RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 ATAD2Q6PL18 1390 aa23.59■■□□□ 1.37
PDLIM3-211ENST00000515261 FNBP4Q8N3X1 1017 aaPredicted RBP23.58■■□□□ 1.37
PDLIM3-211ENST00000515261 ESCO1Q5FWF5 840 aa23.57■■□□□ 1.36
PDLIM3-211ENST00000515261 NPHP3Q7Z494 1330 aa23.56■■□□□ 1.36
PDLIM3-211ENST00000515261 CDC42BPGQ6DT37 1551 aa23.55■■□□□ 1.36
PDLIM3-211ENST00000515261 MARF1Q9Y4F3 1742 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-211ENST00000515261 ATRNO75882 1429 aa23.53■■□□□ 1.36
PDLIM3-211ENST00000515261 MYOM2P54296 1465 aa23.51■■□□□ 1.35
PDLIM3-211ENST00000515261 FOXO3O43524 673 aa23.51■■□□□ 1.35
PDLIM3-211ENST00000515261 PXDNQ92626 1479 aa23.5■■□□□ 1.35
PDLIM3-211ENST00000515261 XPCQ01831 940 aaPredicted RBP23.49■■□□□ 1.35
PDLIM3-211ENST00000515261 FOXD1Q16676 465 aa23.49■■□□□ 1.35
PDLIM3-211ENST00000515261 LRPPRCP42704 1394 aaKnown RBP23.49■■□□□ 1.35
PDLIM3-211ENST00000515261 STK26Q9P289 416 aa23.48■■□□□ 1.35
PDLIM3-211ENST00000515261 NUTM2FA1L443 756 aa23.47■■□□□ 1.35
PDLIM3-211ENST00000515261 ADGRF5Q8IZF2 1346 aa23.47■■□□□ 1.35
PDLIM3-211ENST00000515261 CCDC144AA2RUR9 1427 aa23.46■■□□□ 1.35
PDLIM3-211ENST00000515261 RGL3Q3MIN7 710 aa23.46■■□□□ 1.35
PDLIM3-211ENST00000515261 WAPLQ7Z5K2 1190 aa23.46■■□□□ 1.35
PDLIM3-211ENST00000515261 BCL9LQ86UU0 1499 aa23.46■■□□□ 1.35
PDLIM3-211ENST00000515261 EP400Q96L91 3159 aa23.46■■□□□ 1.35
PDLIM3-211ENST00000515261 SRCAPQ6ZRS2 3230 aa23.45■■□□□ 1.34
PDLIM3-211ENST00000515261 IFT172Q9UG01 1749 aa23.45■■□□□ 1.34
PDLIM3-211ENST00000515261 TECPR2O15040 1411 aa23.44■■□□□ 1.34
PDLIM3-211ENST00000515261 KNDC1Q76NI1 1749 aa23.44■■□□□ 1.34
PDLIM3-211ENST00000515261 GJD4Q96KN9 370 aaPredicted RBP23.43■■□□□ 1.34
PDLIM3-211ENST00000515261 ZRANB1Q9UGI0 708 aa23.43■■□□□ 1.34
PDLIM3-211ENST00000515261 ANKRD30BQ9BXX2 1392 aa23.42■■□□□ 1.34
PDLIM3-211ENST00000515261 CCDC125Q86Z20 511 aa23.42■■□□□ 1.34
PDLIM3-211ENST00000515261 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-211ENST00000515261 TMEM132EQ6IEE7 984 aa23.41■■□□□ 1.34
PDLIM3-211ENST00000515261 FMN2Q9NZ56 1722 aa23.41■■□□□ 1.34
PDLIM3-211ENST00000515261 KIF1AQ12756 1690 aa23.41■■□□□ 1.34
PDLIM3-211ENST00000515261 ABCC11Q96J66 1382 aa23.4■■□□□ 1.34
PDLIM3-211ENST00000515261 SPATA31E1Q6ZUB1 1445 aa23.4■■□□□ 1.34
PDLIM3-211ENST00000515261 PLEKHH1Q9ULM0 1364 aa23.39■■□□□ 1.33
PDLIM3-211ENST00000515261 SPATA31A3Q5VYP0 1347 aa23.37■■□□□ 1.33
PDLIM3-211ENST00000515261 UNC5CLQ8IV45 518 aa23.37■■□□□ 1.33
PDLIM3-211ENST00000515261 PIK3C2GO75747 1445 aa23.36■■□□□ 1.33
PDLIM3-211ENST00000515261 YTHDC2Q9H6S0 1430 aaKnown RBP23.35■■□□□ 1.33
PDLIM3-211ENST00000515261 RGPD8O14715 1765 aaPredicted RBP23.35■■□□□ 1.33
PDLIM3-211ENST00000515261 KRT28Q7Z3Y7 464 aa23.35■■□□□ 1.33
PDLIM3-211ENST00000515261 MPHOSPH9Q99550 1183 aa23.35■■□□□ 1.33
PDLIM3-211ENST00000515261 SLIT2O94813 1529 aa23.34■■□□□ 1.33
PDLIM3-211ENST00000515261 USP32Q8NFA0 1604 aa23.34■■□□□ 1.33
PDLIM3-211ENST00000515261 RALGAPBQ86X10 1494 aa23.34■■□□□ 1.33
PDLIM3-211ENST00000515261 GLI3P10071 1580 aa23.34■■□□□ 1.33
PDLIM3-211ENST00000515261 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.33
PDLIM3-211ENST00000515261 BRWD3Q6RI45 1802 aa23.31■■□□□ 1.32
PDLIM3-211ENST00000515261 PSME1Q06323 249 aa23.3■■□□□ 1.32
PDLIM3-211ENST00000515261 SIRT1Q96EB6 747 aa23.3■■□□□ 1.32
PDLIM3-211ENST00000515261 BLMP54132 1417 aaPredicted RBP23.29■■□□□ 1.32
PDLIM3-211ENST00000515261 PHF8Q9UPP1 1060 aa23.29■■□□□ 1.32
PDLIM3-211ENST00000515261 TNS3Q68CZ2 1445 aa23.28■■□□□ 1.32
PDLIM3-211ENST00000515261 PLEKHG5O94827 1062 aa23.27■■□□□ 1.32
PDLIM3-211ENST00000515261 C14orf93Q9H972 538 aaKnown RBP23.27■■□□□ 1.32
PDLIM3-211ENST00000515261 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.31
PDLIM3-211ENST00000515261 PLCH1Q4KWH8 1693 aa23.26■■□□□ 1.31
PDLIM3-211ENST00000515261 NWD2Q9ULI1 1742 aa23.26■■□□□ 1.31
PDLIM3-211ENST00000515261 CABLES1Q8TDN4 633 aa23.26■■□□□ 1.31
PDLIM3-211ENST00000515261 SF3B2Q13435 895 aaKnown RBP23.25■■□□□ 1.31
PDLIM3-211ENST00000515261 LMOD2Q6P5Q4 547 aa23.25■■□□□ 1.31
PDLIM3-211ENST00000515261 SEPT12Q8IYM1 358 aa23.25■■□□□ 1.31
PDLIM3-211ENST00000515261 CCDC9Q9Y3X0 531 aaKnown RBP23.25■■□□□ 1.31
PDLIM3-211ENST00000515261 VPS72Q15906 364 aa23.24■■□□□ 1.31
PDLIM3-211ENST00000515261 CFAP70Q5T0N1 1121 aa23.24■■□□□ 1.31
PDLIM3-211ENST00000515261 ABCA3Q99758 1704 aa23.24■■□□□ 1.31
PDLIM3-211ENST00000515261 SAFB2Q14151 953 aaKnown RBP eCLIP23.23■■□□□ 1.31
PDLIM3-211ENST00000515261 SBNO1A3KN83 1393 aa23.23■■□□□ 1.31
PDLIM3-211ENST00000515261 NRXN1Q9ULB1 1477 aa23.23■■□□□ 1.31
PDLIM3-211ENST00000515261 PRAM1Q96QH2 718 aa23.22■■□□□ 1.31
PDLIM3-211ENST00000515261 ARHGEF10O15013 1369 aa23.22■■□□□ 1.31
PDLIM3-211ENST00000515261 DEFB132Q7Z7B7 95 aa23.21■■□□□ 1.31
PDLIM3-211ENST00000515261 ACIN1Q9UKV3 1341 aaKnown RBP23.19■■□□□ 1.3
PDLIM3-211ENST00000515261 POGKQ9P215 609 aa23.19■■□□□ 1.3
PDLIM3-211ENST00000515261 ONECUT3O60422 494 aaPredicted RBP23.18■■□□□ 1.3
PDLIM3-211ENST00000515261 KRT27Q7Z3Y8 459 aa23.18■■□□□ 1.3
PDLIM3-211ENST00000515261 PMFBP1Q8TBY8 1022 aa23.18■■□□□ 1.3
PDLIM3-211ENST00000515261 A0A0G2JS52 829 aa23.16■■□□□ 1.3
PDLIM3-211ENST00000515261 MYT1Q01538 1121 aa23.16■■□□□ 1.3
PDLIM3-211ENST00000515261 DLC1Q96QB1 1528 aa23.16■■□□□ 1.3
PDLIM3-211ENST00000515261 ANKARQ7Z5J8 1434 aa23.16■■□□□ 1.3
PDLIM3-211ENST00000515261 FAM83GA6ND36 823 aa23.15■■□□□ 1.3
PDLIM3-211ENST00000515261 ADGRB2O60241 1585 aa23.14■■□□□ 1.29
PDLIM3-211ENST00000515261 NRAPQ86VF7 1730 aa23.13■■□□□ 1.29
PDLIM3-211ENST00000515261 TRPM3Q9HCF6 1732 aaPredicted RBP23.12■■□□□ 1.29
PDLIM3-211ENST00000515261 GPRASP1Q5JY77 1395 aa23.11■■□□□ 1.29
PDLIM3-211ENST00000515261 FAM98CQ17RN3 349 aaKnown RBP23.1■■□□□ 1.29
PDLIM3-211ENST00000515261 HIRIP3Q9BW71 556 aaPredicted RBP23.1■■□□□ 1.29
PDLIM3-211ENST00000515261 BTG4Q9NY30 223 aa23.1■■□□□ 1.29
PDLIM3-211ENST00000515261 ALS2Q96Q42 1657 aa23.09■■□□□ 1.29
PDLIM3-211ENST00000515261 COL14A1Q05707 1796 aaKnown RBP23.09■■□□□ 1.29
PDLIM3-211ENST00000515261 BAG6P46379 1132 aa23.09■■□□□ 1.29
PDLIM3-211ENST00000515261 TRAK1Q9UPV9 953 aa23.09■■□□□ 1.29
PDLIM3-211ENST00000515261 EIF3AQ14152 1382 aaKnown RBP23.09■■□□□ 1.29
PDLIM3-211ENST00000515261 ADGRB1O14514 1584 aa23.07■■□□□ 1.28
PDLIM3-211ENST00000515261 LRP5O75197 1615 aa23.07■■□□□ 1.28
PDLIM3-211ENST00000515261 MINK1Q8N4C8 1332 aaPredicted RBP23.07■■□□□ 1.28
PDLIM3-211ENST00000515261 TULP4Q9NRJ4 1543 aa23.05■■□□□ 1.28
PDLIM3-211ENST00000515261 RGPD1P0DJD0 1748 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms