RNA–Protein interactions for RNA: ENST00000542570.5

TOP3A-208, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-208ENST00000542570 CARD14Q9BXL6 1004 aa12.88□□□□□ -0.35
TOP3A-208ENST00000542570 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.87□□□□□ -0.35
TOP3A-208ENST00000542570 WASLO00401 505 aaPredicted RBP12.87□□□□□ -0.35
TOP3A-208ENST00000542570 PIP4K2BP78356 416 aa12.87□□□□□ -0.35
TOP3A-208ENST00000542570 MBD5Q9P267 1494 aa12.87□□□□□ -0.35
TOP3A-208ENST00000542570 CALD1Q05682 793 aaKnown RBP12.86□□□□□ -0.35
TOP3A-208ENST00000542570 C1orf141Q5JVX7 400 aa12.86□□□□□ -0.35
TOP3A-208ENST00000542570 C20orf194Q5TEA3 1177 aa12.86□□□□□ -0.35
TOP3A-208ENST00000542570 TSPYL4Q9UJ04 414 aa12.86□□□□□ -0.35
TOP3A-208ENST00000542570 NUTM2BA6NNL0 878 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-208ENST00000542570 NUTM2EB1AL46 878 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-208ENST00000542570 MS4A1P11836 297 aa12.86□□□□□ -0.35
TOP3A-208ENST00000542570 AIMP1Q12904 312 aaKnown RBP12.86□□□□□ -0.35
TOP3A-208ENST00000542570 NUTM2AQ8IVF1 878 aaPredicted RBP12.86□□□□□ -0.35
TOP3A-208ENST00000542570 ZKSCAN2Q63HK3 967 aa12.85□□□□□ -0.35
TOP3A-208ENST00000542570 CHD1O14646 1710 aa12.85□□□□□ -0.35
TOP3A-208ENST00000542570 C1orf115Q9H7X2 142 aa12.85□□□□□ -0.35
TOP3A-208ENST00000542570 DUOX2Q9NRD8 1548 aa12.85□□□□□ -0.35
TOP3A-208ENST00000542570 ABCC10Q5T3U5 1492 aa12.85□□□□□ -0.35
TOP3A-208ENST00000542570 PRAG1Q86YV5 1406 aa12.84□□□□□ -0.35
TOP3A-208ENST00000542570 MCM10Q7L590 875 aa12.84□□□□□ -0.35
TOP3A-208ENST00000542570 RWDD1Q9H446 243 aaPredicted RBP12.84□□□□□ -0.35
TOP3A-208ENST00000542570 ZMYM3Q14202 1370 aa12.84□□□□□ -0.35
TOP3A-208ENST00000542570 POGZQ7Z3K3 1410 aa12.83□□□□□ -0.36
TOP3A-208ENST00000542570 AMER1Q5JTC6 1135 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-208ENST00000542570 MFAP1P55081 439 aaKnown RBP12.83□□□□□ -0.36
TOP3A-208ENST00000542570 LMOD3Q0VAK6 560 aa12.83□□□□□ -0.36
TOP3A-208ENST00000542570 FKBP5Q13451 457 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-208ENST00000542570 ANKRD45Q5TZF3 282 aa12.83□□□□□ -0.36
TOP3A-208ENST00000542570 FYB1O15117 783 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 AEBP2Q6ZN18 517 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-208ENST00000542570 RAPGEF4Q8WZA2 1011 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 TNRQ92752 1358 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 DNMT1P26358 1616 aaKnown RBP12.82□□□□□ -0.36
TOP3A-208ENST00000542570 ABCA8O94911 1581 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 FAM83GA6ND36 823 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 ITSN2Q9NZM3 1697 aa12.82□□□□□ -0.36
TOP3A-208ENST00000542570 WWC1Q8IX03 1113 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 DZIP1LQ8IYY4 767 aaKnown RBP12.81□□□□□ -0.36
TOP3A-208ENST00000542570 DDX54Q8TDD1 881 aaKnown RBP12.81□□□□□ -0.36
TOP3A-208ENST00000542570 ARHGEF12Q9NZN5 1544 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 KCNA6P17658 529 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 ACEP12821 1306 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 HSP90AB2PQ58FF8 381 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 ZNF692Q9BU19 519 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-208ENST00000542570 SLKQ9H2G2 1235 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-208ENST00000542570 GPRASP1Q5JY77 1395 aa12.81□□□□□ -0.36
TOP3A-208ENST00000542570 SCAF11Q99590 1463 aaKnown RBP12.8□□□□□ -0.36
TOP3A-208ENST00000542570 CABLES1Q8TDN4 633 aa12.8□□□□□ -0.36
TOP3A-208ENST00000542570 PER1O15534 1290 aaPredicted RBP12.79□□□□□ -0.36
TOP3A-208ENST00000542570 CHRNA2Q15822 529 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 LTKP29376 864 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 TMPOP42166 694 aaKnown RBP12.79□□□□□ -0.36
TOP3A-208ENST00000542570 FOXD4L1Q9NU39 408 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 TTC37Q6PGP7 1564 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 PHF8Q9UPP1 1060 aa12.79□□□□□ -0.36
TOP3A-208ENST00000542570 ATAD2Q6PL18 1390 aa12.78□□□□□ -0.36
TOP3A-208ENST00000542570 KCNJ4P48050 445 aa12.78□□□□□ -0.36
TOP3A-208ENST00000542570 NOL8Q76FK4 1167 aaKnown RBP12.78□□□□□ -0.36
TOP3A-208ENST00000542570 TRIM6-TRIM34B2RNG4 842 aa12.77□□□□□ -0.36
TOP3A-208ENST00000542570 DDX17Q92841 729 aaKnown RBP12.77□□□□□ -0.36
TOP3A-208ENST00000542570 NOB1Q9ULX3 412 aaKnown RBP12.77□□□□□ -0.36
TOP3A-208ENST00000542570 GNAI1P63096 354 aa12.77□□□□□ -0.37
TOP3A-208ENST00000542570 AEBP1Q8IUX7 1158 aa12.77□□□□□ -0.37
TOP3A-208ENST00000542570 PRDM11Q9NQV5 511 aa12.77□□□□□ -0.37
TOP3A-208ENST00000542570 UGGT1Q9NYU2 1555 aa12.77□□□□□ -0.37
TOP3A-208ENST00000542570 NAP1L2Q9ULW6 460 aaPredicted RBP12.77□□□□□ -0.37
TOP3A-208ENST00000542570 TWISTNBQ3B726 338 aaPredicted RBP12.77□□□□□ -0.37
TOP3A-208ENST00000542570 PDE4AP27815 886 aa12.76□□□□□ -0.37
TOP3A-208ENST00000542570 FAM177BA6PVY3 158 aa12.76□□□□□ -0.37
TOP3A-208ENST00000542570 NOP58Q9Y2X3 529 aaKnown RBP12.76□□□□□ -0.37
TOP3A-208ENST00000542570 ATP7AQ04656 1500 aa12.76□□□□□ -0.37
TOP3A-208ENST00000542570 ZNF530Q6P9A1 599 aaPredicted RBP12.75□□□□□ -0.37
TOP3A-208ENST00000542570 TOM1L2Q6ZVM7 507 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 TTC5Q8N0Z6 440 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 UHRF1BP1LA0JNW5 1464 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 SLC4A2P04920 1241 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 RIMS2Q9UQ26 1411 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 ERICH6BQ5W0A0 696 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 NPATQ14207 1427 aa12.75□□□□□ -0.37
TOP3A-208ENST00000542570 ADAMTS2O95450 1211 aa12.74□□□□□ -0.37
TOP3A-208ENST00000542570 NCLP19338 710 aaKnown RBP12.74□□□□□ -0.37
TOP3A-208ENST00000542570 BECN1Q14457 450 aa12.74□□□□□ -0.37
TOP3A-208ENST00000542570 SAMD9LQ8IVG5 1584 aa12.74□□□□□ -0.37
TOP3A-208ENST00000542570 CHMP4BQ9H444 224 aaKnown RBP12.74□□□□□ -0.37
TOP3A-208ENST00000542570 SLFN5Q08AF3 891 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 TEX14Q8IWB6 1497 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 TSPOAP1O95153 1857 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 ADGRL2O95490 1459 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 SHANK2Q9UPX8 1470 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 C9orf78Q9NZ63 289 aaPredicted RBP12.73□□□□□ -0.37
TOP3A-208ENST00000542570 KAT6BQ8WYB5 2073 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 RALGAPBQ86X10 1494 aa12.73□□□□□ -0.37
TOP3A-208ENST00000542570 MPRIPQ6WCQ1 1025 aa12.72□□□□□ -0.37
TOP3A-208ENST00000542570 RILPL2Q969X0 211 aa12.72□□□□□ -0.37
TOP3A-208ENST00000542570 SPINK5Q9NQ38 1064 aaPredicted RBP12.72□□□□□ -0.37
TOP3A-208ENST00000542570 UHRF1BP1Q6BDS2 1440 aa12.72□□□□□ -0.37
TOP3A-208ENST00000542570 CASC1Q6TDU7 716 aa12.72□□□□□ -0.37
TOP3A-208ENST00000542570 ORAI2Q96SN7 254 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms