RNA–Protein interactions for RNA: ENST00000515881.5

DDR1-280, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 3

Gene DDR1, Length 956 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-280	ENST00000515881	KNDC1	Q76NI1	1749 aa		28.7	■■■□□ 2.19
DDR1-280	ENST00000515881	LRRC59	Q96AG4	307 aa	Known RBP	28.7	■■■□□ 2.18
DDR1-280	ENST00000515881	ORAI2	Q96SN7	254 aa		28.7	■■■□□ 2.18
DDR1-280	ENST00000515881	POTEA	Q6S8J7	498 aa		28.69	■■■□□ 2.18
DDR1-280	ENST00000515881	PLEKHH1	Q9ULM0	1364 aa		28.69	■■■□□ 2.18
DDR1-280	ENST00000515881	LAMC1	P11047	1609 aa		28.69	■■■□□ 2.18
DDR1-280	ENST00000515881	DHX57	Q6P158	1386 aa	Known RBP	28.66	■■■□□ 2.18
DDR1-280	ENST00000515881	MEX3C	Q5U5Q3	659 aa	Known RBP	28.66	■■■□□ 2.18
DDR1-280	ENST00000515881	SIRT1	Q96EB6	747 aa		28.66	■■■□□ 2.18
DDR1-280	ENST00000515881	PNPLA6	Q8IY17	1366 aa		28.63	■■■□□ 2.17
DDR1-280	ENST00000515881	NUTM2B	A6NNL0	878 aa	Predicted RBP	28.63	■■■□□ 2.17
DDR1-280	ENST00000515881	NUTM2E	B1AL46	878 aa	Predicted RBP	28.63	■■■□□ 2.17
DDR1-280	ENST00000515881	NUTM2A	Q8IVF1	878 aa	Predicted RBP	28.63	■■■□□ 2.17
DDR1-280	ENST00000515881	DCAF11	Q8TEB1	546 aa		28.62	■■■□□ 2.17
DDR1-280	ENST00000515881	SOS2	Q07890	1332 aa	Predicted RBP	28.62	■■■□□ 2.17
DDR1-280	ENST00000515881	ESCO1	Q5FWF5	840 aa		28.61	■■■□□ 2.17
DDR1-280	ENST00000515881	KDM2A	Q9Y2K7	1162 aa		28.6	■■■□□ 2.17
DDR1-280	ENST00000515881	STAC3	Q96MF2	364 aa		28.59	■■■□□ 2.17
DDR1-280	ENST00000515881	NUTM2F	A1L443	756 aa		28.57	■■■□□ 2.16
DDR1-280	ENST00000515881	ADGRB1	O14514	1584 aa		28.57	■■■□□ 2.16
DDR1-280	ENST00000515881	ZNF772	Q68DY9	489 aa	Predicted RBP	28.56	■■■□□ 2.16
DDR1-280	ENST00000515881	NPHP3	Q7Z494	1330 aa		28.56	■■■□□ 2.16
DDR1-280	ENST00000515881	PRAM1	Q96QH2	718 aa		28.56	■■■□□ 2.16
DDR1-280	ENST00000515881	DLC1	Q96QB1	1528 aa		28.55	■■■□□ 2.16
DDR1-280	ENST00000515881	FMN2	Q9NZ56	1722 aa		28.52	■■■□□ 2.16
DDR1-280	ENST00000515881	FOXO3	O43524	673 aa		28.51	■■■□□ 2.15
DDR1-280	ENST00000515881	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.51	■■■□□ 2.15
DDR1-280	ENST00000515881	PXDN	Q92626	1479 aa		28.51	■■■□□ 2.15
DDR1-280	ENST00000515881	POGK	Q9P215	609 aa		28.5	■■■□□ 2.15
DDR1-280	ENST00000515881	TRAK1	Q9UPV9	953 aa		28.48	■■■□□ 2.15
DDR1-280	ENST00000515881	AFF2	P51816	1311 aa		28.47	■■■□□ 2.15
DDR1-280	ENST00000515881	XPC	Q01831	940 aa	Predicted RBP	28.47	■■■□□ 2.15
DDR1-280	ENST00000515881	C8orf37	Q96NL8	207 aa		28.45	■■■□□ 2.14
DDR1-280	ENST00000515881	ADAMTS2	O95450	1211 aa		28.44	■■■□□ 2.14
DDR1-280	ENST00000515881	KIF1A	Q12756	1690 aa		28.43	■■■□□ 2.14
DDR1-280	ENST00000515881	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.43	■■■□□ 2.14
DDR1-280	ENST00000515881	ADGRB2	O60241	1585 aa		28.42	■■■□□ 2.14
DDR1-280	ENST00000515881	PHF8	Q9UPP1	1060 aa		28.4	■■■□□ 2.14
DDR1-280	ENST00000515881	RXRB	P28702	533 aa		28.39	■■■□□ 2.14
DDR1-280	ENST00000515881	ANKAR	Q7Z5J8	1434 aa		28.39	■■■□□ 2.14
DDR1-280	ENST00000515881	NGLY1	Q96IV0	654 aa		28.38	■■■□□ 2.13
DDR1-280	ENST00000515881	HIRIP3	Q9BW71	556 aa	Predicted RBP	28.38	■■■□□ 2.13
DDR1-280	ENST00000515881	MINK1	Q8N4C8	1332 aa	Predicted RBP	28.38	■■■□□ 2.13
DDR1-280	ENST00000515881	KRT28	Q7Z3Y7	464 aa		28.37	■■■□□ 2.13
DDR1-280	ENST00000515881	SPATA31A3	Q5VYP0	1347 aa		28.36	■■■□□ 2.13
DDR1-280	ENST00000515881	EIF3A	Q14152	1382 aa	Known RBP	28.34	■■■□□ 2.13
DDR1-280	ENST00000515881	USP32	Q8NFA0	1604 aa		28.33	■■■□□ 2.13
DDR1-280	ENST00000515881	QTRT2	Q9H974	415 aa	Known RBP	28.32	■■■□□ 2.12
DDR1-280	ENST00000515881	CDK12	Q9NYV4	1490 aa	Predicted RBP	28.32	■■■□□ 2.12
DDR1-280	ENST00000515881	WASL	O00401	505 aa	Predicted RBP	28.31	■■■□□ 2.12
DDR1-280	ENST00000515881	PSME1	Q06323	249 aa		28.31	■■■□□ 2.12
DDR1-280	ENST00000515881	RGPD8	O14715	1765 aa	Predicted RBP	28.3	■■■□□ 2.12
DDR1-280	ENST00000515881	TULP4	Q9NRJ4	1543 aa		28.3	■■■□□ 2.12
DDR1-280	ENST00000515881	FNBP4	Q8N3X1	1017 aa	Predicted RBP	28.3	■■■□□ 2.12
DDR1-280	ENST00000515881	ARHGEF28	Q8N1W1	1705 aa	Known RBP	28.29	■■■□□ 2.12
DDR1-280	ENST00000515881	KIAA1210	Q9ULL0	1709 aa		28.29	■■■□□ 2.12
DDR1-280	ENST00000515881	TNS3	Q68CZ2	1445 aa		28.29	■■■□□ 2.12
DDR1-280	ENST00000515881	PRR36	Q9H6K5	1346 aa		28.29	■■■□□ 2.12
DDR1-280	ENST00000515881	PMFBP1	Q8TBY8	1022 aa		28.29	■■■□□ 2.12
DDR1-280	ENST00000515881	SBNO1	A3KN83	1393 aa		28.28	■■■□□ 2.12
DDR1-280	ENST00000515881	USP21	Q9UK80	565 aa		28.28	■■■□□ 2.12
DDR1-280	ENST00000515881	RBM6	P78332	1123 aa	Known RBP	28.27	■■■□□ 2.12
DDR1-280	ENST00000515881	NBPF1	Q3BBV0	1214 aa		28.27	■■■□□ 2.12
DDR1-280	ENST00000515881	L3MBTL2	Q969R5	705 aa		28.25	■■■□□ 2.11
DDR1-280	ENST00000515881	SIN3A	Q96ST3	1273 aa		28.25	■■■□□ 2.11
DDR1-280	ENST00000515881	TRPC5	Q9UL62	973 aa	Predicted RBP	28.23	■■■□□ 2.11
DDR1-280	ENST00000515881	RGS12	O14924	1447 aa		28.22	■■■□□ 2.11
DDR1-280	ENST00000515881	ARHGEF10	O15013	1369 aa		28.22	■■■□□ 2.11
DDR1-280	ENST00000515881	ATRN	O75882	1429 aa		28.2	■■■□□ 2.11
DDR1-280	ENST00000515881	LMOD2	Q6P5Q4	547 aa		28.2	■■■□□ 2.1
DDR1-280	ENST00000515881	GPRASP1	Q5JY77	1395 aa		28.2	■■■□□ 2.1
DDR1-280	ENST00000515881	ATP7B	P35670	1465 aa		28.2	■■■□□ 2.1
DDR1-280	ENST00000515881	BCL9L	Q86UU0	1499 aa		28.2	■■■□□ 2.1
DDR1-280	ENST00000515881	NEUROD1	Q13562	356 aa		28.19	■■■□□ 2.1
DDR1-280	ENST00000515881	CABLES1	Q8TDN4	633 aa		28.18	■■■□□ 2.1
DDR1-280	ENST00000515881	NUDT16	Q96DE0	195 aa	Known RBP	28.18	■■■□□ 2.1
DDR1-280	ENST00000515881	MARF1	Q9Y4F3	1742 aa	Known RBP	28.18	■■■□□ 2.1
DDR1-280	ENST00000515881	HAP1	P54257	671 aa	Predicted RBP	28.17	■■■□□ 2.1
DDR1-280	ENST00000515881	CDK19	Q9BWU1	502 aa		28.17	■■■□□ 2.1
DDR1-280	ENST00000515881	NGDN	Q8NEJ9	315 aa	Known RBP	28.16	■■■□□ 2.1
DDR1-280	ENST00000515881	PLEKHG5	O94827	1062 aa		28.14	■■■□□ 2.1
DDR1-280	ENST00000515881	UPF1	Q92900	1129 aa	Known RBP eCLIP	28.14	■■■□□ 2.1
DDR1-280	ENST00000515881	TRPM3	Q9HCF6	1732 aa	Predicted RBP	28.14	■■■□□ 2.1
DDR1-280	ENST00000515881	CENPJ	Q9HC77	1338 aa	Predicted RBP	28.14	■■■□□ 2.09
DDR1-280	ENST00000515881	SLIT2	O94813	1529 aa		28.13	■■■□□ 2.09
DDR1-280	ENST00000515881	UNC5CL	Q8IV45	518 aa		28.11	■■■□□ 2.09
DDR1-280	ENST00000515881	ITSN1	Q15811	1721 aa		28.09	■■■□□ 2.09
DDR1-280	ENST00000515881	TRIM26	Q12899	539 aa	Predicted RBP	28.09	■■■□□ 2.09
DDR1-280	ENST00000515881	CCDC61	Q9Y6R9	512 aa		28.09	■■■□□ 2.09
DDR1-280	ENST00000515881	ABCA3	Q99758	1704 aa		28.09	■■■□□ 2.09
DDR1-280	ENST00000515881	ALS2	Q96Q42	1657 aa		28.08	■■■□□ 2.09
DDR1-280	ENST00000515881	PAK3	O75914	559 aa	Predicted RBP	28.07	■■■□□ 2.08
DDR1-280	ENST00000515881	GJD4	Q96KN9	370 aa	Predicted RBP	28.07	■■■□□ 2.08
DDR1-280	ENST00000515881	TRPM1	Q7Z4N2	1603 aa		28.07	■■■□□ 2.08
DDR1-280	ENST00000515881	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	28.06	■■■□□ 2.08
DDR1-280	ENST00000515881	POLR3A	O14802	1390 aa	Predicted RBP	28.06	■■■□□ 2.08
DDR1-280	ENST00000515881	TOPAZ1	Q8N9V7	1692 aa		28.05	■■■□□ 2.08
DDR1-280	ENST00000515881	ROCK2	O75116	1388 aa	Known RBP	28.04	■■■□□ 2.08
DDR1-280	ENST00000515881	PLEKHG3	A1L390	1219 aa		28.04	■■■□□ 2.08
DDR1-280	ENST00000515881	SRPK2	P78362	688 aa	Known RBP	28.04	■■■□□ 2.08

Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms