RNA–Protein interactions for RNA: ENST00000529994.1

SF3B2-208, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 1,004 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-208ENST00000529994 ESCO1Q5FWF5 840 aa17.2■□□□□ 0.34
SF3B2-208ENST00000529994 MARF1Q9Y4F3 1742 aaKnown RBP17.18■□□□□ 0.34
SF3B2-208ENST00000529994 MYOM2P54296 1465 aa17.18■□□□□ 0.34
SF3B2-208ENST00000529994 BCL9LQ86UU0 1499 aa17.18■□□□□ 0.34
SF3B2-208ENST00000529994 NUTM2FA1L443 756 aa17.17■□□□□ 0.34
SF3B2-208ENST00000529994 HFM1A2PYH4 1435 aa17.17■□□□□ 0.34
SF3B2-208ENST00000529994 FOXO3O43524 673 aa17.17■□□□□ 0.34
SF3B2-208ENST00000529994 PPLO60437 1756 aa17.16■□□□□ 0.34
SF3B2-208ENST00000529994 FOXD1Q16676 465 aa17.16■□□□□ 0.34
SF3B2-208ENST00000529994 NPHP3Q7Z494 1330 aa17.16■□□□□ 0.34
SF3B2-208ENST00000529994 GJD4Q96KN9 370 aaPredicted RBP17.15■□□□□ 0.34
SF3B2-208ENST00000529994 PXDNQ92626 1479 aa17.15■□□□□ 0.34
SF3B2-208ENST00000529994 PRAG1Q86YV5 1406 aa17.13■□□□□ 0.33
SF3B2-208ENST00000529994 CDC42BPGQ6DT37 1551 aa17.13■□□□□ 0.33
SF3B2-208ENST00000529994 RPGRIP1LQ68CZ1 1315 aa17.13■□□□□ 0.33
SF3B2-208ENST00000529994 NAIPQ13075 1403 aa17.13■□□□□ 0.33
SF3B2-208ENST00000529994 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
SF3B2-208ENST00000529994 STK26Q9P289 416 aa17.12■□□□□ 0.33
SF3B2-208ENST00000529994 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
SF3B2-208ENST00000529994 BRWD3Q6RI45 1802 aa17.1■□□□□ 0.33
SF3B2-208ENST00000529994 SLC4A1APQ9BWU0 796 aaKnown RBP17.1■□□□□ 0.33
SF3B2-208ENST00000529994 PLEKHG5O94827 1062 aa17.09■□□□□ 0.33
SF3B2-208ENST00000529994 GLI3P10071 1580 aa17.09■□□□□ 0.33
SF3B2-208ENST00000529994 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.09■□□□□ 0.33
SF3B2-208ENST00000529994 RALGAPBQ86X10 1494 aa17.08■□□□□ 0.32
SF3B2-208ENST00000529994 ADGRF5Q8IZF2 1346 aa17.08■□□□□ 0.32
SF3B2-208ENST00000529994 DEFB132Q7Z7B7 95 aa17.08■□□□□ 0.32
SF3B2-208ENST00000529994 UNC5CLQ8IV45 518 aa17.08■□□□□ 0.32
SF3B2-208ENST00000529994 LRPPRCP42704 1394 aaKnown RBP17.07■□□□□ 0.32
SF3B2-208ENST00000529994 BLMP54132 1417 aaPredicted RBP17.06■□□□□ 0.32
SF3B2-208ENST00000529994 PLEKHH1Q9ULM0 1364 aa17.06■□□□□ 0.32
SF3B2-208ENST00000529994 RGL3Q3MIN7 710 aa17.06■□□□□ 0.32
SF3B2-208ENST00000529994 TMEM132EQ6IEE7 984 aa17.06■□□□□ 0.32
SF3B2-208ENST00000529994 SLIT2O94813 1529 aa17.06■□□□□ 0.32
SF3B2-208ENST00000529994 SPATA31A3Q5VYP0 1347 aa17.05■□□□□ 0.32
SF3B2-208ENST00000529994 RGPD8O14715 1765 aaPredicted RBP17.04■□□□□ 0.32
SF3B2-208ENST00000529994 FMN2Q9NZ56 1722 aa17.04■□□□□ 0.32
SF3B2-208ENST00000529994 RRBP1Q9P2E9 1410 aaKnown RBP17.04■□□□□ 0.32
SF3B2-208ENST00000529994 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
SF3B2-208ENST00000529994 HAP1P54257 671 aaPredicted RBP17.03■□□□□ 0.32
SF3B2-208ENST00000529994 KRT28Q7Z3Y7 464 aa17.03■□□□□ 0.32
SF3B2-208ENST00000529994 SEPT12Q8IYM1 358 aa17.03■□□□□ 0.32
SF3B2-208ENST00000529994 CABLES1Q8TDN4 633 aa17.03■□□□□ 0.32
SF3B2-208ENST00000529994 SF3B2Q13435 895 aaKnown RBP17.02■□□□□ 0.32
SF3B2-208ENST00000529994 CCDC9Q9Y3X0 531 aaKnown RBP17.02■□□□□ 0.32
SF3B2-208ENST00000529994 TECPR2O15040 1411 aa17.02■□□□□ 0.31
SF3B2-208ENST00000529994 KIF1AQ12756 1690 aa17.01■□□□□ 0.31
SF3B2-208ENST00000529994 CCDC144AA2RUR9 1427 aa17■□□□□ 0.31
SF3B2-208ENST00000529994 KNDC1Q76NI1 1749 aa17■□□□□ 0.31
SF3B2-208ENST00000529994 PLCH1Q4KWH8 1693 aa17■□□□□ 0.31
SF3B2-208ENST00000529994 ABCC11Q96J66 1382 aa17■□□□□ 0.31
SF3B2-208ENST00000529994 IFT172Q9UG01 1749 aa16.99■□□□□ 0.31
SF3B2-208ENST00000529994 LMOD2Q6P5Q4 547 aa16.99■□□□□ 0.31
SF3B2-208ENST00000529994 VPS72Q15906 364 aa16.98■□□□□ 0.31
SF3B2-208ENST00000529994 TNS3Q68CZ2 1445 aa16.97■□□□□ 0.31
SF3B2-208ENST00000529994 A0A0G2JS52 829 aa16.97■□□□□ 0.31
SF3B2-208ENST00000529994 MYT1Q01538 1121 aa16.97■□□□□ 0.31
SF3B2-208ENST00000529994 PHF8Q9UPP1 1060 aa16.97■□□□□ 0.31
SF3B2-208ENST00000529994 SPATA31E1Q6ZUB1 1445 aa16.96■□□□□ 0.31
SF3B2-208ENST00000529994 YTHDC2Q9H6S0 1430 aaKnown RBP16.96■□□□□ 0.31
SF3B2-208ENST00000529994 PSDA5PKW4 1024 aaPredicted RBP16.96■□□□□ 0.31
SF3B2-208ENST00000529994 KRT27Q7Z3Y8 459 aa16.96■□□□□ 0.31
SF3B2-208ENST00000529994 ANKRD30BQ9BXX2 1392 aa16.96■□□□□ 0.31
SF3B2-208ENST00000529994 ABCA3Q99758 1704 aa16.96■□□□□ 0.3
SF3B2-208ENST00000529994 NWD2Q9ULI1 1742 aa16.96■□□□□ 0.3
SF3B2-208ENST00000529994 PSME1Q06323 249 aa16.95■□□□□ 0.3
SF3B2-208ENST00000529994 SAFB2Q14151 953 aaKnown RBP eCLIP16.95■□□□□ 0.3
SF3B2-208ENST00000529994 PIK3C2GO75747 1445 aa16.95■□□□□ 0.3
SF3B2-208ENST00000529994 LRP5O75197 1615 aa16.93■□□□□ 0.3
SF3B2-208ENST00000529994 FAM83GA6ND36 823 aa16.93■□□□□ 0.3
SF3B2-208ENST00000529994 ONECUT3O60422 494 aaPredicted RBP16.93■□□□□ 0.3
SF3B2-208ENST00000529994 PMFBP1Q8TBY8 1022 aa16.92■□□□□ 0.3
SF3B2-208ENST00000529994 FAM98CQ17RN3 349 aaKnown RBP16.91■□□□□ 0.3
SF3B2-208ENST00000529994 NRXN1Q9ULB1 1477 aa16.91■□□□□ 0.3
SF3B2-208ENST00000529994 SBNO1A3KN83 1393 aa16.9■□□□□ 0.3
SF3B2-208ENST00000529994 BAG6P46379 1132 aa16.9■□□□□ 0.3
SF3B2-208ENST00000529994 FAM182BQ5T319 152 aa16.9■□□□□ 0.3
SF3B2-208ENST00000529994 MPHOSPH9Q99550 1183 aa16.9■□□□□ 0.3
SF3B2-208ENST00000529994 ARHGEF10O15013 1369 aa16.89■□□□□ 0.3
SF3B2-208ENST00000529994 HRCP23327 699 aa16.89■□□□□ 0.29
SF3B2-208ENST00000529994 CFAP70Q5T0N1 1121 aa16.89■□□□□ 0.29
SF3B2-208ENST00000529994 PRAM1Q96QH2 718 aa16.89■□□□□ 0.29
SF3B2-208ENST00000529994 NRAPQ86VF7 1730 aa16.88■□□□□ 0.29
SF3B2-208ENST00000529994 EN1Q05925 392 aaPredicted RBP16.88■□□□□ 0.29
SF3B2-208ENST00000529994 SIRT1Q96EB6 747 aa16.88■□□□□ 0.29
SF3B2-208ENST00000529994 C14orf93Q9H972 538 aaKnown RBP16.88■□□□□ 0.29
SF3B2-208ENST00000529994 BTG4Q9NY30 223 aa16.88■□□□□ 0.29
SF3B2-208ENST00000529994 DHX57Q6P158 1386 aaKnown RBP16.88■□□□□ 0.29
SF3B2-208ENST00000529994 POGKQ9P215 609 aa16.85■□□□□ 0.29
SF3B2-208ENST00000529994 RGPD1P0DJD0 1748 aa16.84■□□□□ 0.29
SF3B2-208ENST00000529994 TRPM3Q9HCF6 1732 aaPredicted RBP16.84■□□□□ 0.29
SF3B2-208ENST00000529994 R3HDM1Q15032 1099 aaKnown RBP16.84■□□□□ 0.29
SF3B2-208ENST00000529994 HIRIP3Q9BW71 556 aaPredicted RBP16.84■□□□□ 0.29
SF3B2-208ENST00000529994 COL14A1Q05707 1796 aaKnown RBP16.83■□□□□ 0.28
SF3B2-208ENST00000529994 ALS2Q96Q42 1657 aa16.81■□□□□ 0.28
SF3B2-208ENST00000529994 ANKARQ7Z5J8 1434 aa16.81■□□□□ 0.28
SF3B2-208ENST00000529994 GPRASP1Q5JY77 1395 aa16.8■□□□□ 0.28
SF3B2-208ENST00000529994 SPATA31A5Q5VU36 1347 aa16.8■□□□□ 0.28
SF3B2-208ENST00000529994 SPATA31A7Q8IWB4 1347 aa16.8■□□□□ 0.28
SF3B2-208ENST00000529994 MINK1Q8N4C8 1332 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms