RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 ESPNB1AK53 854 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 DISP1Q96F81 1524 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 MBD5Q9P267 1494 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 MCTP1Q6DN14 999 aa16.13■□□□□ 0.17
MSH6-210ENST00000540021 ADGRF5Q8IZF2 1346 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 HMOX1P09601 288 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 TMEM57Q8N5G2 664 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 CARD14Q9BXL6 1004 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 NSD3Q9BZ95 1437 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 SSH1Q8WYL5 1049 aa16.12■□□□□ 0.17
MSH6-210ENST00000540021 A2MP01023 1474 aa16.11■□□□□ 0.17
MSH6-210ENST00000540021 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
MSH6-210ENST00000540021 ATF7IPQ6VMQ6 1270 aa16.11■□□□□ 0.17
MSH6-210ENST00000540021 FAM13BQ9NYF5 915 aa16.11■□□□□ 0.17
MSH6-210ENST00000540021 CHMP4BQ9H444 224 aaKnown RBP16.11■□□□□ 0.17
MSH6-210ENST00000540021 NASPP49321 788 aaPredicted RBP16.1■□□□□ 0.17
MSH6-210ENST00000540021 WDR63Q8IWG1 891 aa16.1■□□□□ 0.17
MSH6-210ENST00000540021 PLPPR3Q6T4P5 718 aa16.1■□□□□ 0.17
MSH6-210ENST00000540021 ATP10BO94823 1461 aa16.1■□□□□ 0.17
MSH6-210ENST00000540021 TRIM27P14373 513 aa16.09■□□□□ 0.17
MSH6-210ENST00000540021 RBM10P98175 930 aaKnown RBP16.09■□□□□ 0.17
MSH6-210ENST00000540021 SKOR2Q2VWA4 1001 aaPredicted RBP16.09■□□□□ 0.17
MSH6-210ENST00000540021 HDGFL2Q7Z4V5 671 aaPredicted RBP16.09■□□□□ 0.17
MSH6-210ENST00000540021 EVC2Q86UK5 1308 aa16.09■□□□□ 0.17
MSH6-210ENST00000540021 AAMPQ13685 434 aa16.08■□□□□ 0.17
MSH6-210ENST00000540021 CAVIN1Q6NZI2 390 aaKnown RBP16.08■□□□□ 0.17
MSH6-210ENST00000540021 PLEKHG5O94827 1062 aa16.08■□□□□ 0.16
MSH6-210ENST00000540021 DIAPH1O60610 1272 aaKnown RBP16.07■□□□□ 0.16
MSH6-210ENST00000540021 TNPO1Q92973 898 aaKnown RBP16.07■□□□□ 0.16
MSH6-210ENST00000540021 NINLQ9Y2I6 1382 aa16.07■□□□□ 0.16
MSH6-210ENST00000540021 ADAMTS12P58397 1594 aa16.07■□□□□ 0.16
MSH6-210ENST00000540021 ADGRL2O95490 1459 aa16.07■□□□□ 0.16
MSH6-210ENST00000540021 SLC4A10Q6U841 1118 aa16.07■□□□□ 0.16
MSH6-210ENST00000540021 TERF2IPQ9NYB0 399 aa16.07■□□□□ 0.16
MSH6-210ENST00000540021 ITSN2Q9NZM3 1697 aa16.06■□□□□ 0.16
MSH6-210ENST00000540021 THUMPD2Q9BTF0 503 aaKnown RBP16.06■□□□□ 0.16
MSH6-210ENST00000540021 PKNOX2Q96KN3 472 aa16.06■□□□□ 0.16
MSH6-210ENST00000540021 RNF214Q8ND24 703 aa16.06■□□□□ 0.16
MSH6-210ENST00000540021 R3HCC1Q9Y3T6 440 aaKnown RBP16.06■□□□□ 0.16
MSH6-210ENST00000540021 KIF16BQ96L93 1317 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 PTMSP20962 102 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 ASXL1Q8IXJ9 1541 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 CHD1LQ86WJ1 897 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 MPNDQ8N594 471 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 MAGI2Q86UL8 1455 aa16.05■□□□□ 0.16
MSH6-210ENST00000540021 SCAF11Q99590 1463 aaKnown RBP16.04■□□□□ 0.16
MSH6-210ENST00000540021 RBM42Q9BTD8 480 aaKnown RBP16.04■□□□□ 0.16
MSH6-210ENST00000540021 ZNF521Q96K83 1311 aa16.04■□□□□ 0.16
MSH6-210ENST00000540021 TMPOP42166 694 aaKnown RBP16.03■□□□□ 0.16
MSH6-210ENST00000540021 SSFA2P28290 1259 aa16.03■□□□□ 0.16
MSH6-210ENST00000540021 GPRASP1Q5JY77 1395 aa16.03■□□□□ 0.16
MSH6-210ENST00000540021 STAC3Q96MF2 364 aa16.03■□□□□ 0.16
MSH6-210ENST00000540021 USP19O94966 1318 aa16.02■□□□□ 0.16
MSH6-210ENST00000540021 PRKAR2BP31323 418 aa16.02■□□□□ 0.16
MSH6-210ENST00000540021 KIAA1211Q6ZU35 1233 aa16.02■□□□□ 0.16
MSH6-210ENST00000540021 ST18O60284 1047 aa16.02■□□□□ 0.15
MSH6-210ENST00000540021 PRPF40AO75400 957 aaKnown RBP16.01■□□□□ 0.15
MSH6-210ENST00000540021 TARBP1Q13395 1621 aaKnown RBP16.01■□□□□ 0.15
MSH6-210ENST00000540021 TRIM6-TRIM34B2RNG4 842 aa16.01■□□□□ 0.15
MSH6-210ENST00000540021 K7ELQ4 463 aaPredicted RBP16.01■□□□□ 0.15
MSH6-210ENST00000540021 SYCP2Q9BX26 1530 aa16.01■□□□□ 0.15
MSH6-210ENST00000540021 NUTM2FA1L443 756 aa16■□□□□ 0.15
MSH6-210ENST00000540021 FBLN1P23142 703 aa16■□□□□ 0.15
MSH6-210ENST00000540021 SCAPERQ9BY12 1400 aa15.99■□□□□ 0.15
MSH6-210ENST00000540021 CLCN1P35523 988 aa15.99■□□□□ 0.15
MSH6-210ENST00000540021 CDC45O75419 566 aa15.99■□□□□ 0.15
MSH6-210ENST00000540021 PIK3C2GO75747 1445 aa15.99■□□□□ 0.15
MSH6-210ENST00000540021 RILPL2Q969X0 211 aa15.98■□□□□ 0.15
MSH6-210ENST00000540021 TRMT2AQ8IZ69 625 aaKnown RBP15.97■□□□□ 0.15
MSH6-210ENST00000540021 VGFO15240 615 aaPredicted RBP15.97■□□□□ 0.15
MSH6-210ENST00000540021 PBRM1Q86U86 1689 aa15.96■□□□□ 0.15
MSH6-210ENST00000540021 MLECQ14165 292 aa15.96■□□□□ 0.15
MSH6-210ENST00000540021 ANTXR1Q9H6X2 564 aa15.96■□□□□ 0.14
MSH6-210ENST00000540021 ADGBQ8N7X0 1667 aa15.95■□□□□ 0.14
MSH6-210ENST00000540021 RRP9O43818 475 aaKnown RBP15.95■□□□□ 0.14
MSH6-210ENST00000540021 MCCP23508 829 aa15.95■□□□□ 0.14
MSH6-210ENST00000540021 CCDC173Q0VFZ6 552 aa15.95■□□□□ 0.14
MSH6-210ENST00000540021 ZMYND15Q9H091 742 aa15.95■□□□□ 0.14
MSH6-210ENST00000540021 ESF1Q9H501 851 aaKnown RBP15.95■□□□□ 0.14
MSH6-210ENST00000540021 SHANK2Q9UPX8 1470 aa15.95■□□□□ 0.14
MSH6-210ENST00000540021 NUCB2P80303 420 aa15.94■□□□□ 0.14
MSH6-210ENST00000540021 TBC1D9Q6ZT07 1266 aa15.94■□□□□ 0.14
MSH6-210ENST00000540021 NECTIN2Q92692 538 aa15.94■□□□□ 0.14
MSH6-210ENST00000540021 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.94■□□□□ 0.14
MSH6-210ENST00000540021 KIAA2012Q0VF49 1180 aa15.93■□□□□ 0.14
MSH6-210ENST00000540021 TWISTNBQ3B726 338 aaPredicted RBP15.93■□□□□ 0.14
MSH6-210ENST00000540021 NUP160Q12769 1436 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 INTS3Q68E01 1043 aaKnown RBP15.92■□□□□ 0.14
MSH6-210ENST00000540021 C14orf37Q86TY3 774 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 CIZ1Q9ULV3 898 aaPredicted RBP15.92■□□□□ 0.14
MSH6-210ENST00000540021 PLA2R1Q13018 1463 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 WDR7Q9Y4E6 1490 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 GCC1Q96CN9 775 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 XPCQ01831 940 aaPredicted RBP15.92■□□□□ 0.14
MSH6-210ENST00000540021 PRAM1Q96QH2 718 aa15.92■□□□□ 0.14
MSH6-210ENST00000540021 NEK4P51957 841 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 ANO2Q9NQ90 1003 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 INSRP06213 1382 aa15.91■□□□□ 0.14
MSH6-210ENST00000540021 DCTN1Q14203 1278 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms