RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ZRANB1	Q9UGI0	708 aa		19.02	■□□□□ 0.64
CAPN1-223	ENST00000533079	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	19.02	■□□□□ 0.63
CAPN1-223	ENST00000533079	ROBO2	Q9HCK4	1378 aa		19.01	■□□□□ 0.63
CAPN1-223	ENST00000533079	NPHP3	Q7Z494	1330 aa		18.99	■□□□□ 0.63
CAPN1-223	ENST00000533079	PXDN	Q92626	1479 aa		18.98	■□□□□ 0.63
CAPN1-223	ENST00000533079	VGF	O15240	615 aa	Predicted RBP	18.98	■□□□□ 0.63
CAPN1-223	ENST00000533079	ORAI2	Q96SN7	254 aa		18.98	■□□□□ 0.63
CAPN1-223	ENST00000533079	BCL9L	Q86UU0	1499 aa		18.97	■□□□□ 0.63
CAPN1-223	ENST00000533079	PPL	O60437	1756 aa		18.96	■□□□□ 0.63
CAPN1-223	ENST00000533079	RPGRIP1L	Q68CZ1	1315 aa		18.95	■□□□□ 0.62
CAPN1-223	ENST00000533079	LRPPRC	P42704	1394 aa	Known RBP	18.94	■□□□□ 0.62
CAPN1-223	ENST00000533079	ITGAE	P38570	1179 aa		18.93	■□□□□ 0.62
CAPN1-223	ENST00000533079	KIF1A	Q12756	1690 aa		18.92	■□□□□ 0.62
CAPN1-223	ENST00000533079	BLM	P54132	1417 aa	Predicted RBP	18.91	■□□□□ 0.62
CAPN1-223	ENST00000533079	GJD4	Q96KN9	370 aa	Predicted RBP	18.9	■□□□□ 0.62
CAPN1-223	ENST00000533079	KNDC1	Q76NI1	1749 aa		18.9	■□□□□ 0.62
CAPN1-223	ENST00000533079	TECPR2	O15040	1411 aa		18.9	■□□□□ 0.62
CAPN1-223	ENST00000533079	SLIT2	O94813	1529 aa		18.9	■□□□□ 0.62
CAPN1-223	ENST00000533079	GLI3	P10071	1580 aa		18.89	■□□□□ 0.62
CAPN1-223	ENST00000533079	USP32	Q8NFA0	1604 aa		18.89	■□□□□ 0.62
CAPN1-223	ENST00000533079	NAIP	Q13075	1403 aa		18.89	■□□□□ 0.61
CAPN1-223	ENST00000533079	LRP5	O75197	1615 aa		18.89	■□□□□ 0.61
CAPN1-223	ENST00000533079	ESCO1	Q5FWF5	840 aa		18.88	■□□□□ 0.61
CAPN1-223	ENST00000533079	RALGAPB	Q86X10	1494 aa		18.87	■□□□□ 0.61
CAPN1-223	ENST00000533079	FMN2	Q9NZ56	1722 aa		18.86	■□□□□ 0.61
CAPN1-223	ENST00000533079	CCDC144A	A2RUR9	1427 aa		18.86	■□□□□ 0.61
CAPN1-223	ENST00000533079	NWD2	Q9ULI1	1742 aa		18.84	■□□□□ 0.61
CAPN1-223	ENST00000533079	UNC5CL	Q8IV45	518 aa		18.84	■□□□□ 0.61
CAPN1-223	ENST00000533079	RRBP1	Q9P2E9	1410 aa	Known RBP	18.83	■□□□□ 0.61
CAPN1-223	ENST00000533079	FOXO3	O43524	673 aa		18.83	■□□□□ 0.6
CAPN1-223	ENST00000533079	IFT172	Q9UG01	1749 aa		18.83	■□□□□ 0.6
CAPN1-223	ENST00000533079	PLCH1	Q4KWH8	1693 aa		18.82	■□□□□ 0.6
CAPN1-223	ENST00000533079	BRWD3	Q6RI45	1802 aa		18.81	■□□□□ 0.6
CAPN1-223	ENST00000533079	SPATA31A3	Q5VYP0	1347 aa		18.8	■□□□□ 0.6
CAPN1-223	ENST00000533079	ABCA3	Q99758	1704 aa		18.8	■□□□□ 0.6
CAPN1-223	ENST00000533079	SF3B2	Q13435	895 aa	Known RBP	18.79	■□□□□ 0.6
CAPN1-223	ENST00000533079	ABCC11	Q96J66	1382 aa		18.79	■□□□□ 0.6
CAPN1-223	ENST00000533079	TNS3	Q68CZ2	1445 aa		18.78	■□□□□ 0.6
CAPN1-223	ENST00000533079	XPC	Q01831	940 aa	Predicted RBP	18.78	■□□□□ 0.6
CAPN1-223	ENST00000533079	ANKRD30B	Q9BXX2	1392 aa		18.78	■□□□□ 0.6
CAPN1-223	ENST00000533079	PIK3C2G	O75747	1445 aa		18.76	■□□□□ 0.59
CAPN1-223	ENST00000533079	SLC4A1AP	Q9BWU0	796 aa	Known RBP	18.76	■□□□□ 0.59
CAPN1-223	ENST00000533079	VPS72	Q15906	364 aa		18.75	■□□□□ 0.59
CAPN1-223	ENST00000533079	SPATA31E1	Q6ZUB1	1445 aa		18.74	■□□□□ 0.59
CAPN1-223	ENST00000533079	ADGRF5	Q8IZF2	1346 aa		18.74	■□□□□ 0.59
CAPN1-223	ENST00000533079	ARHGEF10	O15013	1369 aa		18.73	■□□□□ 0.59
CAPN1-223	ENST00000533079	SEPT12	Q8IYM1	358 aa		18.73	■□□□□ 0.59
CAPN1-223	ENST00000533079	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.73	■□□□□ 0.59
CAPN1-223	ENST00000533079	NRXN1	Q9ULB1	1477 aa		18.72	■□□□□ 0.59
CAPN1-223	ENST00000533079	SBNO1	A3KN83	1393 aa		18.72	■□□□□ 0.59
CAPN1-223	ENST00000533079	ONECUT3	O60422	494 aa	Predicted RBP	18.72	■□□□□ 0.59
CAPN1-223	ENST00000533079	WAPL	Q7Z5K2	1190 aa		18.72	■□□□□ 0.59
CAPN1-223	ENST00000533079	NRAP	Q86VF7	1730 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	PLEKHH1	Q9ULM0	1364 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	NUTM2F	A1L443	756 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	HAP1	P54257	671 aa	Predicted RBP	18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	PSME1	Q06323	249 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	KRT28	Q7Z3Y7	464 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	DEFB132	Q7Z7B7	95 aa		18.71	■□□□□ 0.59
CAPN1-223	ENST00000533079	RGPD1	P0DJD0	1748 aa		18.7	■□□□□ 0.58
CAPN1-223	ENST00000533079	SIRT1	Q96EB6	747 aa		18.7	■□□□□ 0.58
CAPN1-223	ENST00000533079	STK26	Q9P289	416 aa		18.7	■□□□□ 0.58
CAPN1-223	ENST00000533079	KRT27	Q7Z3Y8	459 aa		18.69	■□□□□ 0.58
CAPN1-223	ENST00000533079	BAG6	P46379	1132 aa		18.68	■□□□□ 0.58
CAPN1-223	ENST00000533079	ADGRB2	O60241	1585 aa		18.68	■□□□□ 0.58
CAPN1-223	ENST00000533079	PHF8	Q9UPP1	1060 aa		18.67	■□□□□ 0.58
CAPN1-223	ENST00000533079	RGPD8	O14715	1765 aa	Predicted RBP	18.67	■□□□□ 0.58
CAPN1-223	ENST00000533079	ANKAR	Q7Z5J8	1434 aa		18.66	■□□□□ 0.58
CAPN1-223	ENST00000533079	CCDC9	Q9Y3X0	531 aa	Known RBP	18.66	■□□□□ 0.58
CAPN1-223	ENST00000533079	COL14A1	Q05707	1796 aa	Known RBP	18.65	■□□□□ 0.58
CAPN1-223	ENST00000533079	DISP2	A7MBM2	1401 aa		18.65	■□□□□ 0.58
CAPN1-223	ENST00000533079	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.64	■□□□□ 0.57
CAPN1-223	ENST00000533079	DLC1	Q96QB1	1528 aa		18.64	■□□□□ 0.57
CAPN1-223	ENST00000533079	TMEM132E	Q6IEE7	984 aa		18.63	■□□□□ 0.57
CAPN1-223	ENST00000533079	PPARGC1B	Q86YN6	1023 aa	Known RBP	18.63	■□□□□ 0.57
CAPN1-223	ENST00000533079	ALS2	Q96Q42	1657 aa		18.63	■□□□□ 0.57
CAPN1-223	ENST00000533079	RGL3	Q3MIN7	710 aa		18.62	■□□□□ 0.57
CAPN1-223	ENST00000533079	THSD7A	Q9UPZ6	1657 aa		18.62	■□□□□ 0.57
CAPN1-223	ENST00000533079	TNS1	Q9HBL0	1735 aa	Known RBP	18.61	■□□□□ 0.57
CAPN1-223	ENST00000533079	DHX57	Q6P158	1386 aa	Known RBP	18.61	■□□□□ 0.57
CAPN1-223	ENST00000533079	HRC	P23327	699 aa		18.61	■□□□□ 0.57
CAPN1-223	ENST00000533079	CABLES1	Q8TDN4	633 aa		18.61	■□□□□ 0.57
CAPN1-223	ENST00000533079	EIF3A	Q14152	1382 aa	Known RBP	18.6	■□□□□ 0.57
CAPN1-223	ENST00000533079	CRYBG1	Q9Y4K1	1723 aa		18.6	■□□□□ 0.57
CAPN1-223	ENST00000533079		A0A0G2JS52	829 aa		18.59	■□□□□ 0.57
CAPN1-223	ENST00000533079	MYT1	Q01538	1121 aa		18.59	■□□□□ 0.57
CAPN1-223	ENST00000533079	C14orf93	Q9H972	538 aa	Known RBP	18.59	■□□□□ 0.57
CAPN1-223	ENST00000533079	PSD	A5PKW4	1024 aa	Predicted RBP	18.57	■□□□□ 0.56
CAPN1-223	ENST00000533079	FAM83G	A6ND36	823 aa		18.57	■□□□□ 0.56
CAPN1-223	ENST00000533079	FAM98C	Q17RN3	349 aa	Known RBP	18.57	■□□□□ 0.56
CAPN1-223	ENST00000533079	LMOD2	Q6P5Q4	547 aa		18.57	■□□□□ 0.56
CAPN1-223	ENST00000533079	TULP4	Q9NRJ4	1543 aa		18.55	■□□□□ 0.56
CAPN1-223	ENST00000533079	BTG4	Q9NY30	223 aa		18.55	■□□□□ 0.56
CAPN1-223	ENST00000533079	GPRASP1	Q5JY77	1395 aa		18.55	■□□□□ 0.56
CAPN1-223	ENST00000533079	ACIN1	Q9UKV3	1341 aa	Known RBP	18.54	■□□□□ 0.56
CAPN1-223	ENST00000533079	PRAM1	Q96QH2	718 aa		18.54	■□□□□ 0.56
CAPN1-223	ENST00000533079	PARD3	Q8TEW0	1356 aa		18.54	■□□□□ 0.56
CAPN1-223	ENST00000533079	SPATA31A5	Q5VU36	1347 aa		18.53	■□□□□ 0.56
CAPN1-223	ENST00000533079	SPATA31A7	Q8IWB4	1347 aa		18.53	■□□□□ 0.56
CAPN1-223	ENST00000533079	MPHOSPH9	Q99550	1183 aa		18.53	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms