RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 BRINP3Q76B58 766 aa18.55■□□□□ 0.56
CLCN3-210ENST00000515420 KDM2AQ9Y2K7 1162 aa18.55■□□□□ 0.56
CLCN3-210ENST00000515420 DISP3Q9P2K9 1392 aa18.54■□□□□ 0.56
CLCN3-210ENST00000515420 WAPLQ7Z5K2 1190 aa18.51■□□□□ 0.55
CLCN3-210ENST00000515420 JCADQ9P266 1359 aa18.51■□□□□ 0.55
CLCN3-210ENST00000515420 PLEKHH1Q9ULM0 1364 aa18.51■□□□□ 0.55
CLCN3-210ENST00000515420 FMN2Q9NZ56 1722 aa18.51■□□□□ 0.55
CLCN3-210ENST00000515420 ADGRB2O60241 1585 aa18.5■□□□□ 0.55
CLCN3-210ENST00000515420 SHPRHQ149N8 1683 aa18.5■□□□□ 0.55
CLCN3-210ENST00000515420 MSH5O43196 834 aa18.48■□□□□ 0.55
CLCN3-210ENST00000515420 ARHGEF28Q8N1W1 1705 aaKnown RBP18.48■□□□□ 0.55
CLCN3-210ENST00000515420 PRAM1Q96QH2 718 aa18.46■□□□□ 0.55
CLCN3-210ENST00000515420 L3MBTL2Q969R5 705 aa18.45■□□□□ 0.54
CLCN3-210ENST00000515420 SIN3AQ96ST3 1273 aa18.45■□□□□ 0.54
CLCN3-210ENST00000515420 KIF1AQ12756 1690 aa18.44■□□□□ 0.54
CLCN3-210ENST00000515420 POGKQ9P215 609 aa18.44■□□□□ 0.54
CLCN3-210ENST00000515420 SPATA31A6Q5VVP1 1343 aa18.44■□□□□ 0.54
CLCN3-210ENST00000515420 ORAI2Q96SN7 254 aa18.43■□□□□ 0.54
CLCN3-210ENST00000515420 TRAK1Q9UPV9 953 aa18.43■□□□□ 0.54
CLCN3-210ENST00000515420 LRRC59Q96AG4 307 aaKnown RBP18.42■□□□□ 0.54
CLCN3-210ENST00000515420 TRPM1Q7Z4N2 1603 aa18.41■□□□□ 0.54
CLCN3-210ENST00000515420 SOS2Q07890 1332 aaPredicted RBP18.41■□□□□ 0.54
CLCN3-210ENST00000515420 EIF3AQ14152 1382 aaKnown RBP18.41■□□□□ 0.54
CLCN3-210ENST00000515420 ANKARQ7Z5J8 1434 aa18.4■□□□□ 0.54
CLCN3-210ENST00000515420 NEUROD1Q13562 356 aa18.4■□□□□ 0.54
CLCN3-210ENST00000515420 NPHP3Q7Z494 1330 aa18.4■□□□□ 0.54
CLCN3-210ENST00000515420 ESCO1Q5FWF5 840 aa18.39■□□□□ 0.53
CLCN3-210ENST00000515420 RGPD8O14715 1765 aaPredicted RBP18.39■□□□□ 0.53
CLCN3-210ENST00000515420 SAFB2Q14151 953 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLCN3-210ENST00000515420 PXDNQ92626 1479 aa18.37■□□□□ 0.53
CLCN3-210ENST00000515420 TULP4Q9NRJ4 1543 aa18.37■□□□□ 0.53
CLCN3-210ENST00000515420 USP32Q8NFA0 1604 aa18.37■□□□□ 0.53
CLCN3-210ENST00000515420 NBPF1Q3BBV0 1214 aa18.36■□□□□ 0.53
CLCN3-210ENST00000515420 PNPLA6Q8IY17 1366 aa18.36■□□□□ 0.53
CLCN3-210ENST00000515420 DDX17Q92841 729 aaKnown RBP18.36■□□□□ 0.53
CLCN3-210ENST00000515420 TONSLQ96HA7 1378 aa18.35■□□□□ 0.53
CLCN3-210ENST00000515420 LRP6O75581 1613 aa18.34■□□□□ 0.53
CLCN3-210ENST00000515420 COL22A1Q8NFW1 1626 aaPredicted RBP18.34■□□□□ 0.53
CLCN3-210ENST00000515420 MINK1Q8N4C8 1332 aaPredicted RBP18.34■□□□□ 0.53
CLCN3-210ENST00000515420 NUTM2FA1L443 756 aa18.34■□□□□ 0.53
CLCN3-210ENST00000515420 ITSN1Q15811 1721 aa18.34■□□□□ 0.53
CLCN3-210ENST00000515420 WASLO00401 505 aaPredicted RBP18.33■□□□□ 0.52
CLCN3-210ENST00000515420 GPRASP1Q5JY77 1395 aa18.32■□□□□ 0.52
CLCN3-210ENST00000515420 FOXO3O43524 673 aa18.32■□□□□ 0.52
CLCN3-210ENST00000515420 ILDR2Q71H61 639 aa18.32■□□□□ 0.52
CLCN3-210ENST00000515420 PHF8Q9UPP1 1060 aa18.32■□□□□ 0.52
CLCN3-210ENST00000515420 ROCK2O75116 1388 aaKnown RBP18.31■□□□□ 0.52
CLCN3-210ENST00000515420 CLSPNQ9HAW4 1339 aa18.31■□□□□ 0.52
CLCN3-210ENST00000515420 HIRIP3Q9BW71 556 aaPredicted RBP18.31■□□□□ 0.52
CLCN3-210ENST00000515420 QRICH2Q9H0J4 1663 aa18.31■□□□□ 0.52
CLCN3-210ENST00000515420 CENPJQ9HC77 1338 aaPredicted RBP18.29■□□□□ 0.52
CLCN3-210ENST00000515420 ATP7BP35670 1465 aa18.29■□□□□ 0.52
CLCN3-210ENST00000515420 RALGAPBQ86X10 1494 aa18.28■□□□□ 0.52
CLCN3-210ENST00000515420 RGS17Q9UGC6 210 aaPredicted RBP18.28■□□□□ 0.52
CLCN3-210ENST00000515420 TOPAZ1Q8N9V7 1692 aa18.28■□□□□ 0.52
CLCN3-210ENST00000515420 PRR36Q9H6K5 1346 aa18.27■□□□□ 0.52
CLCN3-210ENST00000515420 NBPF8Q3BBV2 869 aa18.27■□□□□ 0.52
CLCN3-210ENST00000515420 MEX3CQ5U5Q3 659 aaKnown RBP18.27■□□□□ 0.52
CLCN3-210ENST00000515420 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.52
CLCN3-210ENST00000515420 PSME1Q06323 249 aa18.26■□□□□ 0.51
CLCN3-210ENST00000515420 SBNO1A3KN83 1393 aa18.26■□□□□ 0.51
CLCN3-210ENST00000515420 SPATA31A3Q5VYP0 1347 aa18.25■□□□□ 0.51
CLCN3-210ENST00000515420 TNS3Q68CZ2 1445 aa18.25■□□□□ 0.51
CLCN3-210ENST00000515420 KRT28Q7Z3Y7 464 aa18.25■□□□□ 0.51
CLCN3-210ENST00000515420 TRPM3Q9HCF6 1732 aaPredicted RBP18.24■□□□□ 0.51
CLCN3-210ENST00000515420 NUTM2BA6NNL0 878 aaPredicted RBP18.24■□□□□ 0.51
CLCN3-210ENST00000515420 NUTM2EB1AL46 878 aaPredicted RBP18.24■□□□□ 0.51
CLCN3-210ENST00000515420 XPCQ01831 940 aaPredicted RBP18.24■□□□□ 0.51
CLCN3-210ENST00000515420 NUTM2AQ8IVF1 878 aaPredicted RBP18.24■□□□□ 0.51
CLCN3-210ENST00000515420 CDK19Q9BWU1 502 aa18.24■□□□□ 0.51
CLCN3-210ENST00000515420 MARF1Q9Y4F3 1742 aaKnown RBP18.23■□□□□ 0.51
CLCN3-210ENST00000515420 NUDT16Q96DE0 195 aaKnown RBP18.23■□□□□ 0.51
CLCN3-210ENST00000515420 ARHGEF10O15013 1369 aa18.22■□□□□ 0.51
CLCN3-210ENST00000515420 ZNF772Q68DY9 489 aaPredicted RBP18.22■□□□□ 0.51
CLCN3-210ENST00000515420 PMFBP1Q8TBY8 1022 aa18.22■□□□□ 0.51
CLCN3-210ENST00000515420 TIMELESSQ9UNS1 1208 aa18.22■□□□□ 0.51
CLCN3-210ENST00000515420 SBNO2Q9Y2G9 1366 aa18.21■□□□□ 0.51
CLCN3-210ENST00000515420 CCDC61Q9Y6R9 512 aa18.21■□□□□ 0.51
CLCN3-210ENST00000515420 ALS2Q96Q42 1657 aa18.21■□□□□ 0.51
CLCN3-210ENST00000515420 POLR3AO14802 1390 aaPredicted RBP18.2■□□□□ 0.5
CLCN3-210ENST00000515420 SOCS7O14512 581 aa18.19■□□□□ 0.5
CLCN3-210ENST00000515420 POTEAQ6S8J7 498 aa18.19■□□□□ 0.5
CLCN3-210ENST00000515420 CARD11Q9BXL7 1154 aa18.19■□□□□ 0.5
CLCN3-210ENST00000515420 PLEKHG3A1L390 1219 aa18.18■□□□□ 0.5
CLCN3-210ENST00000515420 NGDNQ8NEJ9 315 aaKnown RBP18.18■□□□□ 0.5
CLCN3-210ENST00000515420 EVC2Q86UK5 1308 aa18.18■□□□□ 0.5
CLCN3-210ENST00000515420 ABCA3Q99758 1704 aa18.18■□□□□ 0.5
CLCN3-210ENST00000515420 SRPK2P78362 688 aaKnown RBP18.17■□□□□ 0.5
CLCN3-210ENST00000515420 AFF2P51816 1311 aa18.17■□□□□ 0.5
CLCN3-210ENST00000515420 ADAMTS2O95450 1211 aa18.15■□□□□ 0.5
CLCN3-210ENST00000515420 C8orf37Q96NL8 207 aa18.15■□□□□ 0.5
CLCN3-210ENST00000515420 PPIP5K1Q6PFW1 1433 aa18.15■□□□□ 0.5
CLCN3-210ENST00000515420 BRD4O60885 1362 aaPredicted RBP18.14■□□□□ 0.49
CLCN3-210ENST00000515420 CRYBG1Q9Y4K1 1723 aa18.13■□□□□ 0.49
CLCN3-210ENST00000515420 FNBP4Q8N3X1 1017 aaPredicted RBP18.13■□□□□ 0.49
CLCN3-210ENST00000515420 NGLY1Q96IV0 654 aa18.13■□□□□ 0.49
CLCN3-210ENST00000515420 CABP2Q9NPB3 220 aa18.13■□□□□ 0.49
CLCN3-210ENST00000515420 ACEP12821 1306 aa18.13■□□□□ 0.49
CLCN3-210ENST00000515420 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.12■□□□□ 0.49
CLCN3-210ENST00000515420 PIAS4Q8N2W9 510 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms