RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ROBO2Q9HCK4 1378 aa15.94■□□□□ 0.14
CPSF1-203ENST00000527916 MYOM2P54296 1465 aa15.94■□□□□ 0.14
CPSF1-203ENST00000527916 BCL9LQ86UU0 1499 aa15.94■□□□□ 0.14
CPSF1-203ENST00000527916 ITGAEP38570 1179 aa15.93■□□□□ 0.14
CPSF1-203ENST00000527916 SF3B2Q13435 895 aaKnown RBP15.93■□□□□ 0.14
CPSF1-203ENST00000527916 ESCO1Q5FWF5 840 aa15.93■□□□□ 0.14
CPSF1-203ENST00000527916 HFM1A2PYH4 1435 aa15.93■□□□□ 0.14
CPSF1-203ENST00000527916 BLMP54132 1417 aaPredicted RBP15.93■□□□□ 0.14
CPSF1-203ENST00000527916 LRPPRCP42704 1394 aaKnown RBP15.91■□□□□ 0.14
CPSF1-203ENST00000527916 KIF1BO60333 1816 aa15.9■□□□□ 0.14
CPSF1-203ENST00000527916 UNC5CLQ8IV45 518 aa15.9■□□□□ 0.14
CPSF1-203ENST00000527916 PRAG1Q86YV5 1406 aa15.9■□□□□ 0.14
CPSF1-203ENST00000527916 MARF1Q9Y4F3 1742 aaKnown RBP15.89■□□□□ 0.13
CPSF1-203ENST00000527916 FOXO3O43524 673 aa15.89■□□□□ 0.13
CPSF1-203ENST00000527916 CLTCL1P53675 1640 aa15.89■□□□□ 0.13
CPSF1-203ENST00000527916 PXDNQ92626 1479 aa15.87■□□□□ 0.13
CPSF1-203ENST00000527916 XPCQ01831 940 aaPredicted RBP15.87■□□□□ 0.13
CPSF1-203ENST00000527916 RPGRIP1LQ68CZ1 1315 aa15.87■□□□□ 0.13
CPSF1-203ENST00000527916 RALGAPBQ86X10 1494 aa15.86■□□□□ 0.13
CPSF1-203ENST00000527916 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.86■□□□□ 0.13
CPSF1-203ENST00000527916 DEFB132Q7Z7B7 95 aa15.86■□□□□ 0.13
CPSF1-203ENST00000527916 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
CPSF1-203ENST00000527916 HAP1P54257 671 aaPredicted RBP15.83■□□□□ 0.12
CPSF1-203ENST00000527916 SEPT12Q8IYM1 358 aa15.83■□□□□ 0.12
CPSF1-203ENST00000527916 NAIPQ13075 1403 aa15.83■□□□□ 0.12
CPSF1-203ENST00000527916 SLIT2O94813 1529 aa15.83■□□□□ 0.12
CPSF1-203ENST00000527916 GLI3P10071 1580 aa15.83■□□□□ 0.12
CPSF1-203ENST00000527916 LRP5O75197 1615 aa15.83■□□□□ 0.12
CPSF1-203ENST00000527916 SPATA31A3Q5VYP0 1347 aa15.81■□□□□ 0.12
CPSF1-203ENST00000527916 BRWD3Q6RI45 1802 aa15.8■□□□□ 0.12
CPSF1-203ENST00000527916 NUTM2FA1L443 756 aa15.8■□□□□ 0.12
CPSF1-203ENST00000527916 VPS72Q15906 364 aa15.8■□□□□ 0.12
CPSF1-203ENST00000527916 KRT27Q7Z3Y8 459 aa15.8■□□□□ 0.12
CPSF1-203ENST00000527916 CCDC9Q9Y3X0 531 aaKnown RBP15.8■□□□□ 0.12
CPSF1-203ENST00000527916 CCDC144AA2RUR9 1427 aa15.79■□□□□ 0.12
CPSF1-203ENST00000527916 BAG6P46379 1132 aa15.79■□□□□ 0.12
CPSF1-203ENST00000527916 ONECUT3O60422 494 aaPredicted RBP15.78■□□□□ 0.12
CPSF1-203ENST00000527916 STK26Q9P289 416 aa15.78■□□□□ 0.12
CPSF1-203ENST00000527916 USP32Q8NFA0 1604 aa15.77■□□□□ 0.12
CPSF1-203ENST00000527916 PSME1Q06323 249 aa15.77■□□□□ 0.12
CPSF1-203ENST00000527916 KRT28Q7Z3Y7 464 aa15.77■□□□□ 0.12
CPSF1-203ENST00000527916 A0A0G2JS52 829 aa15.76■□□□□ 0.11
CPSF1-203ENST00000527916 PSDA5PKW4 1024 aaPredicted RBP15.76■□□□□ 0.11
CPSF1-203ENST00000527916 HRCP23327 699 aa15.76■□□□□ 0.11
CPSF1-203ENST00000527916 MYT1Q01538 1121 aa15.76■□□□□ 0.11
CPSF1-203ENST00000527916 WAPLQ7Z5K2 1190 aa15.76■□□□□ 0.11
CPSF1-203ENST00000527916 PPLO60437 1756 aa15.76■□□□□ 0.11
CPSF1-203ENST00000527916 KIF1AQ12756 1690 aa15.74■□□□□ 0.11
CPSF1-203ENST00000527916 TECPR2O15040 1411 aa15.74■□□□□ 0.11
CPSF1-203ENST00000527916 NWD2Q9ULI1 1742 aa15.73■□□□□ 0.11
CPSF1-203ENST00000527916 ABCC11Q96J66 1382 aa15.73■□□□□ 0.11
CPSF1-203ENST00000527916 TNS3Q68CZ2 1445 aa15.72■□□□□ 0.11
CPSF1-203ENST00000527916 LMOD2Q6P5Q4 547 aa15.72■□□□□ 0.11
CPSF1-203ENST00000527916 CABLES1Q8TDN4 633 aa15.72■□□□□ 0.11
CPSF1-203ENST00000527916 SLC4A1APQ9BWU0 796 aaKnown RBP15.72■□□□□ 0.11
CPSF1-203ENST00000527916 PLEKHG5O94827 1062 aa15.71■□□□□ 0.11
CPSF1-203ENST00000527916 PHF8Q9UPP1 1060 aa15.71■□□□□ 0.11
CPSF1-203ENST00000527916 ARHGEF10O15013 1369 aa15.71■□□□□ 0.11
CPSF1-203ENST00000527916 FMN2Q9NZ56 1722 aa15.71■□□□□ 0.1
CPSF1-203ENST00000527916 ADGRF5Q8IZF2 1346 aa15.7■□□□□ 0.1
CPSF1-203ENST00000527916 PLCH1Q4KWH8 1693 aa15.7■□□□□ 0.1
CPSF1-203ENST00000527916 SBNO1A3KN83 1393 aa15.69■□□□□ 0.1
CPSF1-203ENST00000527916 ANKRD30BQ9BXX2 1392 aa15.69■□□□□ 0.1
CPSF1-203ENST00000527916 PLEKHH1Q9ULM0 1364 aa15.69■□□□□ 0.1
CPSF1-203ENST00000527916 ACIN1Q9UKV3 1341 aaKnown RBP15.68■□□□□ 0.1
CPSF1-203ENST00000527916 FAM83GA6ND36 823 aa15.68■□□□□ 0.1
CPSF1-203ENST00000527916 EN1Q05925 392 aaPredicted RBP15.68■□□□□ 0.1
CPSF1-203ENST00000527916 FAM98CQ17RN3 349 aaKnown RBP15.68■□□□□ 0.1
CPSF1-203ENST00000527916 TMEM132EQ6IEE7 984 aa15.68■□□□□ 0.1
CPSF1-203ENST00000527916 R3HDM1Q15032 1099 aaKnown RBP15.67■□□□□ 0.1
CPSF1-203ENST00000527916 RGL3Q3MIN7 710 aa15.67■□□□□ 0.1
CPSF1-203ENST00000527916 SIRT1Q96EB6 747 aa15.67■□□□□ 0.1
CPSF1-203ENST00000527916 KNDC1Q76NI1 1749 aa15.67■□□□□ 0.1
CPSF1-203ENST00000527916 BTG4Q9NY30 223 aa15.65■□□□□ 0.1
CPSF1-203ENST00000527916 YTHDC2Q9H6S0 1430 aaKnown RBP15.65■□□□□ 0.1
CPSF1-203ENST00000527916 RGPD1P0DJD0 1748 aa15.65■□□□□ 0.1
CPSF1-203ENST00000527916 NRXN1Q9ULB1 1477 aa15.64■□□□□ 0.09
CPSF1-203ENST00000527916 RGPD8O14715 1765 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-203ENST00000527916 IFT172Q9UG01 1749 aa15.63■□□□□ 0.09
CPSF1-203ENST00000527916 DISP2A7MBM2 1401 aa15.62■□□□□ 0.09
CPSF1-203ENST00000527916 ABCA3Q99758 1704 aa15.62■□□□□ 0.09
CPSF1-203ENST00000527916 PIK3C2GO75747 1445 aa15.61■□□□□ 0.09
CPSF1-203ENST00000527916 FAM182BQ5T319 152 aa15.61■□□□□ 0.09
CPSF1-203ENST00000527916 SPATA31E1Q6ZUB1 1445 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 YY1P25490 414 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 PMFBP1Q8TBY8 1022 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 MPHOSPH9Q99550 1183 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 SPATA31A5Q5VU36 1347 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 SPATA31A7Q8IWB4 1347 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 DHX57Q6P158 1386 aaKnown RBP15.6■□□□□ 0.09
CPSF1-203ENST00000527916 NRAPQ86VF7 1730 aa15.6■□□□□ 0.09
CPSF1-203ENST00000527916 EZH2Q15910 746 aaKnown RBP15.59■□□□□ 0.09
CPSF1-203ENST00000527916 GPRASP1Q5JY77 1395 aa15.59■□□□□ 0.09
CPSF1-203ENST00000527916 COL14A1Q05707 1796 aaKnown RBP15.59■□□□□ 0.09
CPSF1-203ENST00000527916 SAFB2Q14151 953 aaKnown RBP eCLIP15.58■□□□□ 0.08
CPSF1-203ENST00000527916 FAM196AQ6ZSG2 479 aa15.58■□□□□ 0.08
CPSF1-203ENST00000527916 PRAM1Q96QH2 718 aa15.58■□□□□ 0.08
CPSF1-203ENST00000527916 C14orf93Q9H972 538 aaKnown RBP15.58■□□□□ 0.08
CPSF1-203ENST00000527916 POGKQ9P215 609 aa15.58■□□□□ 0.08
CPSF1-203ENST00000527916 PARD3Q8TEW0 1356 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms