RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-205ENST00000536107 LORP23490 312 aaPredicted RBP8.83□□□□□ -1
YBX3-205ENST00000536107 FUT2Q10981 343 aa8.83□□□□□ -1
YBX3-205ENST00000536107 MSS51Q4VC12 460 aa8.83□□□□□ -1
YBX3-205ENST00000536107 PRDM9Q9NQV7 894 aa8.83□□□□□ -1
YBX3-205ENST00000536107 SLC27A5Q9Y2P5 690 aa8.83□□□□□ -1
YBX3-205ENST00000536107 METTL3Q86U44 580 aaKnown RBP8.82□□□□□ -1
YBX3-205ENST00000536107 ZSCAN1Q8NBB4 408 aa8.82□□□□□ -1
YBX3-205ENST00000536107 CUX2O14529 1486 aa8.82□□□□□ -1
YBX3-205ENST00000536107 TRIM32Q13049 653 aa8.81□□□□□ -1
YBX3-205ENST00000536107 BRICD5Q6PL45 260 aa8.81□□□□□ -1
YBX3-205ENST00000536107 MRGPRX2Q96LB1 330 aa8.81□□□□□ -1
YBX3-205ENST00000536107 NXF1Q9UBU9 619 aaKnown RBP8.81□□□□□ -1
YBX3-205ENST00000536107 NPAS3Q8IXF0 933 aa8.8□□□□□ -1
YBX3-205ENST00000536107 HPS1Q92902 700 aa8.8□□□□□ -1
YBX3-205ENST00000536107 REPIN1Q9BWE0 567 aaKnown RBP8.8□□□□□ -1
YBX3-205ENST00000536107 GMPRP36959 345 aa8.79□□□□□ -1
YBX3-205ENST00000536107 RDH13Q8NBN7 331 aa8.79□□□□□ -1
YBX3-205ENST00000536107 DAXXQ9UER7 740 aaPredicted RBP8.79□□□□□ -1
YBX3-205ENST00000536107 IRF7Q92985 503 aa8.77□□□□□ -1.01
YBX3-205ENST00000536107 UNC13AQ9UPW8 1703 aa8.76□□□□□ -1.01
YBX3-205ENST00000536107 FECHP22830 423 aa8.75□□□□□ -1.01
YBX3-205ENST00000536107 GCGRP47871 477 aa8.75□□□□□ -1.01
YBX3-205ENST00000536107 MMP16P51512 607 aa8.75□□□□□ -1.01
YBX3-205ENST00000536107 RNF19BQ6ZMZ0 732 aa8.75□□□□□ -1.01
YBX3-205ENST00000536107 CFAP44Q96MT7 982 aa8.75□□□□□ -1.01
YBX3-205ENST00000536107 DDX11L8A8MPP1 907 aa8.74□□□□□ -1.01
YBX3-205ENST00000536107 PAXIP1Q6ZW49 1069 aaPredicted RBP8.74□□□□□ -1.01
YBX3-205ENST00000536107 ERCC6Q03468 1493 aa8.73□□□□□ -1.01
YBX3-205ENST00000536107 HIC1Q14526 733 aa8.73□□□□□ -1.01
YBX3-205ENST00000536107 SUZ12Q15022 739 aaKnown RBP8.73□□□□□ -1.01
YBX3-205ENST00000536107 EIF4G1Q04637 1599 aaKnown RBP8.73□□□□□ -1.01
YBX3-205ENST00000536107 SULF1Q8IWU6 871 aa8.72□□□□□ -1.01
YBX3-205ENST00000536107 KCNV2Q8TDN2 545 aa8.72□□□□□ -1.01
YBX3-205ENST00000536107 H3BM21 787 aa8.71□□□□□ -1.02
YBX3-205ENST00000536107 WNT7BP56706 349 aa8.71□□□□□ -1.02
YBX3-205ENST00000536107 GRIPAP1Q4V328 841 aa8.71□□□□□ -1.02
YBX3-205ENST00000536107 RC3H1Q5TC82 1133 aaKnown RBP8.71□□□□□ -1.02
YBX3-205ENST00000536107 Q3C1V9 767 aa8.7□□□□□ -1.02
YBX3-205ENST00000536107 SKOR1P84550 965 aa8.69□□□□□ -1.02
YBX3-205ENST00000536107 DXOO77932 396 aaKnown RBP8.68□□□□□ -1.02
YBX3-205ENST00000536107 ERBB4Q15303 1308 aa8.67□□□□□ -1.02
YBX3-205ENST00000536107 TRIM46Q7Z4K8 759 aa8.67□□□□□ -1.02
YBX3-205ENST00000536107 SHROOM4Q9ULL8 1493 aa8.67□□□□□ -1.02
YBX3-205ENST00000536107 ALDH1A1P00352 501 aa8.66□□□□□ -1.02
YBX3-205ENST00000536107 VEGFBP49765 207 aa8.66□□□□□ -1.02
YBX3-205ENST00000536107 BMP1P13497 986 aa8.65□□□□□ -1.02
YBX3-205ENST00000536107 USB1Q9BQ65 265 aaKnown RBP8.65□□□□□ -1.02
YBX3-205ENST00000536107 GNPATO15228 680 aa8.64□□□□□ -1.03
YBX3-205ENST00000536107 CAPN5O15484 640 aaPredicted RBP8.63□□□□□ -1.03
YBX3-205ENST00000536107 SIAH2O43255 324 aa8.62□□□□□ -1.03
YBX3-205ENST00000536107 CCDC24Q8N4L8 307 aa8.62□□□□□ -1.03
YBX3-205ENST00000536107 NLRP7Q8WX94 980 aa8.62□□□□□ -1.03
YBX3-205ENST00000536107 KCNMA1Q12791 1236 aa8.61□□□□□ -1.03
YBX3-205ENST00000536107 SEMA3EO15041 775 aa8.6□□□□□ -1.03
YBX3-205ENST00000536107 VSIG8P0DPA2 414 aa8.6□□□□□ -1.03
YBX3-205ENST00000536107 PHOX2BQ99453 314 aa8.6□□□□□ -1.03
YBX3-205ENST00000536107 WASF2Q9Y6W5 498 aa8.59□□□□□ -1.03
YBX3-205ENST00000536107 ZFP42Q96MM3 310 aa8.58□□□□□ -1.04
YBX3-205ENST00000536107 GPR37O15354 613 aa8.57□□□□□ -1.04
YBX3-205ENST00000536107 GSK3AP49840 483 aa8.57□□□□□ -1.04
YBX3-205ENST00000536107 EHBP1Q8NDI1 1231 aa8.57□□□□□ -1.04
YBX3-205ENST00000536107 KCTD17Q8N5Z5 321 aa8.56□□□□□ -1.04
YBX3-205ENST00000536107 CD46P15529 392 aa8.55□□□□□ -1.04
YBX3-205ENST00000536107 RBM26Q5T8P6 1007 aaKnown RBP8.55□□□□□ -1.04
YBX3-205ENST00000536107 P3H3Q8IVL6 736 aa8.55□□□□□ -1.04
YBX3-205ENST00000536107 KDM4AO75164 1064 aa8.54□□□□□ -1.04
YBX3-205ENST00000536107 JUNDP17535 347 aa8.53□□□□□ -1.04
YBX3-205ENST00000536107 USP46P62068 366 aa8.53□□□□□ -1.04
YBX3-205ENST00000536107 MYO15BQ96JP2 1530 aa8.53□□□□□ -1.04
YBX3-205ENST00000536107 SCRIBQ14160 1630 aa8.51□□□□□ -1.05
YBX3-205ENST00000536107 TESPA1A2RU30 521 aaPredicted RBP8.5□□□□□ -1.05
YBX3-205ENST00000536107 SCARF1Q14162 830 aa8.5□□□□□ -1.05
YBX3-205ENST00000536107 SMYD5Q6GMV2 418 aa8.5□□□□□ -1.05
YBX3-205ENST00000536107 PTCRAQ6ISU1 281 aaPredicted RBP8.5□□□□□ -1.05
YBX3-205ENST00000536107 MRPL14Q6P1L8 145 aaKnown RBP8.5□□□□□ -1.05
YBX3-205ENST00000536107 TMEM151AQ8N4L1 468 aa8.5□□□□□ -1.05
YBX3-205ENST00000536107 TSHZ2Q9NRE2 1034 aa8.5□□□□□ -1.05
YBX3-205ENST00000536107 SH3BP2P78314 561 aa8.49□□□□□ -1.05
YBX3-205ENST00000536107 HLA-CQ95604 372 aa8.49□□□□□ -1.05
YBX3-205ENST00000536107 NUDT12Q9BQG2 462 aa8.49□□□□□ -1.05
YBX3-205ENST00000536107 HOXA2O43364 376 aa8.47□□□□□ -1.05
YBX3-205ENST00000536107 GDF11O95390 407 aa8.47□□□□□ -1.05
YBX3-205ENST00000536107 RASSF7Q02833 373 aa8.47□□□□□ -1.05
YBX3-205ENST00000536107 MPNDQ8N594 471 aa8.47□□□□□ -1.05
YBX3-205ENST00000536107 PURBQ96QR8 312 aaKnown RBP8.46□□□□□ -1.06
YBX3-205ENST00000536107 PLEKHG3A1L390 1219 aa8.45□□□□□ -1.06
YBX3-205ENST00000536107 SOBPA7XYQ1 873 aa8.45□□□□□ -1.06
YBX3-205ENST00000536107 RNF225M0QZC1 329 aaPredicted RBP8.45□□□□□ -1.06
YBX3-205ENST00000536107 NNTQ13423 1086 aa8.45□□□□□ -1.06
YBX3-205ENST00000536107 RETREG3Q86VR2 466 aa8.45□□□□□ -1.06
YBX3-205ENST00000536107 TIMP2P16035 220 aa8.44□□□□□ -1.06
YBX3-205ENST00000536107 TLL2Q9Y6L7 1015 aa8.44□□□□□ -1.06
YBX3-205ENST00000536107 SYMPKQ92797 1274 aaKnown RBP8.43□□□□□ -1.06
YBX3-205ENST00000536107 ADH1CP00326 375 aa8.42□□□□□ -1.06
YBX3-205ENST00000536107 CCNYL3P0C7X3 344 aa8.42□□□□□ -1.06
YBX3-205ENST00000536107 VARSP26640 1264 aaKnown RBP8.42□□□□□ -1.06
YBX3-205ENST00000536107 GUCA2AQ02747 115 aa8.42□□□□□ -1.06
YBX3-205ENST00000536107 PPFIA3O75145 1194 aa8.41□□□□□ -1.06
YBX3-205ENST00000536107 WDR4P57081 412 aaKnown RBP8.41□□□□□ -1.06
YBX3-205ENST00000536107 KLF16Q9BXK1 252 aaPredicted RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms