RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 C1orf167Q5SNV9 1468 aa16.71■□□□□ 0.27
VCAN-212ENST00000515397 ESCO1Q5FWF5 840 aa16.7■□□□□ 0.26
VCAN-212ENST00000515397 NUTM2BA6NNL0 878 aaPredicted RBP16.69■□□□□ 0.26
VCAN-212ENST00000515397 NUTM2EB1AL46 878 aaPredicted RBP16.69■□□□□ 0.26
VCAN-212ENST00000515397 NUTM2AQ8IVF1 878 aaPredicted RBP16.69■□□□□ 0.26
VCAN-212ENST00000515397 POGKQ9P215 609 aa16.69■□□□□ 0.26
VCAN-212ENST00000515397 RGS17Q9UGC6 210 aaPredicted RBP16.69■□□□□ 0.26
VCAN-212ENST00000515397 JCADQ9P266 1359 aa16.68■□□□□ 0.26
VCAN-212ENST00000515397 XPCQ01831 940 aaPredicted RBP16.68■□□□□ 0.26
VCAN-212ENST00000515397 HIRIP3Q9BW71 556 aaPredicted RBP16.68■□□□□ 0.26
VCAN-212ENST00000515397 PRAG1Q86YV5 1406 aa16.68■□□□□ 0.26
VCAN-212ENST00000515397 TECPR2O15040 1411 aa16.67■□□□□ 0.26
VCAN-212ENST00000515397 NBPF1Q3BBV0 1214 aa16.66■□□□□ 0.26
VCAN-212ENST00000515397 L3MBTL2Q969R5 705 aa16.66■□□□□ 0.26
VCAN-212ENST00000515397 SIRT1Q96EB6 747 aa16.66■□□□□ 0.26
VCAN-212ENST00000515397 FOXO3O43524 673 aa16.65■□□□□ 0.26
VCAN-212ENST00000515397 COL16A1Q07092 1604 aaPredicted RBP16.65■□□□□ 0.26
VCAN-212ENST00000515397 MINK1Q8N4C8 1332 aaPredicted RBP16.65■□□□□ 0.26
VCAN-212ENST00000515397 LRRC59Q96AG4 307 aaKnown RBP16.64■□□□□ 0.25
VCAN-212ENST00000515397 AHDC1Q5TGY3 1603 aaPredicted RBP16.63■□□□□ 0.25
VCAN-212ENST00000515397 MEX3CQ5U5Q3 659 aaKnown RBP16.63■□□□□ 0.25
VCAN-212ENST00000515397 POTEAQ6S8J7 498 aa16.63■□□□□ 0.25
VCAN-212ENST00000515397 STAC3Q96MF2 364 aa16.63■□□□□ 0.25
VCAN-212ENST00000515397 ADGRB1O14514 1584 aa16.62■□□□□ 0.25
VCAN-212ENST00000515397 LRP6O75581 1613 aa16.59■□□□□ 0.25
VCAN-212ENST00000515397 PLEKHG5O94827 1062 aa16.59■□□□□ 0.25
VCAN-212ENST00000515397 PMFBP1Q8TBY8 1022 aa16.59■□□□□ 0.25
VCAN-212ENST00000515397 SOS2Q07890 1332 aaPredicted RBP16.59■□□□□ 0.25
VCAN-212ENST00000515397 SPATA31A6Q5VVP1 1343 aa16.59■□□□□ 0.25
VCAN-212ENST00000515397 KNDC1Q76NI1 1749 aa16.58■□□□□ 0.24
VCAN-212ENST00000515397 LAMC1P11047 1609 aa16.57■□□□□ 0.24
VCAN-212ENST00000515397 CDC42BPGQ6DT37 1551 aa16.57■□□□□ 0.24
VCAN-212ENST00000515397 PNPLA6Q8IY17 1366 aa16.57■□□□□ 0.24
VCAN-212ENST00000515397 ADAMTS2O95450 1211 aa16.57■□□□□ 0.24
VCAN-212ENST00000515397 NPHP3Q7Z494 1330 aa16.56■□□□□ 0.24
VCAN-212ENST00000515397 PHF8Q9UPP1 1060 aa16.56■□□□□ 0.24
VCAN-212ENST00000515397 NHSL1Q5SYE7 1610 aa16.56■□□□□ 0.24
VCAN-212ENST00000515397 KRT28Q7Z3Y7 464 aa16.55■□□□□ 0.24
VCAN-212ENST00000515397 C8orf37Q96NL8 207 aa16.55■□□□□ 0.24
VCAN-212ENST00000515397 DLC1Q96QB1 1528 aa16.55■□□□□ 0.24
VCAN-212ENST00000515397 WASLO00401 505 aaPredicted RBP16.54■□□□□ 0.24
VCAN-212ENST00000515397 PRR36Q9H6K5 1346 aa16.53■□□□□ 0.24
VCAN-212ENST00000515397 NBPF8Q3BBV2 869 aa16.53■□□□□ 0.24
VCAN-212ENST00000515397 PCGF6Q9BYE7 350 aa16.53■□□□□ 0.24
VCAN-212ENST00000515397 PSME1Q06323 249 aa16.52■□□□□ 0.24
VCAN-212ENST00000515397 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
VCAN-212ENST00000515397 FMN2Q9NZ56 1722 aa16.51■□□□□ 0.23
VCAN-212ENST00000515397 SHPRHQ149N8 1683 aa16.51■□□□□ 0.23
VCAN-212ENST00000515397 CDK19Q9BWU1 502 aa16.51■□□□□ 0.23
VCAN-212ENST00000515397 AFF2P51816 1311 aa16.5■□□□□ 0.23
VCAN-212ENST00000515397 PXDNQ92626 1479 aa16.5■□□□□ 0.23
VCAN-212ENST00000515397 NGLY1Q96IV0 654 aa16.5■□□□□ 0.23
VCAN-212ENST00000515397 RGPD8O14715 1765 aaPredicted RBP16.49■□□□□ 0.23
VCAN-212ENST00000515397 CABLES1Q8TDN4 633 aa16.49■□□□□ 0.23
VCAN-212ENST00000515397 NUDT16Q96DE0 195 aaKnown RBP16.49■□□□□ 0.23
VCAN-212ENST00000515397 SPATA31A3Q5VYP0 1347 aa16.47■□□□□ 0.23
VCAN-212ENST00000515397 ZNF772Q68DY9 489 aaPredicted RBP16.47■□□□□ 0.23
VCAN-212ENST00000515397 NGDNQ8NEJ9 315 aaKnown RBP16.47■□□□□ 0.23
VCAN-212ENST00000515397 CABP2Q9NPB3 220 aa16.46■□□□□ 0.23
VCAN-212ENST00000515397 CENPJQ9HC77 1338 aaPredicted RBP16.45■□□□□ 0.22
VCAN-212ENST00000515397 QTRT2Q9H974 415 aaKnown RBP16.45■□□□□ 0.22
VCAN-212ENST00000515397 ROCK2O75116 1388 aaKnown RBP16.45■□□□□ 0.22
VCAN-212ENST00000515397 ARHGEF28Q8N1W1 1705 aaKnown RBP16.45■□□□□ 0.22
VCAN-212ENST00000515397 USP32Q8NFA0 1604 aa16.45■□□□□ 0.22
VCAN-212ENST00000515397 TONSLQ96HA7 1378 aa16.44■□□□□ 0.22
VCAN-212ENST00000515397 PAK3O75914 559 aaPredicted RBP16.44■□□□□ 0.22
VCAN-212ENST00000515397 SRPK2P78362 688 aaKnown RBP16.44■□□□□ 0.22
VCAN-212ENST00000515397 ANKARQ7Z5J8 1434 aa16.44■□□□□ 0.22
VCAN-212ENST00000515397 RXRBP28702 533 aa16.42■□□□□ 0.22
VCAN-212ENST00000515397 HAP1P54257 671 aaPredicted RBP16.42■□□□□ 0.22
VCAN-212ENST00000515397 ADGRB2O60241 1585 aa16.42■□□□□ 0.22
VCAN-212ENST00000515397 KIAA1210Q9ULL0 1709 aa16.42■□□□□ 0.22
VCAN-212ENST00000515397 TULP4Q9NRJ4 1543 aa16.41■□□□□ 0.22
VCAN-212ENST00000515397 NUTM2GQ5VZR2 741 aa16.41■□□□□ 0.22
VCAN-212ENST00000515397 USP21Q9UK80 565 aa16.41■□□□□ 0.22
VCAN-212ENST00000515397 GPRASP1Q5JY77 1395 aa16.4■□□□□ 0.22
VCAN-212ENST00000515397 CARD11Q9BXL7 1154 aa16.4■□□□□ 0.22
VCAN-212ENST00000515397 CCDC61Q9Y6R9 512 aa16.4■□□□□ 0.22
VCAN-212ENST00000515397 EIF3AQ14152 1382 aaKnown RBP16.39■□□□□ 0.21
VCAN-212ENST00000515397 TNS3Q68CZ2 1445 aa16.39■□□□□ 0.21
VCAN-212ENST00000515397 KIF1AQ12756 1690 aa16.39■□□□□ 0.21
VCAN-212ENST00000515397 ACEP12821 1306 aa16.39■□□□□ 0.21
VCAN-212ENST00000515397 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
VCAN-212ENST00000515397 ATP7BP35670 1465 aa16.38■□□□□ 0.21
VCAN-212ENST00000515397 FNBP4Q8N3X1 1017 aaPredicted RBP16.38■□□□□ 0.21
VCAN-212ENST00000515397 TRPM1Q7Z4N2 1603 aa16.37■□□□□ 0.21
VCAN-212ENST00000515397 CABP1Q9NZU7 370 aa16.37■□□□□ 0.21
VCAN-212ENST00000515397 COL22A1Q8NFW1 1626 aaPredicted RBP16.35■□□□□ 0.21
VCAN-212ENST00000515397 PLEKHG3A1L390 1219 aa16.35■□□□□ 0.21
VCAN-212ENST00000515397 FAM83GA6ND36 823 aa16.35■□□□□ 0.21
VCAN-212ENST00000515397 RBM6P78332 1123 aaKnown RBP16.35■□□□□ 0.21
VCAN-212ENST00000515397 ARHGEF10O15013 1369 aa16.34■□□□□ 0.21
VCAN-212ENST00000515397 TRPC5Q9UL62 973 aaPredicted RBP16.33■□□□□ 0.2
VCAN-212ENST00000515397 EVC2Q86UK5 1308 aa16.33■□□□□ 0.2
VCAN-212ENST00000515397 PPIP5K1Q6PFW1 1433 aa16.33■□□□□ 0.2
VCAN-212ENST00000515397 BCL9LQ86UU0 1499 aa16.32■□□□□ 0.2
VCAN-212ENST00000515397 UNC5CLQ8IV45 518 aa16.31■□□□□ 0.2
VCAN-212ENST00000515397 QRICH2Q9H0J4 1663 aa16.3■□□□□ 0.2
VCAN-212ENST00000515397 POLR3AO14802 1390 aaPredicted RBP16.3■□□□□ 0.2
VCAN-212ENST00000515397 ZC3H6P61129 1189 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms