RNA–Protein interactions for RNA: ENST00000525939.1

ABCA7-208, Transcript of ATP binding cassette subfamily A member 7, human

TSL 3

Gene ABCA7, Length 374 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCA7-208	ENST00000525939	L3MBTL2	Q969R5	705 aa		32.12	■■■□□ 2.73
ABCA7-208	ENST00000525939	COL16A1	Q07092	1604 aa	Predicted RBP	32.11	■■■□□ 2.73
ABCA7-208	ENST00000525939	NHSL1	Q5SYE7	1610 aa		32.11	■■■□□ 2.73
ABCA7-208	ENST00000525939	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.07	■■■□□ 2.72
ABCA7-208	ENST00000525939	FMN2	Q9NZ56	1722 aa		32.07	■■■□□ 2.72
ABCA7-208	ENST00000525939	NEUROD1	Q13562	356 aa		32.07	■■■□□ 2.72
ABCA7-208	ENST00000525939	PRAM1	Q96QH2	718 aa		32.05	■■■□□ 2.72
ABCA7-208	ENST00000525939	ADGRB2	O60241	1585 aa		32.05	■■■□□ 2.72
ABCA7-208	ENST00000525939	MED1	Q15648	1581 aa	Predicted RBP	32.03	■■■□□ 2.72
ABCA7-208	ENST00000525939	TRAK1	Q9UPV9	953 aa		32.03	■■■□□ 2.72
ABCA7-208	ENST00000525939	TRPM1	Q7Z4N2	1603 aa		32	■■■□□ 2.71
ABCA7-208	ENST00000525939	POGK	Q9P215	609 aa		31.99	■■■□□ 2.71
ABCA7-208	ENST00000525939	JCAD	Q9P266	1359 aa		31.98	■■■□□ 2.71
ABCA7-208	ENST00000525939	PCGF6	Q9BYE7	350 aa		31.98	■■■□□ 2.71
ABCA7-208	ENST00000525939	SHPRH	Q149N8	1683 aa		31.97	■■■□□ 2.71
ABCA7-208	ENST00000525939	NBPF1	Q3BBV0	1214 aa		31.96	■■■□□ 2.71
ABCA7-208	ENST00000525939	ORAI2	Q96SN7	254 aa		31.96	■■■□□ 2.71
ABCA7-208	ENST00000525939	RGPD8	O14715	1765 aa	Predicted RBP	31.94	■■■□□ 2.7
ABCA7-208	ENST00000525939	DISP3	Q9P2K9	1392 aa		31.94	■■■□□ 2.7
ABCA7-208	ENST00000525939	SAFB2	Q14151	953 aa	Known RBP eCLIP	31.92	■■■□□ 2.7
ABCA7-208	ENST00000525939	KIF1A	Q12756	1690 aa		31.92	■■■□□ 2.7
ABCA7-208	ENST00000525939	TONSL	Q96HA7	1378 aa		31.91	■■■□□ 2.7
ABCA7-208	ENST00000525939	ESCO1	Q5FWF5	840 aa		31.89	■■■□□ 2.7
ABCA7-208	ENST00000525939	CLSPN	Q9HAW4	1339 aa		31.89	■■■□□ 2.7
ABCA7-208	ENST00000525939	ANKAR	Q7Z5J8	1434 aa		31.89	■■■□□ 2.7
ABCA7-208	ENST00000525939	SOS2	Q07890	1332 aa	Predicted RBP	31.88	■■■□□ 2.69
ABCA7-208	ENST00000525939	USP32	Q8NFA0	1604 aa		31.88	■■■□□ 2.69
ABCA7-208	ENST00000525939	LRRC59	Q96AG4	307 aa	Known RBP	31.87	■■■□□ 2.69
ABCA7-208	ENST00000525939	EIF3A	Q14152	1382 aa	Known RBP	31.85	■■■□□ 2.69
ABCA7-208	ENST00000525939	SPATA31A6	Q5VVP1	1343 aa		31.85	■■■□□ 2.69
ABCA7-208	ENST00000525939	DDX17	Q92841	729 aa	Known RBP	31.85	■■■□□ 2.69
ABCA7-208	ENST00000525939	NPHP3	Q7Z494	1330 aa		31.84	■■■□□ 2.69
ABCA7-208	ENST00000525939	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.84	■■■□□ 2.69
ABCA7-208	ENST00000525939	TULP4	Q9NRJ4	1543 aa		31.84	■■■□□ 2.69
ABCA7-208	ENST00000525939	GPRASP1	Q5JY77	1395 aa		31.83	■■■□□ 2.69
ABCA7-208	ENST00000525939	NUTM2F	A1L443	756 aa		31.83	■■■□□ 2.69
ABCA7-208	ENST00000525939	NBPF8	Q3BBV2	869 aa		31.83	■■■□□ 2.69
ABCA7-208	ENST00000525939	WASL	O00401	505 aa	Predicted RBP	31.82	■■■□□ 2.68
ABCA7-208	ENST00000525939	PXDN	Q92626	1479 aa		31.82	■■■□□ 2.68
ABCA7-208	ENST00000525939	HIRIP3	Q9BW71	556 aa	Predicted RBP	31.81	■■■□□ 2.68
ABCA7-208	ENST00000525939	ROCK2	O75116	1388 aa	Known RBP	31.81	■■■□□ 2.68
ABCA7-208	ENST00000525939	QRICH2	Q9H0J4	1663 aa		31.78	■■■□□ 2.68
ABCA7-208	ENST00000525939	RALGAPB	Q86X10	1494 aa		31.78	■■■□□ 2.68
ABCA7-208	ENST00000525939	FOXO3	O43524	673 aa		31.77	■■■□□ 2.68
ABCA7-208	ENST00000525939	PNPLA6	Q8IY17	1366 aa		31.77	■■■□□ 2.68
ABCA7-208	ENST00000525939	ITSN1	Q15811	1721 aa		31.77	■■■□□ 2.68
ABCA7-208	ENST00000525939	CENPJ	Q9HC77	1338 aa	Predicted RBP	31.76	■■■□□ 2.68
ABCA7-208	ENST00000525939	PHF8	Q9UPP1	1060 aa		31.76	■■■□□ 2.67
ABCA7-208	ENST00000525939	COL22A1	Q8NFW1	1626 aa	Predicted RBP	31.75	■■■□□ 2.67
ABCA7-208	ENST00000525939	LRP6	O75581	1613 aa		31.74	■■■□□ 2.67
ABCA7-208	ENST00000525939	PRR36	Q9H6K5	1346 aa		31.74	■■■□□ 2.67
ABCA7-208	ENST00000525939	TIMELESS	Q9UNS1	1208 aa		31.73	■■■□□ 2.67
ABCA7-208	ENST00000525939	ATP7B	P35670	1465 aa		31.72	■■■□□ 2.67
ABCA7-208	ENST00000525939	PHF23	Q9BUL5	403 aa	Predicted RBP	31.7	■■■□□ 2.67
ABCA7-208	ENST00000525939	TOPAZ1	Q8N9V7	1692 aa		31.7	■■■□□ 2.66
ABCA7-208	ENST00000525939	CDK19	Q9BWU1	502 aa		31.68	■■■□□ 2.66
ABCA7-208	ENST00000525939	KRT28	Q7Z3Y7	464 aa		31.65	■■■□□ 2.66
ABCA7-208	ENST00000525939	NUDT16	Q96DE0	195 aa	Known RBP	31.65	■■■□□ 2.66
ABCA7-208	ENST00000525939	RGS17	Q9UGC6	210 aa	Predicted RBP	31.64	■■■□□ 2.66
ABCA7-208	ENST00000525939	SBNO1	A3KN83	1393 aa		31.64	■■■□□ 2.66
ABCA7-208	ENST00000525939	XPC	Q01831	940 aa	Predicted RBP	31.63	■■■□□ 2.65
ABCA7-208	ENST00000525939	PSME1	Q06323	249 aa		31.63	■■■□□ 2.65
ABCA7-208	ENST00000525939	CARD11	Q9BXL7	1154 aa		31.63	■■■□□ 2.65
ABCA7-208	ENST00000525939	SPATA31A3	Q5VYP0	1347 aa		31.63	■■■□□ 2.65
ABCA7-208	ENST00000525939	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.63	■■■□□ 2.65
ABCA7-208	ENST00000525939	PMFBP1	Q8TBY8	1022 aa		31.62	■■■□□ 2.65
ABCA7-208	ENST00000525939	SBNO2	Q9Y2G9	1366 aa		31.62	■■■□□ 2.65
ABCA7-208	ENST00000525939	ILDR2	Q71H61	639 aa		31.61	■■■□□ 2.65
ABCA7-208	ENST00000525939	CCDC61	Q9Y6R9	512 aa		31.6	■■■□□ 2.65
ABCA7-208	ENST00000525939	TNS3	Q68CZ2	1445 aa		31.59	■■■□□ 2.65
ABCA7-208	ENST00000525939	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.57	■■■□□ 2.64
ABCA7-208	ENST00000525939	NUTM2E	B1AL46	878 aa	Predicted RBP	31.57	■■■□□ 2.64
ABCA7-208	ENST00000525939	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.57	■■■□□ 2.64
ABCA7-208	ENST00000525939	POLR3A	O14802	1390 aa	Predicted RBP	31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	MARF1	Q9Y4F3	1742 aa	Known RBP	31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	PLEKHG3	A1L390	1219 aa		31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	MEX3C	Q5U5Q3	659 aa	Known RBP	31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	CCER1	Q8TC90	406 aa	Predicted RBP	31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	ALS2	Q96Q42	1657 aa		31.56	■■■□□ 2.64
ABCA7-208	ENST00000525939	EVC2	Q86UK5	1308 aa		31.55	■■■□□ 2.64
ABCA7-208	ENST00000525939	SRPK2	P78362	688 aa	Known RBP	31.53	■■■□□ 2.64
ABCA7-208	ENST00000525939	NGDN	Q8NEJ9	315 aa	Known RBP	31.53	■■■□□ 2.64
ABCA7-208	ENST00000525939	ARHGEF10	O15013	1369 aa		31.53	■■■□□ 2.64
ABCA7-208	ENST00000525939	CABP2	Q9NPB3	220 aa		31.51	■■■□□ 2.63
ABCA7-208	ENST00000525939	PPIP5K1	Q6PFW1	1433 aa		31.49	■■■□□ 2.63
ABCA7-208	ENST00000525939	ABCA3	Q99758	1704 aa		31.48	■■■□□ 2.63
ABCA7-208	ENST00000525939	ACE	P12821	1306 aa		31.48	■■■□□ 2.63
ABCA7-208	ENST00000525939	ZNF772	Q68DY9	489 aa	Predicted RBP	31.47	■■■□□ 2.63
ABCA7-208	ENST00000525939	POTEA	Q6S8J7	498 aa		31.46	■■■□□ 2.63
ABCA7-208	ENST00000525939	AFF2	P51816	1311 aa		31.43	■■■□□ 2.62
ABCA7-208	ENST00000525939	BRD4	O60885	1362 aa	Predicted RBP	31.43	■■■□□ 2.62
ABCA7-208	ENST00000525939	ATAD2	Q6PL18	1390 aa		31.43	■■■□□ 2.62
ABCA7-208	ENST00000525939	CRYBG1	Q9Y4K1	1723 aa		31.42	■■■□□ 2.62
ABCA7-208	ENST00000525939	ADAMTS2	O95450	1211 aa		31.42	■■■□□ 2.62
ABCA7-208	ENST00000525939	C8orf37	Q96NL8	207 aa		31.42	■■■□□ 2.62
ABCA7-208	ENST00000525939	SLC24A1	O60721	1099 aa		31.4	■■■□□ 2.62
ABCA7-208	ENST00000525939	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.39	■■■□□ 2.62
ABCA7-208	ENST00000525939	PUS7	Q96PZ0	661 aa	Known RBP	31.39	■■■□□ 2.62
ABCA7-208	ENST00000525939	CABP1	Q9NZU7	370 aa		31.39	■■■□□ 2.62
ABCA7-208	ENST00000525939	AKAP12	Q02952	1782 aa		31.38	■■■□□ 2.61

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms