RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 TECPR2O15040 1411 aa16.95■□□□□ 0.3
CLIP1-208ENST00000537004 SAFB2Q14151 953 aaKnown RBP eCLIP16.95■□□□□ 0.3
CLIP1-208ENST00000537004 ILDR2Q71H61 639 aa16.95■□□□□ 0.3
CLIP1-208ENST00000537004 NUTM2FA1L443 756 aa16.94■□□□□ 0.3
CLIP1-208ENST00000537004 ORAI2Q96SN7 254 aa16.94■□□□□ 0.3
CLIP1-208ENST00000537004 MED1Q15648 1581 aaPredicted RBP16.93■□□□□ 0.3
CLIP1-208ENST00000537004 TRAK1Q9UPV9 953 aa16.92■□□□□ 0.3
CLIP1-208ENST00000537004 C1orf167Q5SNV9 1468 aa16.92■□□□□ 0.3
CLIP1-208ENST00000537004 PRAM1Q96QH2 718 aa16.92■□□□□ 0.3
CLIP1-208ENST00000537004 ADGRB1O14514 1584 aa16.9■□□□□ 0.3
CLIP1-208ENST00000537004 PHLPP1O60346 1717 aa16.9■□□□□ 0.3
CLIP1-208ENST00000537004 L3MBTL2Q969R5 705 aa16.89■□□□□ 0.29
CLIP1-208ENST00000537004 STAC3Q96MF2 364 aa16.89■□□□□ 0.29
CLIP1-208ENST00000537004 COL16A1Q07092 1604 aaPredicted RBP16.88■□□□□ 0.29
CLIP1-208ENST00000537004 ESCO1Q5FWF5 840 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 SIRT1Q96EB6 747 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 POGKQ9P215 609 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 JCADQ9P266 1359 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 NBPF1Q3BBV0 1214 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 PHF23Q9BUL5 403 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-208ENST00000537004 HIRIP3Q9BW71 556 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-208ENST00000537004 LAMC1P11047 1609 aa16.87■□□□□ 0.29
CLIP1-208ENST00000537004 AHDC1Q5TGY3 1603 aaPredicted RBP16.87■□□□□ 0.29
CLIP1-208ENST00000537004 KNDC1Q76NI1 1749 aa16.85■□□□□ 0.29
CLIP1-208ENST00000537004 CDC42BPGQ6DT37 1551 aa16.84■□□□□ 0.29
CLIP1-208ENST00000537004 XPCQ01831 940 aaPredicted RBP16.84■□□□□ 0.29
CLIP1-208ENST00000537004 RGS17Q9UGC6 210 aaPredicted RBP16.84■□□□□ 0.29
CLIP1-208ENST00000537004 MINK1Q8N4C8 1332 aaPredicted RBP16.83■□□□□ 0.28
CLIP1-208ENST00000537004 FOXO3O43524 673 aa16.83■□□□□ 0.28
CLIP1-208ENST00000537004 MIER1Q8N108 512 aa16.82■□□□□ 0.28
CLIP1-208ENST00000537004 NUTM2BA6NNL0 878 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-208ENST00000537004 NUTM2EB1AL46 878 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-208ENST00000537004 NUTM2AQ8IVF1 878 aaPredicted RBP16.81■□□□□ 0.28
CLIP1-208ENST00000537004 LRRC59Q96AG4 307 aaKnown RBP16.81■□□□□ 0.28
CLIP1-208ENST00000537004 DLC1Q96QB1 1528 aa16.81■□□□□ 0.28
CLIP1-208ENST00000537004 LRP6O75581 1613 aa16.8■□□□□ 0.28
CLIP1-208ENST00000537004 SOS2Q07890 1332 aaPredicted RBP16.79■□□□□ 0.28
CLIP1-208ENST00000537004 NHSL1Q5SYE7 1610 aa16.79■□□□□ 0.28
CLIP1-208ENST00000537004 SPATA31A6Q5VVP1 1343 aa16.78■□□□□ 0.28
CLIP1-208ENST00000537004 NPHP3Q7Z494 1330 aa16.76■□□□□ 0.27
CLIP1-208ENST00000537004 PNPLA6Q8IY17 1366 aa16.76■□□□□ 0.27
CLIP1-208ENST00000537004 NBPF8Q3BBV2 869 aa16.76■□□□□ 0.27
CLIP1-208ENST00000537004 PMFBP1Q8TBY8 1022 aa16.76■□□□□ 0.27
CLIP1-208ENST00000537004 MEX3CQ5U5Q3 659 aaKnown RBP16.75■□□□□ 0.27
CLIP1-208ENST00000537004 PRR36Q9H6K5 1346 aa16.75■□□□□ 0.27
CLIP1-208ENST00000537004 FMN2Q9NZ56 1722 aa16.75■□□□□ 0.27
CLIP1-208ENST00000537004 WASLO00401 505 aaPredicted RBP16.75■□□□□ 0.27
CLIP1-208ENST00000537004 POTEAQ6S8J7 498 aa16.75■□□□□ 0.27
CLIP1-208ENST00000537004 PHF8Q9UPP1 1060 aa16.75■□□□□ 0.27
CLIP1-208ENST00000537004 SHPRHQ149N8 1683 aa16.73■□□□□ 0.27
CLIP1-208ENST00000537004 PXDNQ92626 1479 aa16.73■□□□□ 0.27
CLIP1-208ENST00000537004 ADAMTS2O95450 1211 aa16.72■□□□□ 0.27
CLIP1-208ENST00000537004 KRT28Q7Z3Y7 464 aa16.72■□□□□ 0.27
CLIP1-208ENST00000537004 ARHGEF28Q8N1W1 1705 aaKnown RBP16.72■□□□□ 0.27
CLIP1-208ENST00000537004 PLEKHG5O94827 1062 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 CDK19Q9BWU1 502 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 ADGRB2O60241 1585 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 KIAA1210Q9ULL0 1709 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 RGPD8O14715 1765 aaPredicted RBP16.7■□□□□ 0.26
CLIP1-208ENST00000537004 ROCK2O75116 1388 aaKnown RBP16.7■□□□□ 0.26
CLIP1-208ENST00000537004 USP32Q8NFA0 1604 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 C8orf37Q96NL8 207 aa16.7■□□□□ 0.26
CLIP1-208ENST00000537004 CENPJQ9HC77 1338 aaPredicted RBP16.69■□□□□ 0.26
CLIP1-208ENST00000537004 SOCS7O14512 581 aa16.69■□□□□ 0.26
CLIP1-208ENST00000537004 PSME1Q06323 249 aa16.69■□□□□ 0.26
CLIP1-208ENST00000537004 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
CLIP1-208ENST00000537004 NUDT16Q96DE0 195 aaKnown RBP16.68■□□□□ 0.26
CLIP1-208ENST00000537004 SPATA31A3Q5VYP0 1347 aa16.67■□□□□ 0.26
CLIP1-208ENST00000537004 LMOD2Q6P5Q4 547 aa16.67■□□□□ 0.26
CLIP1-208ENST00000537004 TULP4Q9NRJ4 1543 aa16.67■□□□□ 0.26
CLIP1-208ENST00000537004 AFF2P51816 1311 aa16.66■□□□□ 0.26
CLIP1-208ENST00000537004 TRPM1Q7Z4N2 1603 aa16.65■□□□□ 0.26
CLIP1-208ENST00000537004 ATP7BP35670 1465 aa16.65■□□□□ 0.26
CLIP1-208ENST00000537004 DDX10Q13206 875 aaKnown RBP16.65■□□□□ 0.26
CLIP1-208ENST00000537004 CABLES1Q8TDN4 633 aa16.65■□□□□ 0.26
CLIP1-208ENST00000537004 CABP2Q9NPB3 220 aa16.65■□□□□ 0.26
CLIP1-208ENST00000537004 SRPK2P78362 688 aaKnown RBP16.64■□□□□ 0.25
CLIP1-208ENST00000537004 NGDNQ8NEJ9 315 aaKnown RBP16.64■□□□□ 0.25
CLIP1-208ENST00000537004 NGLY1Q96IV0 654 aa16.64■□□□□ 0.25
CLIP1-208ENST00000537004 EIF3AQ14152 1382 aaKnown RBP16.64■□□□□ 0.25
CLIP1-208ENST00000537004 KIF1AQ12756 1690 aa16.64■□□□□ 0.25
CLIP1-208ENST00000537004 CARD11Q9BXL7 1154 aa16.63■□□□□ 0.25
CLIP1-208ENST00000537004 CENPBP07199 599 aaPredicted RBP16.62■□□□□ 0.25
CLIP1-208ENST00000537004 ZNF772Q68DY9 489 aaPredicted RBP16.62■□□□□ 0.25
CLIP1-208ENST00000537004 HSPA5P11021 654 aaKnown RBP16.62■□□□□ 0.25
CLIP1-208ENST00000537004 EIF4G2P78344 907 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLIP1-208ENST00000537004 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
CLIP1-208ENST00000537004 TNS3Q68CZ2 1445 aa16.61■□□□□ 0.25
CLIP1-208ENST00000537004 GPRASP1Q5JY77 1395 aa16.61■□□□□ 0.25
CLIP1-208ENST00000537004 PAK3O75914 559 aaPredicted RBP16.6■□□□□ 0.25
CLIP1-208ENST00000537004 YTHDC1Q96MU7 727 aaKnown RBP16.6■□□□□ 0.25
CLIP1-208ENST00000537004 SBNO1A3KN83 1393 aa16.6■□□□□ 0.25
CLIP1-208ENST00000537004 ACEP12821 1306 aa16.59■□□□□ 0.25
CLIP1-208ENST00000537004 COL22A1Q8NFW1 1626 aaPredicted RBP16.59■□□□□ 0.25
CLIP1-208ENST00000537004 QTRT2Q9H974 415 aaKnown RBP16.58■□□□□ 0.24
CLIP1-208ENST00000537004 HAP1P54257 671 aaPredicted RBP16.57■□□□□ 0.24
CLIP1-208ENST00000537004 USP21Q9UK80 565 aa16.57■□□□□ 0.24
CLIP1-208ENST00000537004 QRICH2Q9H0J4 1663 aa16.57■□□□□ 0.24
CLIP1-208ENST00000537004 RALGAPBQ86X10 1494 aa16.57■□□□□ 0.24
CLIP1-208ENST00000537004 PLEKHG3A1L390 1219 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms