RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 CDK19Q9BWU1 502 aa14.43□□□□□ -0.1
SYNPO-204ENST00000519664 ADGRF5Q8IZF2 1346 aa14.43□□□□□ -0.1
SYNPO-204ENST00000519664 CDK11BP21127 795 aaKnown RBP14.43□□□□□ -0.1
SYNPO-204ENST00000519664 NLRP6P59044 892 aa14.43□□□□□ -0.1
SYNPO-204ENST00000519664 MAGI1Q96QZ7 1491 aaPredicted RBP14.43□□□□□ -0.1
SYNPO-204ENST00000519664 DDX11L8A8MPP1 907 aa14.42□□□□□ -0.1
SYNPO-204ENST00000519664 BIVM-ERCC5R4GMW8 1640 aa14.42□□□□□ -0.1
SYNPO-204ENST00000519664 RRS1Q15050 365 aaKnown RBP14.42□□□□□ -0.1
SYNPO-204ENST00000519664 AMER1Q5JTC6 1135 aaPredicted RBP14.41□□□□□ -0.1
SYNPO-204ENST00000519664 C9orf78Q9NZ63 289 aaPredicted RBP14.41□□□□□ -0.1
SYNPO-204ENST00000519664 SULT6B1Q6IMI4 303 aa14.41□□□□□ -0.1
SYNPO-204ENST00000519664 HSP90B1P14625 803 aaKnown RBP14.41□□□□□ -0.1
SYNPO-204ENST00000519664 TWISTNBQ3B726 338 aaPredicted RBP14.41□□□□□ -0.1
SYNPO-204ENST00000519664 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.41□□□□□ -0.1
SYNPO-204ENST00000519664 THOC2Q8NI27 1593 aaKnown RBP14.4□□□□□ -0.1
SYNPO-204ENST00000519664 SLC26A8Q96RN1 970 aa14.4□□□□□ -0.1
SYNPO-204ENST00000519664 PODXL2Q9NZ53 605 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 PSME1Q06323 249 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 WAPLQ7Z5K2 1190 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 GPATCH3Q96I76 525 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 FBLN1P23142 703 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 TAF7LQ5H9L4 462 aa14.39□□□□□ -0.11
SYNPO-204ENST00000519664 DISP3Q9P2K9 1392 aa14.38□□□□□ -0.11
SYNPO-204ENST00000519664 C1orf141Q5JVX7 400 aa14.38□□□□□ -0.11
SYNPO-204ENST00000519664 GNL2Q13823 731 aaKnown RBP14.38□□□□□ -0.11
SYNPO-204ENST00000519664 ATF7IPQ6VMQ6 1270 aa14.38□□□□□ -0.11
SYNPO-204ENST00000519664 REC8O95072 547 aa14.38□□□□□ -0.11
SYNPO-204ENST00000519664 AIMP1Q12904 312 aaKnown RBP14.38□□□□□ -0.11
SYNPO-204ENST00000519664 PLEKHH2Q8IVE3 1493 aa14.37□□□□□ -0.11
SYNPO-204ENST00000519664 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.37□□□□□ -0.11
SYNPO-204ENST00000519664 KIAA2012Q0VF49 1180 aa14.37□□□□□ -0.11
SYNPO-204ENST00000519664 NSD3Q9BZ95 1437 aa14.37□□□□□ -0.11
SYNPO-204ENST00000519664 DUSP27Q5VZP5 1158 aa14.37□□□□□ -0.11
SYNPO-204ENST00000519664 SYAP1Q96A49 352 aaPredicted RBP14.37□□□□□ -0.11
SYNPO-204ENST00000519664 GRIN2AQ12879 1464 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 DCTN1Q14203 1278 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 CCDC141Q6ZP82 1450 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 PTMSP20962 102 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 DIAPH3Q9NSV4 1193 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 MVPQ14764 893 aaKnown RBP14.36□□□□□ -0.11
SYNPO-204ENST00000519664 CHMP4AQ9BY43 222 aa14.36□□□□□ -0.11
SYNPO-204ENST00000519664 TMPOP42166 694 aaKnown RBP14.36□□□□□ -0.11
SYNPO-204ENST00000519664 SLC4A2P04920 1241 aa14.35□□□□□ -0.11
SYNPO-204ENST00000519664 CHAF1AQ13111 956 aaPredicted RBP14.35□□□□□ -0.11
SYNPO-204ENST00000519664 MCTP1Q6DN14 999 aa14.35□□□□□ -0.11
SYNPO-204ENST00000519664 WDR63Q8IWG1 891 aa14.35□□□□□ -0.11
SYNPO-204ENST00000519664 MIS18AQ9NYP9 233 aa14.35□□□□□ -0.11
SYNPO-204ENST00000519664 TMEM57Q8N5G2 664 aa14.34□□□□□ -0.11
SYNPO-204ENST00000519664 CUL7Q14999 1698 aa14.34□□□□□ -0.11
SYNPO-204ENST00000519664 GPATCH8Q9UKJ3 1502 aaKnown RBP14.34□□□□□ -0.11
SYNPO-204ENST00000519664 SSH1Q8WYL5 1049 aa14.34□□□□□ -0.11
SYNPO-204ENST00000519664 RARSP54136 660 aaKnown RBP14.33□□□□□ -0.11
SYNPO-204ENST00000519664 INTS3Q68E01 1043 aaKnown RBP14.33□□□□□ -0.11
SYNPO-204ENST00000519664 FBXO31Q5XUX0 539 aaPredicted RBP14.33□□□□□ -0.12
SYNPO-204ENST00000519664 ABTB2Q8N961 1025 aa14.33□□□□□ -0.12
SYNPO-204ENST00000519664 HDAC5Q9UQL6 1122 aa14.33□□□□□ -0.12
SYNPO-204ENST00000519664 LAMC3Q9Y6N6 1575 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 TRAK2O60296 914 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 IDI1Q13907 227 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 TOMM22Q9NS69 142 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 SLC52A1Q9NWF4 448 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 CDC45O75419 566 aa14.32□□□□□ -0.12
SYNPO-204ENST00000519664 SURF6O75683 361 aaKnown RBP14.32□□□□□ -0.12
SYNPO-204ENST00000519664 IFIT2P09913 472 aaKnown RBP14.32□□□□□ -0.12
SYNPO-204ENST00000519664 ISY1Q9ULR0 285 aaKnown RBP14.31□□□□□ -0.12
SYNPO-204ENST00000519664 FAM43AQ8N2R8 423 aa14.31□□□□□ -0.12
SYNPO-204ENST00000519664 NEK4P51957 841 aa14.31□□□□□ -0.12
SYNPO-204ENST00000519664 GOLGA6L6A8MZA4 724 aa14.3□□□□□ -0.12
SYNPO-204ENST00000519664 AAMPQ13685 434 aa14.3□□□□□ -0.12
SYNPO-204ENST00000519664 RNF214Q8ND24 703 aa14.3□□□□□ -0.12
SYNPO-204ENST00000519664 NRDCO43847 1150 aa14.3□□□□□ -0.12
SYNPO-204ENST00000519664 UBTFL1P0CB47 393 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-204ENST00000519664 NEXNQ0ZGT2 675 aa14.3□□□□□ -0.12
SYNPO-204ENST00000519664 VPS37CA5D8V6 355 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-204ENST00000519664 IGHDP01880 384 aa14.29□□□□□ -0.12
SYNPO-204ENST00000519664 SKOR2Q2VWA4 1001 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-204ENST00000519664 NLRP2Q9NX02 1062 aa14.29□□□□□ -0.12
SYNPO-204ENST00000519664 EMILIN1Q9Y6C2 1016 aa14.29□□□□□ -0.12
SYNPO-204ENST00000519664 FOSBP53539 338 aa14.28□□□□□ -0.12
SYNPO-204ENST00000519664 TTC5Q8N0Z6 440 aa14.28□□□□□ -0.12
SYNPO-204ENST00000519664 MCM10Q7L590 875 aa14.28□□□□□ -0.12
SYNPO-204ENST00000519664 CHD1LQ86WJ1 897 aa14.27□□□□□ -0.12
SYNPO-204ENST00000519664 NME9Q86XW9 330 aa14.27□□□□□ -0.12
SYNPO-204ENST00000519664 H3BQV1 296 aa14.27□□□□□ -0.13
SYNPO-204ENST00000519664 ZKSCAN1P17029 563 aaPredicted RBP14.27□□□□□ -0.13
SYNPO-204ENST00000519664 IFFO2Q5TF58 517 aa14.27□□□□□ -0.13
SYNPO-204ENST00000519664 G3BP1Q13283 466 aaKnown RBP eCLIP14.27□□□□□ -0.13
SYNPO-204ENST00000519664 RBM33Q96EV2 1170 aaKnown RBP14.26□□□□□ -0.13
SYNPO-204ENST00000519664 SF3A1Q15459 793 aaKnown RBP14.26□□□□□ -0.13
SYNPO-204ENST00000519664 ESCO1Q5FWF5 840 aa14.26□□□□□ -0.13
SYNPO-204ENST00000519664 MAP4K4O95819 1239 aaPredicted RBP14.26□□□□□ -0.13
SYNPO-204ENST00000519664 CAVIN1Q6NZI2 390 aaKnown RBP14.26□□□□□ -0.13
SYNPO-204ENST00000519664 UGGT2Q9NYU1 1516 aa14.26□□□□□ -0.13
SYNPO-204ENST00000519664 NUP153P49790 1475 aaKnown RBP14.26□□□□□ -0.13
SYNPO-204ENST00000519664 FAM184AQ8NB25 1140 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 TESK2Q96S53 571 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 FCHSD2O94868 740 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 SYTL4Q96C24 671 aaPredicted RBP14.25□□□□□ -0.13
SYNPO-204ENST00000519664 TNNQ9UQP3 1299 aa14.25□□□□□ -0.13
SYNPO-204ENST00000519664 RTEL1-TNFRSF6BF6WH68 1400 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms