RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 SPATA31A6Q5VVP1 1343 aa25.12■■□□□ 1.61
PHRF1-204ENST00000532550 RGS17Q9UGC6 210 aaPredicted RBP25.11■■□□□ 1.61
PHRF1-204ENST00000532550 DDX17Q92841 729 aaKnown RBP25.1■■□□□ 1.61
PHRF1-204ENST00000532550 LAMC1P11047 1609 aa25.08■■□□□ 1.6
PHRF1-204ENST00000532550 PLEKHH1Q9ULM0 1364 aa25.07■■□□□ 1.6
PHRF1-204ENST00000532550 KNDC1Q76NI1 1749 aa25.07■■□□□ 1.6
PHRF1-204ENST00000532550 ESCO1Q5FWF5 840 aa25.07■■□□□ 1.6
PHRF1-204ENST00000532550 MEX3CQ5U5Q3 659 aaKnown RBP25.07■■□□□ 1.6
PHRF1-204ENST00000532550 NHSL1Q5SYE7 1610 aa25.06■■□□□ 1.6
PHRF1-204ENST00000532550 NUTM2FA1L443 756 aa25.04■■□□□ 1.6
PHRF1-204ENST00000532550 NUTM2BA6NNL0 878 aaPredicted RBP25.04■■□□□ 1.6
PHRF1-204ENST00000532550 NUTM2EB1AL46 878 aaPredicted RBP25.04■■□□□ 1.6
PHRF1-204ENST00000532550 NUTM2AQ8IVF1 878 aaPredicted RBP25.04■■□□□ 1.6
PHRF1-204ENST00000532550 POGKQ9P215 609 aa25.04■■□□□ 1.6
PHRF1-204ENST00000532550 CDC42BPGQ6DT37 1551 aa25.03■■□□□ 1.6
PHRF1-204ENST00000532550 PRAM1Q96QH2 718 aa25.03■■□□□ 1.6
PHRF1-204ENST00000532550 SHPRHQ149N8 1683 aa25.03■■□□□ 1.6
PHRF1-204ENST00000532550 SAFB2Q14151 953 aaKnown RBP eCLIP25.02■■□□□ 1.6
PHRF1-204ENST00000532550 TRAK1Q9UPV9 953 aa25.01■■□□□ 1.59
PHRF1-204ENST00000532550 POTEAQ6S8J7 498 aa25■■□□□ 1.59
PHRF1-204ENST00000532550 SOS2Q07890 1332 aaPredicted RBP25■■□□□ 1.59
PHRF1-204ENST00000532550 NPHP3Q7Z494 1330 aa24.98■■□□□ 1.59
PHRF1-204ENST00000532550 LRP6O75581 1613 aa24.97■■□□□ 1.59
PHRF1-204ENST00000532550 FOXO3O43524 673 aa24.97■■□□□ 1.59
PHRF1-204ENST00000532550 PNPLA6Q8IY17 1366 aa24.95■■□□□ 1.59
PHRF1-204ENST00000532550 ADGRB1O14514 1584 aa24.95■■□□□ 1.58
PHRF1-204ENST00000532550 DLC1Q96QB1 1528 aa24.95■■□□□ 1.58
PHRF1-204ENST00000532550 ZNF772Q68DY9 489 aaPredicted RBP24.94■■□□□ 1.58
PHRF1-204ENST00000532550 FMN2Q9NZ56 1722 aa24.92■■□□□ 1.58
PHRF1-204ENST00000532550 XPCQ01831 940 aaPredicted RBP24.91■■□□□ 1.58
PHRF1-204ENST00000532550 SIN3AQ96ST3 1273 aa24.89■■□□□ 1.58
PHRF1-204ENST00000532550 HIRIP3Q9BW71 556 aaPredicted RBP24.89■■□□□ 1.58
PHRF1-204ENST00000532550 PHF8Q9UPP1 1060 aa24.89■■□□□ 1.58
PHRF1-204ENST00000532550 MINK1Q8N4C8 1332 aaPredicted RBP24.88■■□□□ 1.57
PHRF1-204ENST00000532550 ADAMTS2O95450 1211 aa24.87■■□□□ 1.57
PHRF1-204ENST00000532550 TRIM26Q12899 539 aaPredicted RBP24.87■■□□□ 1.57
PHRF1-204ENST00000532550 NEUROD1Q13562 356 aa24.87■■□□□ 1.57
PHRF1-204ENST00000532550 C8orf37Q96NL8 207 aa24.87■■□□□ 1.57
PHRF1-204ENST00000532550 KRT28Q7Z3Y7 464 aa24.86■■□□□ 1.57
PHRF1-204ENST00000532550 AFF2P51816 1311 aa24.86■■□□□ 1.57
PHRF1-204ENST00000532550 L3MBTL2Q969R5 705 aa24.85■■□□□ 1.57
PHRF1-204ENST00000532550 RGPD8O14715 1765 aaPredicted RBP24.85■■□□□ 1.57
PHRF1-204ENST00000532550 PXDNQ92626 1479 aa24.84■■□□□ 1.57
PHRF1-204ENST00000532550 PSME1Q06323 249 aa24.84■■□□□ 1.57
PHRF1-204ENST00000532550 NGLY1Q96IV0 654 aa24.84■■□□□ 1.57
PHRF1-204ENST00000532550 WASLO00401 505 aaPredicted RBP24.83■■□□□ 1.57
PHRF1-204ENST00000532550 NBPF1Q3BBV0 1214 aa24.83■■□□□ 1.57
PHRF1-204ENST00000532550 KIF1AQ12756 1690 aa24.82■■□□□ 1.56
PHRF1-204ENST00000532550 PMFBP1Q8TBY8 1022 aa24.81■■□□□ 1.56
PHRF1-204ENST00000532550 KIAA1210Q9ULL0 1709 aa24.81■■□□□ 1.56
PHRF1-204ENST00000532550 EIF3AQ14152 1382 aaKnown RBP24.8■■□□□ 1.56
PHRF1-204ENST00000532550 ANKARQ7Z5J8 1434 aa24.8■■□□□ 1.56
PHRF1-204ENST00000532550 RXRBP28702 533 aa24.8■■□□□ 1.56
PHRF1-204ENST00000532550 SPATA31A3Q5VYP0 1347 aa24.8■■□□□ 1.56
PHRF1-204ENST00000532550 ADGRB2O60241 1585 aa24.79■■□□□ 1.56
PHRF1-204ENST00000532550 QTRT2Q9H974 415 aaKnown RBP24.77■■□□□ 1.56
PHRF1-204ENST00000532550 COL22A1Q8NFW1 1626 aaPredicted RBP24.76■■□□□ 1.55
PHRF1-204ENST00000532550 ARHGEF28Q8N1W1 1705 aaKnown RBP24.76■■□□□ 1.55
PHRF1-204ENST00000532550 LMOD2Q6P5Q4 547 aa24.75■■□□□ 1.55
PHRF1-204ENST00000532550 CDK19Q9BWU1 502 aa24.74■■□□□ 1.55
PHRF1-204ENST00000532550 PRR36Q9H6K5 1346 aa24.74■■□□□ 1.55
PHRF1-204ENST00000532550 USP32Q8NFA0 1604 aa24.73■■□□□ 1.55
PHRF1-204ENST00000532550 USP21Q9UK80 565 aa24.73■■□□□ 1.55
PHRF1-204ENST00000532550 NGDNQ8NEJ9 315 aaKnown RBP24.72■■□□□ 1.55
PHRF1-204ENST00000532550 NUDT16Q96DE0 195 aaKnown RBP24.72■■□□□ 1.55
PHRF1-204ENST00000532550 TULP4Q9NRJ4 1543 aa24.71■■□□□ 1.55
PHRF1-204ENST00000532550 SBNO1A3KN83 1393 aa24.71■■□□□ 1.55
PHRF1-204ENST00000532550 GPRASP1Q5JY77 1395 aa24.71■■□□□ 1.55
PHRF1-204ENST00000532550 HAP1P54257 671 aaPredicted RBP24.71■■□□□ 1.55
PHRF1-204ENST00000532550 FNBP4Q8N3X1 1017 aaPredicted RBP24.71■■□□□ 1.55
PHRF1-204ENST00000532550 RBM6P78332 1123 aaKnown RBP24.7■■□□□ 1.54
PHRF1-204ENST00000532550 TNS3Q68CZ2 1445 aa24.69■■□□□ 1.54
PHRF1-204ENST00000532550 CENPJQ9HC77 1338 aaPredicted RBP24.69■■□□□ 1.54
PHRF1-204ENST00000532550 PLEKHG5O94827 1062 aa24.68■■□□□ 1.54
PHRF1-204ENST00000532550 TRPC5Q9UL62 973 aaPredicted RBP24.67■■□□□ 1.54
PHRF1-204ENST00000532550 ARHGEF10O15013 1369 aa24.67■■□□□ 1.54
PHRF1-204ENST00000532550 CABLES1Q8TDN4 633 aa24.66■■□□□ 1.54
PHRF1-204ENST00000532550 CCDC61Q9Y6R9 512 aa24.65■■□□□ 1.54
PHRF1-204ENST00000532550 PAK3O75914 559 aaPredicted RBP24.64■■□□□ 1.54
PHRF1-204ENST00000532550 SRPK2P78362 688 aaKnown RBP24.63■■□□□ 1.53
PHRF1-204ENST00000532550 ROCK2O75116 1388 aaKnown RBP24.63■■□□□ 1.53
PHRF1-204ENST00000532550 MARF1Q9Y4F3 1742 aaKnown RBP24.62■■□□□ 1.53
PHRF1-204ENST00000532550 CDK12Q9NYV4 1490 aaPredicted RBP24.62■■□□□ 1.53
PHRF1-204ENST00000532550 TONSLQ96HA7 1378 aa24.61■■□□□ 1.53
PHRF1-204ENST00000532550 ATP7BP35670 1465 aa24.61■■□□□ 1.53
PHRF1-204ENST00000532550 ITSN1Q15811 1721 aa24.61■■□□□ 1.53
PHRF1-204ENST00000532550 NBPF8Q3BBV2 869 aa24.6■■□□□ 1.53
PHRF1-204ENST00000532550 TRPM1Q7Z4N2 1603 aa24.6■■□□□ 1.53
PHRF1-204ENST00000532550 PLEKHG3A1L390 1219 aa24.59■■□□□ 1.53
PHRF1-204ENST00000532550 CABP2Q9NPB3 220 aa24.59■■□□□ 1.53
PHRF1-204ENST00000532550 ACEP12821 1306 aa24.58■■□□□ 1.52
PHRF1-204ENST00000532550 BCL9LQ86UU0 1499 aa24.58■■□□□ 1.52
PHRF1-204ENST00000532550 UNC5CLQ8IV45 518 aa24.57■■□□□ 1.52
PHRF1-204ENST00000532550 TRPM3Q9HCF6 1732 aaPredicted RBP24.56■■□□□ 1.52
PHRF1-204ENST00000532550 ATRNO75882 1429 aa24.56■■□□□ 1.52
PHRF1-204ENST00000532550 QRICH2Q9H0J4 1663 aa24.54■■□□□ 1.52
PHRF1-204ENST00000532550 GJD4Q96KN9 370 aaPredicted RBP24.54■■□□□ 1.52
PHRF1-204ENST00000532550 EVC2Q86UK5 1308 aa24.54■■□□□ 1.52
PHRF1-204ENST00000532550 POLR3AO14802 1390 aaPredicted RBP24.54■■□□□ 1.52
PHRF1-204ENST00000532550 CARD11Q9BXL7 1154 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms