RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 PRAM1Q96QH2 718 aa15.52■□□□□ 0.08
HMGA2-209ENST00000539662 C1orf167Q5SNV9 1468 aa15.52■□□□□ 0.07
HMGA2-209ENST00000539662 COL16A1Q07092 1604 aaPredicted RBP15.51■□□□□ 0.07
HMGA2-209ENST00000539662 NUTM2FA1L443 756 aa15.51■□□□□ 0.07
HMGA2-209ENST00000539662 STAC3Q96MF2 364 aa15.51■□□□□ 0.07
HMGA2-209ENST00000539662 ORAI2Q96SN7 254 aa15.51■□□□□ 0.07
HMGA2-209ENST00000539662 CDC42BPGQ6DT37 1551 aa15.5■□□□□ 0.07
HMGA2-209ENST00000539662 DLC1Q96QB1 1528 aa15.5■□□□□ 0.07
HMGA2-209ENST00000539662 ARHGEF28Q8N1W1 1705 aaKnown RBP15.5■□□□□ 0.07
HMGA2-209ENST00000539662 KIAA1210Q9ULL0 1709 aa15.5■□□□□ 0.07
HMGA2-209ENST00000539662 NBPF8Q3BBV2 869 aa15.49■□□□□ 0.07
HMGA2-209ENST00000539662 SIRT1Q96EB6 747 aa15.49■□□□□ 0.07
HMGA2-209ENST00000539662 AHDC1Q5TGY3 1603 aaPredicted RBP15.49■□□□□ 0.07
HMGA2-209ENST00000539662 RGPD8O14715 1765 aaPredicted RBP15.49■□□□□ 0.07
HMGA2-209ENST00000539662 FMN2Q9NZ56 1722 aa15.48■□□□□ 0.07
HMGA2-209ENST00000539662 NHSL1Q5SYE7 1610 aa15.48■□□□□ 0.07
HMGA2-209ENST00000539662 TRPM1Q7Z4N2 1603 aa15.47■□□□□ 0.07
HMGA2-209ENST00000539662 MED1Q15648 1581 aaPredicted RBP15.47■□□□□ 0.07
HMGA2-209ENST00000539662 HIRIP3Q9BW71 556 aaPredicted RBP15.47■□□□□ 0.07
HMGA2-209ENST00000539662 POGKQ9P215 609 aa15.46■□□□□ 0.07
HMGA2-209ENST00000539662 MINK1Q8N4C8 1332 aaPredicted RBP15.45■□□□□ 0.06
HMGA2-209ENST00000539662 USP32Q8NFA0 1604 aa15.45■□□□□ 0.06
HMGA2-209ENST00000539662 DISP3Q9P2K9 1392 aa15.44■□□□□ 0.06
HMGA2-209ENST00000539662 ESCO1Q5FWF5 840 aa15.43■□□□□ 0.06
HMGA2-209ENST00000539662 ADGRB2O60241 1585 aa15.42■□□□□ 0.06
HMGA2-209ENST00000539662 TONSLQ96HA7 1378 aa15.41■□□□□ 0.06
HMGA2-209ENST00000539662 XPCQ01831 940 aaPredicted RBP15.41■□□□□ 0.06
HMGA2-209ENST00000539662 PRR36Q9H6K5 1346 aa15.4■□□□□ 0.06
HMGA2-209ENST00000539662 LRP6O75581 1613 aa15.39■□□□□ 0.05
HMGA2-209ENST00000539662 JCADQ9P266 1359 aa15.39■□□□□ 0.05
HMGA2-209ENST00000539662 FOXO3O43524 673 aa15.39■□□□□ 0.05
HMGA2-209ENST00000539662 SHPRHQ149N8 1683 aa15.38■□□□□ 0.05
HMGA2-209ENST00000539662 ILDR2Q71H61 639 aa15.38■□□□□ 0.05
HMGA2-209ENST00000539662 PXDNQ92626 1479 aa15.38■□□□□ 0.05
HMGA2-209ENST00000539662 SOS2Q07890 1332 aaPredicted RBP15.38■□□□□ 0.05
HMGA2-209ENST00000539662 WASLO00401 505 aaPredicted RBP15.37■□□□□ 0.05
HMGA2-209ENST00000539662 QRICH2Q9H0J4 1663 aa15.37■□□□□ 0.05
HMGA2-209ENST00000539662 ROCK2O75116 1388 aaKnown RBP15.36■□□□□ 0.05
HMGA2-209ENST00000539662 PMFBP1Q8TBY8 1022 aa15.36■□□□□ 0.05
HMGA2-209ENST00000539662 RGS17Q9UGC6 210 aaPredicted RBP15.36■□□□□ 0.05
HMGA2-209ENST00000539662 PNPLA6Q8IY17 1366 aa15.35■□□□□ 0.05
HMGA2-209ENST00000539662 TULP4Q9NRJ4 1543 aa15.34■□□□□ 0.05
HMGA2-209ENST00000539662 LRRC59Q96AG4 307 aaKnown RBP15.34■□□□□ 0.05
HMGA2-209ENST00000539662 CDK19Q9BWU1 502 aa15.34■□□□□ 0.05
HMGA2-209ENST00000539662 PHF8Q9UPP1 1060 aa15.34■□□□□ 0.05
HMGA2-209ENST00000539662 CENPJQ9HC77 1338 aaPredicted RBP15.34■□□□□ 0.05
HMGA2-209ENST00000539662 KIF1AQ12756 1690 aa15.34■□□□□ 0.05
HMGA2-209ENST00000539662 GPRASP1Q5JY77 1395 aa15.34■□□□□ 0.05
HMGA2-209ENST00000539662 NUTM2BA6NNL0 878 aaPredicted RBP15.33■□□□□ 0.04
HMGA2-209ENST00000539662 NUTM2EB1AL46 878 aaPredicted RBP15.33■□□□□ 0.04
HMGA2-209ENST00000539662 NUTM2AQ8IVF1 878 aaPredicted RBP15.33■□□□□ 0.04
HMGA2-209ENST00000539662 ANKARQ7Z5J8 1434 aa15.33■□□□□ 0.04
HMGA2-209ENST00000539662 ATP7BP35670 1465 aa15.33■□□□□ 0.04
HMGA2-209ENST00000539662 RALGAPBQ86X10 1494 aa15.33■□□□□ 0.04
HMGA2-209ENST00000539662 NPHP3Q7Z494 1330 aa15.32■□□□□ 0.04
HMGA2-209ENST00000539662 CCER1Q8TC90 406 aaPredicted RBP15.31■□□□□ 0.04
HMGA2-209ENST00000539662 NUDT16Q96DE0 195 aaKnown RBP15.31■□□□□ 0.04
HMGA2-209ENST00000539662 SPATA31A6Q5VVP1 1343 aa15.3■□□□□ 0.04
HMGA2-209ENST00000539662 KRT28Q7Z3Y7 464 aa15.3■□□□□ 0.04
HMGA2-209ENST00000539662 TOPAZ1Q8N9V7 1692 aa15.3■□□□□ 0.04
HMGA2-209ENST00000539662 CARD11Q9BXL7 1154 aa15.3■□□□□ 0.04
HMGA2-209ENST00000539662 CABP2Q9NPB3 220 aa15.3■□□□□ 0.04
HMGA2-209ENST00000539662 PHF23Q9BUL5 403 aaPredicted RBP15.29■□□□□ 0.04
HMGA2-209ENST00000539662 TRPM3Q9HCF6 1732 aaPredicted RBP15.29■□□□□ 0.04
HMGA2-209ENST00000539662 COL22A1Q8NFW1 1626 aaPredicted RBP15.28■□□□□ 0.04
HMGA2-209ENST00000539662 SPATA31A3Q5VYP0 1347 aa15.27■□□□□ 0.04
HMGA2-209ENST00000539662 CLSPNQ9HAW4 1339 aa15.27■□□□□ 0.04
HMGA2-209ENST00000539662 ITSN1Q15811 1721 aa15.27■□□□□ 0.04
HMGA2-209ENST00000539662 PLEKHG5O94827 1062 aa15.26■□□□□ 0.03
HMGA2-209ENST00000539662 PSME1Q06323 249 aa15.26■□□□□ 0.03
HMGA2-209ENST00000539662 POTEAQ6S8J7 498 aa15.26■□□□□ 0.03
HMGA2-209ENST00000539662 EIF3AQ14152 1382 aaKnown RBP15.25■□□□□ 0.03
HMGA2-209ENST00000539662 ADAMTS2O95450 1211 aa15.25■□□□□ 0.03
HMGA2-209ENST00000539662 SRPK2P78362 688 aaKnown RBP15.25■□□□□ 0.03
HMGA2-209ENST00000539662 MEX3CQ5U5Q3 659 aaKnown RBP15.24■□□□□ 0.03
HMGA2-209ENST00000539662 CABLES1Q8TDN4 633 aa15.24■□□□□ 0.03
HMGA2-209ENST00000539662 TNS3Q68CZ2 1445 aa15.24■□□□□ 0.03
HMGA2-209ENST00000539662 ACEP12821 1306 aa15.23■□□□□ 0.03
HMGA2-209ENST00000539662 ALS2Q96Q42 1657 aa15.23■□□□□ 0.03
HMGA2-209ENST00000539662 NGDNQ8NEJ9 315 aaKnown RBP15.23■□□□□ 0.03
HMGA2-209ENST00000539662 CCDC61Q9Y6R9 512 aa15.23■□□□□ 0.03
HMGA2-209ENST00000539662 PPIP5K1Q6PFW1 1433 aa15.23■□□□□ 0.03
HMGA2-209ENST00000539662 PLEKHG3A1L390 1219 aa15.22■□□□□ 0.03
HMGA2-209ENST00000539662 LMOD2Q6P5Q4 547 aa15.22■□□□□ 0.03
HMGA2-209ENST00000539662 C8orf37Q96NL8 207 aa15.22■□□□□ 0.03
HMGA2-209ENST00000539662 ABCA3Q99758 1704 aa15.22■□□□□ 0.03
HMGA2-209ENST00000539662 SBNO1A3KN83 1393 aa15.22■□□□□ 0.03
HMGA2-209ENST00000539662 ST20-MTHFSA0A0A6YYL1 179 aa15.21■□□□□ 0.03
HMGA2-209ENST00000539662 CABP1Q9NZU7 370 aa15.21■□□□□ 0.03
HMGA2-209ENST00000539662 POLR3AO14802 1390 aaPredicted RBP15.21■□□□□ 0.02
HMGA2-209ENST00000539662 MARF1Q9Y4F3 1742 aaKnown RBP15.2■□□□□ 0.02
HMGA2-209ENST00000539662 EVC2Q86UK5 1308 aa15.2■□□□□ 0.02
HMGA2-209ENST00000539662 TESK2Q96S53 571 aa15.2■□□□□ 0.02
HMGA2-209ENST00000539662 TIMELESSQ9UNS1 1208 aa15.2■□□□□ 0.02
HMGA2-209ENST00000539662 AFF2P51816 1311 aa15.19■□□□□ 0.02
HMGA2-209ENST00000539662 CRYBG1Q9Y4K1 1723 aa15.19■□□□□ 0.02
HMGA2-209ENST00000539662 PAK3O75914 559 aaPredicted RBP15.18■□□□□ 0.02
HMGA2-209ENST00000539662 NUTM2GQ5VZR2 741 aa15.18■□□□□ 0.02
HMGA2-209ENST00000539662 SBNO2Q9Y2G9 1366 aa15.18■□□□□ 0.02
HMGA2-209ENST00000539662 USP47Q96K76 1375 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms