RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 FAM135BQ49AJ0 1406 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 PLEKHH1Q9ULM0 1364 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 MINK1Q8N4C8 1332 aaPredicted RBP8.92□□□□□ -0.98
LTBR-212ENST00000543542 PIP4K2BP78356 416 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 CADPS2Q86UW7 1296 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 SIRT1Q96EB6 747 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 C19orf44Q9H6X5 657 aa8.92□□□□□ -0.98
LTBR-212ENST00000543542 ADGRL3Q9HAR2 1447 aa8.91□□□□□ -0.98
LTBR-212ENST00000543542 CENPJQ9HC77 1338 aaPredicted RBP8.91□□□□□ -0.98
LTBR-212ENST00000543542 HIRIP3Q9BW71 556 aaPredicted RBP8.91□□□□□ -0.98
LTBR-212ENST00000543542 QRICH2Q9H0J4 1663 aa8.91□□□□□ -0.98
LTBR-212ENST00000543542 NUTM2FA1L443 756 aa8.9□□□□□ -0.98
LTBR-212ENST00000543542 GPRASP1Q5JY77 1395 aa8.89□□□□□ -0.99
LTBR-212ENST00000543542 ZEB1P37275 1124 aaPredicted RBP8.88□□□□□ -0.99
LTBR-212ENST00000543542 SLAIN2Q9P270 581 aa8.88□□□□□ -0.99
LTBR-212ENST00000543542 DCCP43146 1447 aa8.88□□□□□ -0.99
LTBR-212ENST00000543542 USP47Q96K76 1375 aa8.87□□□□□ -0.99
LTBR-212ENST00000543542 CDC42BPGQ6DT37 1551 aa8.87□□□□□ -0.99
LTBR-212ENST00000543542 SRPK2P78362 688 aaKnown RBP8.87□□□□□ -0.99
LTBR-212ENST00000543542 FBXO41Q8TF61 875 aa8.87□□□□□ -0.99
LTBR-212ENST00000543542 FMN2Q9NZ56 1722 aa8.87□□□□□ -0.99
LTBR-212ENST00000543542 EVC2Q86UK5 1308 aa8.86□□□□□ -0.99
LTBR-212ENST00000543542 ST20-MTHFSA0A0A6YYL1 179 aa8.86□□□□□ -0.99
LTBR-212ENST00000543542 WASLO00401 505 aaPredicted RBP8.86□□□□□ -0.99
LTBR-212ENST00000543542 EIF4G2P78344 907 aaKnown RBP eCLIP8.86□□□□□ -0.99
LTBR-212ENST00000543542 ESCO1Q5FWF5 840 aa8.86□□□□□ -0.99
LTBR-212ENST00000543542 CDK19Q9BWU1 502 aa8.86□□□□□ -0.99
LTBR-212ENST00000543542 ADGRB2O60241 1585 aa8.86□□□□□ -0.99
LTBR-212ENST00000543542 ROBO1Q9Y6N7 1651 aa8.85□□□□□ -0.99
LTBR-212ENST00000543542 RGPD8O14715 1765 aaPredicted RBP8.85□□□□□ -0.99
LTBR-212ENST00000543542 MST1RQ04912 1400 aa8.85□□□□□ -0.99
LTBR-212ENST00000543542 C1orf167Q5SNV9 1468 aa8.84□□□□□ -0.99
LTBR-212ENST00000543542 SLC24A1O60721 1099 aa8.84□□□□□ -0.99
LTBR-212ENST00000543542 ITSN1Q15811 1721 aa8.84□□□□□ -0.99
LTBR-212ENST00000543542 POLR3GLQ9BT43 218 aa8.84□□□□□ -0.99
LTBR-212ENST00000543542 CABP2Q9NPB3 220 aa8.84□□□□□ -0.99
LTBR-212ENST00000543542 HSPA5P11021 654 aaKnown RBP8.83□□□□□ -1
LTBR-212ENST00000543542 TMF1P82094 1093 aa8.83□□□□□ -1
LTBR-212ENST00000543542 ORAI2Q96SN7 254 aa8.83□□□□□ -1
LTBR-212ENST00000543542 TULP4Q9NRJ4 1543 aa8.83□□□□□ -1
LTBR-212ENST00000543542 PHLPP1O60346 1717 aa8.83□□□□□ -1
LTBR-212ENST00000543542 BRINP3Q76B58 766 aa8.82□□□□□ -1
LTBR-212ENST00000543542 PMFBP1Q8TBY8 1022 aa8.82□□□□□ -1
LTBR-212ENST00000543542 NUDT16Q96DE0 195 aaKnown RBP8.82□□□□□ -1
LTBR-212ENST00000543542 PHF8Q9UPP1 1060 aa8.82□□□□□ -1
LTBR-212ENST00000543542 KIF1AQ12756 1690 aa8.81□□□□□ -1
LTBR-212ENST00000543542 ANKARQ7Z5J8 1434 aa8.81□□□□□ -1
LTBR-212ENST00000543542 CDCA8Q53HL2 280 aa8.81□□□□□ -1
LTBR-212ENST00000543542 NGDNQ8NEJ9 315 aaKnown RBP8.81□□□□□ -1
LTBR-212ENST00000543542 TMC1Q8TDI8 760 aa8.81□□□□□ -1
LTBR-212ENST00000543542 SBNO2Q9Y2G9 1366 aa8.81□□□□□ -1
LTBR-212ENST00000543542 USP32Q8NFA0 1604 aa8.8□□□□□ -1
LTBR-212ENST00000543542 PSME1Q06323 249 aa8.8□□□□□ -1
LTBR-212ENST00000543542 ILDR1Q86SU0 546 aaPredicted RBP8.8□□□□□ -1
LTBR-212ENST00000543542 CCDC61Q9Y6R9 512 aa8.8□□□□□ -1
LTBR-212ENST00000543542 PPIP5K1Q6PFW1 1433 aa8.8□□□□□ -1
LTBR-212ENST00000543542 NPHP3Q7Z494 1330 aa8.8□□□□□ -1
LTBR-212ENST00000543542 PRR36Q9H6K5 1346 aa8.8□□□□□ -1
LTBR-212ENST00000543542 ATP7BP35670 1465 aa8.79□□□□□ -1
LTBR-212ENST00000543542 ATAD2Q6PL18 1390 aa8.79□□□□□ -1
LTBR-212ENST00000543542 FOXO3O43524 673 aa8.79□□□□□ -1
LTBR-212ENST00000543542 HSPA1LP34931 641 aa8.79□□□□□ -1
LTBR-212ENST00000543542 XPCQ01831 940 aaPredicted RBP8.79□□□□□ -1
LTBR-212ENST00000543542 DDX17Q92841 729 aaKnown RBP8.79□□□□□ -1
LTBR-212ENST00000543542 TESK2Q96S53 571 aa8.79□□□□□ -1
LTBR-212ENST00000543542 NHSL1Q5SYE7 1610 aa8.79□□□□□ -1
LTBR-212ENST00000543542 TOPAZ1Q8N9V7 1692 aa8.78□□□□□ -1
LTBR-212ENST00000543542 DISP3Q9P2K9 1392 aa8.78□□□□□ -1
LTBR-212ENST00000543542 PAK3O75914 559 aaPredicted RBP8.78□□□□□ -1
LTBR-212ENST00000543542 LMOD2Q6P5Q4 547 aa8.78□□□□□ -1
LTBR-212ENST00000543542 KRT28Q7Z3Y7 464 aa8.78□□□□□ -1
LTBR-212ENST00000543542 CABP1Q9NZU7 370 aa8.78□□□□□ -1
LTBR-212ENST00000543542 AHDC1Q5TGY3 1603 aaPredicted RBP8.77□□□□□ -1.01
LTBR-212ENST00000543542 PLEKHG5O94827 1062 aa8.77□□□□□ -1.01
LTBR-212ENST00000543542 HDGFL2Q7Z4V5 671 aaPredicted RBP8.77□□□□□ -1.01
LTBR-212ENST00000543542 ACEP12821 1306 aa8.77□□□□□ -1.01
LTBR-212ENST00000543542 LRRC59Q96AG4 307 aaKnown RBP8.76□□□□□ -1.01
LTBR-212ENST00000543542 PLEKHG3A1L390 1219 aa8.75□□□□□ -1.01
LTBR-212ENST00000543542 HAP1P54257 671 aaPredicted RBP8.75□□□□□ -1.01
LTBR-212ENST00000543542 PUS7Q96PZ0 661 aaKnown RBP8.75□□□□□ -1.01
LTBR-212ENST00000543542 SLC12A5Q9H2X9 1139 aa8.75□□□□□ -1.01
LTBR-212ENST00000543542 TERF2IPQ9NYB0 399 aa8.75□□□□□ -1.01
LTBR-212ENST00000543542 COL16A1Q07092 1604 aaPredicted RBP8.75□□□□□ -1.01
LTBR-212ENST00000543542 ZNF692Q9BU19 519 aaPredicted RBP8.74□□□□□ -1.01
LTBR-212ENST00000543542 SOS2Q07890 1332 aaPredicted RBP8.74□□□□□ -1.01
LTBR-212ENST00000543542 KTN1Q86UP2 1357 aaKnown RBP8.73□□□□□ -1.01
LTBR-212ENST00000543542 JCADQ9P266 1359 aa8.73□□□□□ -1.01
LTBR-212ENST00000543542 NINLQ9Y2I6 1382 aa8.73□□□□□ -1.01
LTBR-212ENST00000543542 AKAP12Q02952 1782 aa8.73□□□□□ -1.01
LTBR-212ENST00000543542 PXDNQ92626 1479 aa8.73□□□□□ -1.01
LTBR-212ENST00000543542 NUTM2BA6NNL0 878 aaPredicted RBP8.73□□□□□ -1.01
LTBR-212ENST00000543542 NUTM2EB1AL46 878 aaPredicted RBP8.73□□□□□ -1.01
LTBR-212ENST00000543542 NUTM2AQ8IVF1 878 aaPredicted RBP8.73□□□□□ -1.01
LTBR-212ENST00000543542 POLR3AO14802 1390 aaPredicted RBP8.73□□□□□ -1.01
LTBR-212ENST00000543542 TNS3Q68CZ2 1445 aa8.72□□□□□ -1.01
LTBR-212ENST00000543542 MEX3CQ5U5Q3 659 aaKnown RBP8.72□□□□□ -1.01
LTBR-212ENST00000543542 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.72□□□□□ -1.01
LTBR-212ENST00000543542 SBNO1A3KN83 1393 aa8.72□□□□□ -1.01
LTBR-212ENST00000543542 SHPRHQ149N8 1683 aa8.72□□□□□ -1.01
LTBR-212ENST00000543542 TRPM3Q9HCF6 1732 aaPredicted RBP8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms