 MLH3Q9UHC1 1453 aa8.76□□□□□ -1.01
SYNE1-239ENST00000545694 MAP3K4Q9Y6R4 1608 aa8.76□□□□□ -1.01
SYNE1-239ENST00000545694 BCORL1Q5H9F3 1711 aa8.75□□□□□ -1.01
SYNE1-239ENST00000545694 MRPL50Q8N5N7 158 aaKnown RBP8.75□□□□□ -1.01
SYNE1-239ENST00000545694 PCDHGA10Q9Y5H3 936 aa8.75□□□□□ -1.01
SYNE1-239ENST00000545694 KANK1Q14678 1352 aa8.74□□□□□ -1.01
SYNE1-239ENST00000545694 DHX29Q7Z478 1369 aaKnown RBP8.74□□□□□ -1.01
SYNE1-239ENST00000545694 KIDINS220Q9ULH0 1771 aa8.74□□□□□ -1.01
SYNE1-239ENST00000545694 POGZQ7Z3K3 1410 aa8.74□□□□□ -1.01
SYNE1-239ENST00000545694 WNT2BQ93097 391 aa8.74□□□□□ -1.01
SYNE1-239ENST00000545694 HECW2Q9P2P5 1572 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 UHRF1BP1Q6BDS2 1440 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 TET3O43151 1660 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 THSD4Q6ZMP0 1018 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 L3MBTL2Q969R5 705 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 VWDEQ8N2E2 1590 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 NEURL4Q96JN8 1562 aa8.73□□□□□ -1.01
SYNE1-239ENST00000545694 PRDM15P57071 1507 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-239ENST00000545694 COL9A1P20849 921 aa8.72□□□□□ -1.01
SYNE1-239ENST00000545694 AFAP1Q8N556 730 aa8.72□□□□□ -1.01
SYNE1-239ENST00000545694 RNF17Q9BXT8 1623 aaKnown RBP8.72□□□□□ -1.01
SYNE1-239ENST00000545694 CCDC144AA2RUR9 1427 aa8.71□□□□□ -1.01
SYNE1-239ENST00000545694 POLR1AO95602 1720 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-239ENST00000545694 EIF4G2P78344 907 aaKnown RBP eCLIP8.71□□□□□ -1.02
SYNE1-239ENST00000545694 PROX2Q3B8N5 592 aa8.71□□□□□ -1.02
SYNE1-239ENST00000545694 LMTK2Q8IWU2 1503 aa8.7□□□□□ -1.02
SYNE1-239ENST00000545694 CYB5RLQ6IPT4 315 aa8.7□□□□□ -1.02
SYNE1-239ENST00000545694 A2MP01023 1474 aa8.7□□□□□ -1.02
SYNE1-239ENST00000545694 DIP2BQ9P265 1576 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 SPHKAPQ2M3C7 1700 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 RICTORQ6R327 1708 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 PPP1R3GB7ZBB8 358 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 DPYSL4O14531 572 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 TYW1BQ6NUM6 668 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 NBPF3Q9H094 633 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 PTPRTO14522 1441 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 TRPM2O94759 1503 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 E9PCH4 1651 aa8.69□□□□□ -1.02
SYNE1-239ENST00000545694 PHF14O94880 888 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms