RNA–Protein interactions for RNA: ENST00000527125.1

SCN3B-203, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

TSL 3

Gene SCN3B, Length 3,289 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-203ENST00000527125 TRAPPC8Q9Y2L5 1435 aa12.03□□□□□ -0.48
SCN3B-203ENST00000527125 MAPK8IP3Q9UPT6 1336 aa12.03□□□□□ -0.48
SCN3B-203ENST00000527125 RGL3Q3MIN7 710 aa12.02□□□□□ -0.49
SCN3B-203ENST00000527125 CARD14Q9BXL6 1004 aa12.02□□□□□ -0.49
SCN3B-203ENST00000527125 TBC1D32Q96NH3 1257 aa12.01□□□□□ -0.49
SCN3B-203ENST00000527125 ZNF518AQ6AHZ1 1483 aa12.01□□□□□ -0.49
SCN3B-203ENST00000527125 ARHGEF28Q8N1W1 1705 aaKnown RBP12.01□□□□□ -0.49
SCN3B-203ENST00000527125 EIF5BO60841 1220 aaKnown RBP12.01□□□□□ -0.49
SCN3B-203ENST00000527125 DDIT3P35638 169 aa12.01□□□□□ -0.49
SCN3B-203ENST00000527125 RSPH6AQ9H0K4 717 aa12□□□□□ -0.49
SCN3B-203ENST00000527125 POGKQ9P215 609 aa12□□□□□ -0.49
SCN3B-203ENST00000527125 KNSTRNQ9Y448 316 aa12□□□□□ -0.49
SCN3B-203ENST00000527125 PIK3C2BO00750 1634 aa12□□□□□ -0.49
SCN3B-203ENST00000527125 CLUAP1Q96AJ1 413 aa12□□□□□ -0.49
SCN3B-203ENST00000527125 RRAGDQ9NQL2 400 aaPredicted RBP12□□□□□ -0.49
SCN3B-203ENST00000527125 FANCAO15360 1455 aa11.99□□□□□ -0.49
SCN3B-203ENST00000527125 WDR43Q15061 677 aaKnown RBP eCLIP11.99□□□□□ -0.49
SCN3B-203ENST00000527125 CDCA8Q53HL2 280 aa11.99□□□□□ -0.49
SCN3B-203ENST00000527125 WWC1Q8IX03 1113 aa11.99□□□□□ -0.49
SCN3B-203ENST00000527125 UGGT1Q9NYU2 1555 aa11.99□□□□□ -0.49
SCN3B-203ENST00000527125 ATP7AQ04656 1500 aa11.98□□□□□ -0.49
SCN3B-203ENST00000527125 APAF1O14727 1248 aa11.98□□□□□ -0.49
SCN3B-203ENST00000527125 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
SCN3B-203ENST00000527125 COL3A1P02461 1466 aaPredicted RBP11.98□□□□□ -0.49
SCN3B-203ENST00000527125 KIDINS220Q9ULH0 1771 aa11.98□□□□□ -0.49
SCN3B-203ENST00000527125 CCDC27Q2M243 656 aa11.98□□□□□ -0.49
SCN3B-203ENST00000527125 ARHGAP31Q2M1Z3 1444 aa11.98□□□□□ -0.49
SCN3B-203ENST00000527125 CLTCQ00610 1675 aaKnown RBP11.97□□□□□ -0.49
SCN3B-203ENST00000527125 RARSP54136 660 aaKnown RBP11.96□□□□□ -0.49
SCN3B-203ENST00000527125 PCDHB15Q9Y5E8 787 aa11.96□□□□□ -0.49
SCN3B-203ENST00000527125 TBC1D2Q9BYX2 928 aa11.95□□□□□ -0.5
SCN3B-203ENST00000527125 CDC42BPGQ6DT37 1551 aa11.95□□□□□ -0.5
SCN3B-203ENST00000527125 RGS3P49796 1198 aa11.95□□□□□ -0.5
SCN3B-203ENST00000527125 CFAP74Q9C0B2 1584 aa11.94□□□□□ -0.5
SCN3B-203ENST00000527125 RLBP1P12271 317 aa11.94□□□□□ -0.5
SCN3B-203ENST00000527125 CCDC146Q8IYE0 955 aa11.94□□□□□ -0.5
SCN3B-203ENST00000527125 SIGLEC1Q9BZZ2 1709 aa11.93□□□□□ -0.5
SCN3B-203ENST00000527125 TULP4Q9NRJ4 1543 aa11.93□□□□□ -0.5
SCN3B-203ENST00000527125 WDR63Q8IWG1 891 aa11.93□□□□□ -0.5
SCN3B-203ENST00000527125 CENPJQ9HC77 1338 aaPredicted RBP11.93□□□□□ -0.5
SCN3B-203ENST00000527125 XRCC6P12956 609 aaKnown RBP eCLIP11.92□□□□□ -0.5
SCN3B-203ENST00000527125 PANK1Q8TE04 598 aa11.92□□□□□ -0.5
SCN3B-203ENST00000527125 GLI2P10070 1586 aa11.91□□□□□ -0.5
SCN3B-203ENST00000527125 REREQ9P2R6 1566 aa11.91□□□□□ -0.5
SCN3B-203ENST00000527125 NOS1P29475 1434 aa11.91□□□□□ -0.5
SCN3B-203ENST00000527125 PMFBP1Q8TBY8 1022 aa11.91□□□□□ -0.5
SCN3B-203ENST00000527125 TNNQ9UQP3 1299 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 FRMPD1Q5SYB0 1578 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 HECW2Q9P2P5 1572 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 MED14O60244 1454 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 CLCN1P35523 988 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 L1TD1Q5T7N2 865 aaKnown RBP11.9□□□□□ -0.5
SCN3B-203ENST00000527125 COG6Q9Y2V7 657 aa11.9□□□□□ -0.5
SCN3B-203ENST00000527125 CD109Q6YHK3 1445 aa11.9□□□□□ -0.51
SCN3B-203ENST00000527125 CAMSAP1Q5T5Y3 1602 aa11.89□□□□□ -0.51
SCN3B-203ENST00000527125 PDZRN3Q9UPQ7 1066 aa11.89□□□□□ -0.51
SCN3B-203ENST00000527125 BECN1Q14457 450 aa11.89□□□□□ -0.51
SCN3B-203ENST00000527125 MCM4P33991 863 aa11.88□□□□□ -0.51
SCN3B-203ENST00000527125 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.88□□□□□ -0.51
SCN3B-203ENST00000527125 NSD3Q9BZ95 1437 aa11.88□□□□□ -0.51
SCN3B-203ENST00000527125 PUS7Q96PZ0 661 aaKnown RBP11.88□□□□□ -0.51
SCN3B-203ENST00000527125 KIF20BQ96Q89 1820 aa11.88□□□□□ -0.51
SCN3B-203ENST00000527125 ADGRF5Q8IZF2 1346 aa11.88□□□□□ -0.51
SCN3B-203ENST00000527125 HDAC1Q13547 482 aaPredicted RBP11.87□□□□□ -0.51
SCN3B-203ENST00000527125 RUNDC1Q96C34 613 aa11.87□□□□□ -0.51
SCN3B-203ENST00000527125 TUBGCP6Q96RT7 1819 aa11.87□□□□□ -0.51
SCN3B-203ENST00000527125 NEXMIFQ5QGS0 1516 aa11.86□□□□□ -0.51
SCN3B-203ENST00000527125 NSD2O96028 1365 aa11.86□□□□□ -0.51
SCN3B-203ENST00000527125 KNDC1Q76NI1 1749 aa11.86□□□□□ -0.51
SCN3B-203ENST00000527125 CT47B1P0C2W7 299 aaPredicted RBP11.85□□□□□ -0.51
SCN3B-203ENST00000527125 ABCC3O15438 1527 aa11.85□□□□□ -0.51
SCN3B-203ENST00000527125 RBM25P49756 843 aaKnown RBP11.85□□□□□ -0.51
SCN3B-203ENST00000527125 MVPQ14764 893 aaKnown RBP11.85□□□□□ -0.51
SCN3B-203ENST00000527125 SMC5Q8IY18 1101 aa11.85□□□□□ -0.51
SCN3B-203ENST00000527125 PLEKHF1Q96S99 279 aa11.85□□□□□ -0.51
SCN3B-203ENST00000527125 PPIP5K1Q6PFW1 1433 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 SNX21Q969T3 373 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 CFAP70Q5T0N1 1121 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 ISY1Q9ULR0 285 aaKnown RBP11.84□□□□□ -0.51
SCN3B-203ENST00000527125 YEATS2Q9ULM3 1422 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 CD163L1Q9NR16 1453 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 EFCAB2Q5VUJ9 269 aa11.84□□□□□ -0.51
SCN3B-203ENST00000527125 CLEC17AQ6ZS10 378 aa11.83□□□□□ -0.52
SCN3B-203ENST00000527125 TCP11L2Q8N4U5 519 aa11.83□□□□□ -0.52
SCN3B-203ENST00000527125 KIF2CQ99661 725 aa11.83□□□□□ -0.52
SCN3B-203ENST00000527125 PIK3R4Q99570 1358 aa11.83□□□□□ -0.52
SCN3B-203ENST00000527125 PANK2Q9BZ23 570 aa11.82□□□□□ -0.52
SCN3B-203ENST00000527125 SLKQ9H2G2 1235 aaPredicted RBP11.82□□□□□ -0.52
SCN3B-203ENST00000527125 CHMP5Q9NZZ3 219 aa11.82□□□□□ -0.52
SCN3B-203ENST00000527125 ERBB4Q15303 1308 aa11.81□□□□□ -0.52
SCN3B-203ENST00000527125 DLG5Q8TDM6 1919 aa11.81□□□□□ -0.52
SCN3B-203ENST00000527125 ANKRD36BQ8N2N9 1353 aa11.81□□□□□ -0.52
SCN3B-203ENST00000527125 BRPF1P55201 1214 aaPredicted RBP11.81□□□□□ -0.52
SCN3B-203ENST00000527125 RWDD1Q9H446 243 aaPredicted RBP11.81□□□□□ -0.52
SCN3B-203ENST00000527125 MYO5BQ9ULV0 1848 aa11.8□□□□□ -0.52
SCN3B-203ENST00000527125 FBLN2P98095 1184 aa11.8□□□□□ -0.52
SCN3B-203ENST00000527125 PNPLA6Q8IY17 1366 aa11.8□□□□□ -0.52
SCN3B-203ENST00000527125 SPAG9O60271 1321 aaKnown RBP11.8□□□□□ -0.52
SCN3B-203ENST00000527125 C14orf93Q9H972 538 aaKnown RBP11.8□□□□□ -0.52
SCN3B-203ENST00000527125 IL16Q14005 1332 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms