RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ROBO1Q9Y6N7 1651 aa28.54■■■□□ 2.16
CPSF1-209ENST00000532725 TONSLQ96HA7 1378 aa28.53■■■□□ 2.16
CPSF1-209ENST00000532725 BRINP3Q76B58 766 aa28.53■■■□□ 2.16
CPSF1-209ENST00000532725 KIAA1210Q9ULL0 1709 aa28.52■■■□□ 2.16
CPSF1-209ENST00000532725 SAFB2Q14151 953 aaKnown RBP eCLIP28.52■■■□□ 2.16
CPSF1-209ENST00000532725 NBPF8Q3BBV2 869 aa28.52■■■□□ 2.16
CPSF1-209ENST00000532725 CLSPNQ9HAW4 1339 aa28.51■■■□□ 2.15
CPSF1-209ENST00000532725 C1orf167Q5SNV9 1468 aa28.49■■■□□ 2.15
CPSF1-209ENST00000532725 ORAI2Q96SN7 254 aa28.45■■■□□ 2.14
CPSF1-209ENST00000532725 CDC42BPGQ6DT37 1551 aa28.45■■■□□ 2.14
CPSF1-209ENST00000532725 CCER1Q8TC90 406 aaPredicted RBP28.42■■■□□ 2.14
CPSF1-209ENST00000532725 NUTM2FA1L443 756 aa28.41■■■□□ 2.14
CPSF1-209ENST00000532725 MINK1Q8N4C8 1332 aaPredicted RBP28.41■■■□□ 2.14
CPSF1-209ENST00000532725 HIRIP3Q9BW71 556 aaPredicted RBP28.4■■■□□ 2.14
CPSF1-209ENST00000532725 ESCO1Q5FWF5 840 aa28.39■■■□□ 2.14
CPSF1-209ENST00000532725 TIMELESSQ9UNS1 1208 aa28.39■■■□□ 2.14
CPSF1-209ENST00000532725 TRPM1Q7Z4N2 1603 aa28.39■■■□□ 2.13
CPSF1-209ENST00000532725 ROCK2O75116 1388 aaKnown RBP28.38■■■□□ 2.13
CPSF1-209ENST00000532725 DDX17Q92841 729 aaKnown RBP28.38■■■□□ 2.13
CPSF1-209ENST00000532725 AHDC1Q5TGY3 1603 aaPredicted RBP28.36■■■□□ 2.13
CPSF1-209ENST00000532725 ARHGEF28Q8N1W1 1705 aaKnown RBP28.36■■■□□ 2.13
CPSF1-209ENST00000532725 WASLO00401 505 aaPredicted RBP28.36■■■□□ 2.13
CPSF1-209ENST00000532725 GPRASP1Q5JY77 1395 aa28.35■■■□□ 2.13
CPSF1-209ENST00000532725 PHLPP1O60346 1717 aa28.34■■■□□ 2.13
CPSF1-209ENST00000532725 FMN2Q9NZ56 1722 aa28.32■■■□□ 2.12
CPSF1-209ENST00000532725 CENPJQ9HC77 1338 aaPredicted RBP28.32■■■□□ 2.12
CPSF1-209ENST00000532725 ADGRB2O60241 1585 aa28.32■■■□□ 2.12
CPSF1-209ENST00000532725 COL16A1Q07092 1604 aaPredicted RBP28.31■■■□□ 2.12
CPSF1-209ENST00000532725 SOS2Q07890 1332 aaPredicted RBP28.29■■■□□ 2.12
CPSF1-209ENST00000532725 FOXO3O43524 673 aa28.29■■■□□ 2.12
CPSF1-209ENST00000532725 CARD11Q9BXL7 1154 aa28.29■■■□□ 2.12
CPSF1-209ENST00000532725 JCADQ9P266 1359 aa28.28■■■□□ 2.12
CPSF1-209ENST00000532725 LRRC59Q96AG4 307 aaKnown RBP28.28■■■□□ 2.12
CPSF1-209ENST00000532725 CDK19Q9BWU1 502 aa28.28■■■□□ 2.12
CPSF1-209ENST00000532725 NHSL1Q5SYE7 1610 aa28.28■■■□□ 2.12
CPSF1-209ENST00000532725 RALGAPBQ86X10 1494 aa28.27■■■□□ 2.12
CPSF1-209ENST00000532725 PHF8Q9UPP1 1060 aa28.27■■■□□ 2.12
CPSF1-209ENST00000532725 ANKARQ7Z5J8 1434 aa28.26■■■□□ 2.12
CPSF1-209ENST00000532725 PRR36Q9H6K5 1346 aa28.26■■■□□ 2.11
CPSF1-209ENST00000532725 NPHP3Q7Z494 1330 aa28.25■■■□□ 2.11
CPSF1-209ENST00000532725 EIF3AQ14152 1382 aaKnown RBP28.24■■■□□ 2.11
CPSF1-209ENST00000532725 RGPD8O14715 1765 aaPredicted RBP28.22■■■□□ 2.11
CPSF1-209ENST00000532725 NUDT16Q96DE0 195 aaKnown RBP28.22■■■□□ 2.11
CPSF1-209ENST00000532725 USP32Q8NFA0 1604 aa28.21■■■□□ 2.11
CPSF1-209ENST00000532725 TULP4Q9NRJ4 1543 aa28.21■■■□□ 2.11
CPSF1-209ENST00000532725 XPCQ01831 940 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-209ENST00000532725 PMFBP1Q8TBY8 1022 aa28.2■■■□□ 2.1
CPSF1-209ENST00000532725 PXDNQ92626 1479 aa28.17■■■□□ 2.1
CPSF1-209ENST00000532725 KRT28Q7Z3Y7 464 aa28.17■■■□□ 2.1
CPSF1-209ENST00000532725 SPATA31A6Q5VVP1 1343 aa28.17■■■□□ 2.1
CPSF1-209ENST00000532725 DISP3Q9P2K9 1392 aa28.16■■■□□ 2.1
CPSF1-209ENST00000532725 CCDC61Q9Y6R9 512 aa28.16■■■□□ 2.1
CPSF1-209ENST00000532725 MED1Q15648 1581 aaPredicted RBP28.16■■■□□ 2.1
CPSF1-209ENST00000532725 CABP2Q9NPB3 220 aa28.15■■■□□ 2.1
CPSF1-209ENST00000532725 PNPLA6Q8IY17 1366 aa28.14■■■□□ 2.1
CPSF1-209ENST00000532725 KIF1AQ12756 1690 aa28.14■■■□□ 2.1
CPSF1-209ENST00000532725 QRICH2Q9H0J4 1663 aa28.14■■■□□ 2.1
CPSF1-209ENST00000532725 SRPK2P78362 688 aaKnown RBP28.14■■■□□ 2.1
CPSF1-209ENST00000532725 PSME1Q06323 249 aa28.14■■■□□ 2.1
CPSF1-209ENST00000532725 ATP7BP35670 1465 aa28.14■■■□□ 2.09
CPSF1-209ENST00000532725 EVC2Q86UK5 1308 aa28.13■■■□□ 2.09
CPSF1-209ENST00000532725 SHPRHQ149N8 1683 aa28.12■■■□□ 2.09
CPSF1-209ENST00000532725 PLEKHG3A1L390 1219 aa28.11■■■□□ 2.09
CPSF1-209ENST00000532725 SBNO2Q9Y2G9 1366 aa28.1■■■□□ 2.09
CPSF1-209ENST00000532725 NGDNQ8NEJ9 315 aaKnown RBP28.09■■■□□ 2.09
CPSF1-209ENST00000532725 SPATA31A3Q5VYP0 1347 aa28.09■■■□□ 2.09
CPSF1-209ENST00000532725 ST20-MTHFSA0A0A6YYL1 179 aa28.08■■■□□ 2.09
CPSF1-209ENST00000532725 NUTM2BA6NNL0 878 aaPredicted RBP28.07■■■□□ 2.08
CPSF1-209ENST00000532725 NUTM2EB1AL46 878 aaPredicted RBP28.07■■■□□ 2.08
CPSF1-209ENST00000532725 NUTM2AQ8IVF1 878 aaPredicted RBP28.07■■■□□ 2.08
CPSF1-209ENST00000532725 SBNO1A3KN83 1393 aa28.05■■■□□ 2.08
CPSF1-209ENST00000532725 LRP6O75581 1613 aa28.05■■■□□ 2.08
CPSF1-209ENST00000532725 TESK2Q96S53 571 aa28.05■■■□□ 2.08
CPSF1-209ENST00000532725 ACEP12821 1306 aa28.04■■■□□ 2.08
CPSF1-209ENST00000532725 CABP1Q9NZU7 370 aa28.04■■■□□ 2.08
CPSF1-209ENST00000532725 POLR3AO14802 1390 aaPredicted RBP28.03■■■□□ 2.08
CPSF1-209ENST00000532725 PHF23Q9BUL5 403 aaPredicted RBP28.03■■■□□ 2.08
CPSF1-209ENST00000532725 RGS17Q9UGC6 210 aaPredicted RBP28.03■■■□□ 2.08
CPSF1-209ENST00000532725 PPIP5K1Q6PFW1 1433 aa28.01■■■□□ 2.07
CPSF1-209ENST00000532725 USP47Q96K76 1375 aa28■■■□□ 2.07
CPSF1-209ENST00000532725 ITSN1Q15811 1721 aa28■■■□□ 2.07
CPSF1-209ENST00000532725 TOPAZ1Q8N9V7 1692 aa27.99■■■□□ 2.07
CPSF1-209ENST00000532725 TNS3Q68CZ2 1445 aa27.99■■■□□ 2.07
CPSF1-209ENST00000532725 SLC24A1O60721 1099 aa27.98■■■□□ 2.07
CPSF1-209ENST00000532725 MEX3CQ5U5Q3 659 aaKnown RBP27.98■■■□□ 2.07
CPSF1-209ENST00000532725 PUS7Q96PZ0 661 aaKnown RBP27.97■■■□□ 2.07
CPSF1-209ENST00000532725 COL22A1Q8NFW1 1626 aaPredicted RBP27.96■■■□□ 2.07
CPSF1-209ENST00000532725 LMOD2Q6P5Q4 547 aa27.96■■■□□ 2.07
CPSF1-209ENST00000532725 ARHGEF10O15013 1369 aa27.95■■■□□ 2.06
CPSF1-209ENST00000532725 ATAD2Q6PL18 1390 aa27.95■■■□□ 2.06
CPSF1-209ENST00000532725 PAK3O75914 559 aaPredicted RBP27.94■■■□□ 2.06
CPSF1-209ENST00000532725 ADAMTS2O95450 1211 aa27.94■■■□□ 2.06
CPSF1-209ENST00000532725 TRPM3Q9HCF6 1732 aaPredicted RBP27.93■■■□□ 2.06
CPSF1-209ENST00000532725 ILDR2Q71H61 639 aa27.92■■■□□ 2.06
CPSF1-209ENST00000532725 CABLES1Q8TDN4 633 aa27.92■■■□□ 2.06
CPSF1-209ENST00000532725 ZNF692Q9BU19 519 aaPredicted RBP27.9■■■□□ 2.06
CPSF1-209ENST00000532725 C8orf37Q96NL8 207 aa27.89■■■□□ 2.06
CPSF1-209ENST00000532725 POTEAQ6S8J7 498 aa27.88■■■□□ 2.05
CPSF1-209ENST00000532725 TMF1P82094 1093 aa27.87■■■□□ 2.05
CPSF1-209ENST00000532725 NGLY1Q96IV0 654 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms