RNA–Protein interactions for RNA: ENST00000540865.5

SNHG1-214, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 784 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-214ENST00000540865 NPHP4O75161 1426 aaPredicted RBP7.58□□□□□ -1.2
SNHG1-214ENST00000540865 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.58□□□□□ -1.27e-33■□□□□ 8.4
SNHG1-214ENST00000540865 MED14O60244 1454 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 CCDC18Q5T9S5 1454 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 ZNF687Q8N1G0 1237 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 CFDP1Q9UEE9 299 aaPredicted RBP7.57□□□□□ -1.2
SNHG1-214ENST00000540865 VWDEQ8N2E2 1590 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 NEURL4Q96JN8 1562 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 ATP7AQ04656 1500 aa7.57□□□□□ -1.2
SNHG1-214ENST00000540865 GPATCH8Q9UKJ3 1502 aaKnown RBP7.57□□□□□ -1.2
SNHG1-214ENST00000540865 CLTCQ00610 1675 aaKnown RBP7.57□□□□□ -1.2
SNHG1-214ENST00000540865 CASKIN1Q8WXD9 1431 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 MIA2Q96PC5 1412 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 POTEAQ6S8J7 498 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 KDM2AQ9Y2K7 1162 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 SRCAPQ6ZRS2 3230 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 SYCP2Q9BX26 1530 aa7.56□□□□□ -1.2
SNHG1-214ENST00000540865 DHX29Q7Z478 1369 aaKnown RBP7.56□□□□□ -1.2
SNHG1-214ENST00000540865 GPR153Q6NV75 609 aa7.55□□□□□ -1.2
SNHG1-214ENST00000540865 ZSWIM6Q9HCJ5 1215 aa7.55□□□□□ -1.2
SNHG1-214ENST00000540865 LRRC7Q96NW7 1537 aa7.55□□□□□ -1.2
SNHG1-214ENST00000540865 PZPP20742 1482 aa7.55□□□□□ -1.2
SNHG1-214ENST00000540865 NLRP1Q9C000 1473 aa7.55□□□□□ -1.2
SNHG1-214ENST00000540865 FAM135AQ9P2D6 1515 aa7.54□□□□□ -1.2
SNHG1-214ENST00000540865 SUPT6HQ7KZ85 1726 aaKnown RBP7.54□□□□□ -1.2
SNHG1-214ENST00000540865 WASHC2CQ9Y4E1 1318 aa7.53□□□□□ -1.2
SNHG1-214ENST00000540865 RTEL1-TNFRSF6BF6WH68 1400 aa7.53□□□□□ -1.2
SNHG1-214ENST00000540865 KIF3BO15066 747 aa7.53□□□□□ -1.2
SNHG1-214ENST00000540865 CCNB3Q8WWL7 1395 aa7.53□□□□□ -1.2
SNHG1-214ENST00000540865 INO80Q9ULG1 1556 aaPredicted RBP7.53□□□□□ -1.2
SNHG1-214ENST00000540865 FAM135BQ49AJ0 1406 aa7.52□□□□□ -1.2
SNHG1-214ENST00000540865 DEPDC5O75140 1603 aa7.52□□□□□ -1.2
SNHG1-214ENST00000540865 UGGT1Q9NYU2 1555 aa7.52□□□□□ -1.21
SNHG1-214ENST00000540865 ANKRD13DQ6ZTN6 518 aa7.52□□□□□ -1.21
SNHG1-214ENST00000540865 PTGER2P43116 358 aa7.51□□□□□ -1.21
SNHG1-214ENST00000540865 POLR1AO95602 1720 aaPredicted RBP7.51□□□□□ -1.21
SNHG1-214ENST00000540865 RNF17Q9BXT8 1623 aaKnown RBP7.51□□□□□ -1.21
SNHG1-214ENST00000540865 KDM5DQ9BY66 1539 aa7.51□□□□□ -1.21
SNHG1-214ENST00000540865 MBD5Q9P267 1494 aa7.5□□□□□ -1.21
SNHG1-214ENST00000540865 CDC42BPAQ5VT25 1732 aa7.5□□□□□ -1.21
SNHG1-214ENST00000540865 ARSIQ5FYB1 569 aa7.5□□□□□ -1.21
SNHG1-214ENST00000540865 VSIG10Q8N0Z9 540 aa7.5□□□□□ -1.21
SNHG1-214ENST00000540865 KHSRPQ92945 711 aaKnown RBP eCLIP7.5□□□□□ -1.219e-13■■■□□ 17.6
SNHG1-214ENST00000540865 SYNMO15061 1565 aa7.5□□□□□ -1.21
SNHG1-214ENST00000540865 ZNF644Q9H582 1327 aaPredicted RBP7.5□□□□□ -1.21
SNHG1-214ENST00000540865 FYCO1Q9BQS8 1478 aa7.49□□□□□ -1.21
SNHG1-214ENST00000540865 RSPH4AQ5TD94 716 aa7.49□□□□□ -1.21
SNHG1-214ENST00000540865 UPF1Q92900 1129 aaKnown RBP eCLIP7.48□□□□□ -1.21
SNHG1-214ENST00000540865 LRRIQ1Q96JM4 1722 aa7.48□□□□□ -1.21
SNHG1-214ENST00000540865 IQGAP1P46940 1657 aa7.47□□□□□ -1.21
SNHG1-214ENST00000540865 ADGBQ8N7X0 1667 aa7.47□□□□□ -1.21
SNHG1-214ENST00000540865 LSM11P83369 360 aaKnown RBP eCLIP7.47□□□□□ -1.21
SNHG1-214ENST00000540865 TXNDC2Q86VQ3 553 aa7.47□□□□□ -1.21
SNHG1-214ENST00000540865 SCAF11Q99590 1463 aaKnown RBP7.47□□□□□ -1.21
SNHG1-214ENST00000540865 MTUS2Q5JR59 1369 aa7.46□□□□□ -1.21
SNHG1-214ENST00000540865 LTKP29376 864 aa7.46□□□□□ -1.22
SNHG1-214ENST00000540865 EID1Q9Y6B2 187 aa7.46□□□□□ -1.22
SNHG1-214ENST00000540865 TMEM94Q12767 1356 aa7.46□□□□□ -1.22
SNHG1-214ENST00000540865 ZNF316A6NFI3 1004 aaPredicted RBP7.45□□□□□ -1.22
SNHG1-214ENST00000540865 KCNA6P17658 529 aa7.45□□□□□ -1.22
SNHG1-214ENST00000540865 LARP6Q9BRS8 491 aaKnown RBP7.45□□□□□ -1.22
SNHG1-214ENST00000540865 STRCP1A6NGW2 1772 aa7.45□□□□□ -1.22
SNHG1-214ENST00000540865 JCADQ9P266 1359 aa7.45□□□□□ -1.22
SNHG1-214ENST00000540865 ERVK-7P63135 1459 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 CCDC141Q6ZP82 1450 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 ARHGAP23Q9P227 1491 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 TSPY4P0CV99 314 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 TSPY10P0CW01 314 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 ZNF772Q68DY9 489 aaPredicted RBP7.44□□□□□ -1.22
SNHG1-214ENST00000540865 CRISPLD2Q9H0B8 497 aa7.44□□□□□ -1.22
SNHG1-214ENST00000540865 LRRC9Q6ZRR7 1453 aa7.43□□□□□ -1.22
SNHG1-214ENST00000540865 PROSER2Q86WR7 435 aaPredicted RBP7.43□□□□□ -1.22
SNHG1-214ENST00000540865 CEP162Q5TB80 1403 aa7.43□□□□□ -1.22
SNHG1-214ENST00000540865 NCOA2Q15596 1464 aa7.43□□□□□ -1.22
SNHG1-214ENST00000540865 SLIT1O75093 1534 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 C2orf72A6NCS6 295 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 PDE4AP27815 886 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 SLAIN2Q9P270 581 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 SPATA31A6Q5VVP1 1343 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 ABCC3O15438 1527 aa7.42□□□□□ -1.22
SNHG1-214ENST00000540865 ZC3H13Q5T200 1668 aaKnown RBP7.41□□□□□ -1.22
SNHG1-214ENST00000540865 TMC2Q8TDI7 906 aa7.41□□□□□ -1.22
SNHG1-214ENST00000540865 TRIM52Q96A61 297 aa7.41□□□□□ -1.22
SNHG1-214ENST00000540865 GPHNQ9NQX3 736 aaPredicted RBP7.41□□□□□ -1.22
SNHG1-214ENST00000540865 WDR70Q9NW82 654 aa7.41□□□□□ -1.22
SNHG1-214ENST00000540865 TMEM2Q9UHN6 1383 aa7.41□□□□□ -1.22
SNHG1-214ENST00000540865 TIAM1Q13009 1591 aa7.41□□□□□ -1.22
SNHG1-214ENST00000540865 KIF3CO14782 793 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 RXRBP28702 533 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 DSG2Q14126 1118 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 MEX3CQ5U5Q3 659 aaKnown RBP7.4□□□□□ -1.22
SNHG1-214ENST00000540865 DDX27Q96GQ7 796 aaKnown RBP7.4□□□□□ -1.22
SNHG1-214ENST00000540865 PLA2G2EQ9NZK7 142 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 MSH6P52701 1360 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 ARHGAP31Q2M1Z3 1444 aa7.4□□□□□ -1.22
SNHG1-214ENST00000540865 MAP3K1Q13233 1512 aa7.39□□□□□ -1.23
SNHG1-214ENST00000540865 CAMSAP2Q08AD1 1489 aa7.39□□□□□ -1.23
SNHG1-214ENST00000540865 FGD6Q6ZV73 1430 aa7.39□□□□□ -1.23
SNHG1-214ENST00000540865 NUDT7P0C024 238 aa7.39□□□□□ -1.23
SNHG1-214ENST00000540865 MFSD10Q14728 455 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms