RNA–Protein interactions for RNA: ENST00000514536.5

USP46-209, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 1,589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-209ENST00000514536 NBPF8Q3BBV2 869 aa20■□□□□ 0.79
USP46-209ENST00000514536 SIPA1L2Q9P2F8 1722 aaPredicted RBP20■□□□□ 0.79
USP46-209ENST00000514536 MED1Q15648 1581 aaPredicted RBP20■□□□□ 0.79
USP46-209ENST00000514536 FAM135BQ49AJ0 1406 aa20■□□□□ 0.79
USP46-209ENST00000514536 DCCP43146 1447 aa19.98■□□□□ 0.79
USP46-209ENST00000514536 KNDC1Q76NI1 1749 aa19.96■□□□□ 0.79
USP46-209ENST00000514536 DLC1Q96QB1 1528 aa19.95■□□□□ 0.78
USP46-209ENST00000514536 NALCNQ8IZF0 1738 aa19.94■□□□□ 0.78
USP46-209ENST00000514536 MST1RQ04912 1400 aa19.94■□□□□ 0.78
USP46-209ENST00000514536 KIAA1210Q9ULL0 1709 aa19.93■□□□□ 0.78
USP46-209ENST00000514536 NUTM2FA1L443 756 aa19.92■□□□□ 0.78
USP46-209ENST00000514536 BRINP3Q76B58 766 aa19.92■□□□□ 0.78
USP46-209ENST00000514536 MINK1Q8N4C8 1332 aaPredicted RBP19.92■□□□□ 0.78
USP46-209ENST00000514536 ROCK2O75116 1388 aaKnown RBP19.91■□□□□ 0.78
USP46-209ENST00000514536 HIRIP3Q9BW71 556 aaPredicted RBP19.91■□□□□ 0.78
USP46-209ENST00000514536 TIMELESSQ9UNS1 1208 aa19.91■□□□□ 0.78
USP46-209ENST00000514536 C1orf167Q5SNV9 1468 aa19.9■□□□□ 0.78
USP46-209ENST00000514536 ORAI2Q96SN7 254 aa19.9■□□□□ 0.78
USP46-209ENST00000514536 ROBO1Q9Y6N7 1651 aa19.9■□□□□ 0.78
USP46-209ENST00000514536 TRPM1Q7Z4N2 1603 aa19.87■□□□□ 0.77
USP46-209ENST00000514536 ESCO1Q5FWF5 840 aa19.87■□□□□ 0.77
USP46-209ENST00000514536 CDC42BPGQ6DT37 1551 aa19.86■□□□□ 0.77
USP46-209ENST00000514536 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
USP46-209ENST00000514536 CARD11Q9BXL7 1154 aa19.86■□□□□ 0.77
USP46-209ENST00000514536 DDX17Q92841 729 aaKnown RBP19.85■□□□□ 0.77
USP46-209ENST00000514536 CENPJQ9HC77 1338 aaPredicted RBP19.85■□□□□ 0.77
USP46-209ENST00000514536 WASLO00401 505 aaPredicted RBP19.84■□□□□ 0.77
USP46-209ENST00000514536 GPRASP1Q5JY77 1395 aa19.84■□□□□ 0.77
USP46-209ENST00000514536 ARHGEF28Q8N1W1 1705 aaKnown RBP19.83■□□□□ 0.76
USP46-209ENST00000514536 RALGAPBQ86X10 1494 aa19.81■□□□□ 0.76
USP46-209ENST00000514536 RGS17Q9UGC6 210 aaPredicted RBP19.81■□□□□ 0.76
USP46-209ENST00000514536 CDK19Q9BWU1 502 aa19.8■□□□□ 0.76
USP46-209ENST00000514536 FOXO3O43524 673 aa19.78■□□□□ 0.76
USP46-209ENST00000514536 PHF8Q9UPP1 1060 aa19.78■□□□□ 0.76
USP46-209ENST00000514536 FMN2Q9NZ56 1722 aa19.78■□□□□ 0.76
USP46-209ENST00000514536 EIF3AQ14152 1382 aaKnown RBP19.77■□□□□ 0.76
USP46-209ENST00000514536 ADGRB2O60241 1585 aa19.77■□□□□ 0.76
USP46-209ENST00000514536 PRR36Q9H6K5 1346 aa19.77■□□□□ 0.76
USP46-209ENST00000514536 PHLPP1O60346 1717 aa19.76■□□□□ 0.75
USP46-209ENST00000514536 AHDC1Q5TGY3 1603 aaPredicted RBP19.76■□□□□ 0.75
USP46-209ENST00000514536 XPCQ01831 940 aaPredicted RBP19.75■□□□□ 0.75
USP46-209ENST00000514536 PMFBP1Q8TBY8 1022 aa19.75■□□□□ 0.75
USP46-209ENST00000514536 LRRC59Q96AG4 307 aaKnown RBP19.75■□□□□ 0.75
USP46-209ENST00000514536 NUDT16Q96DE0 195 aaKnown RBP19.75■□□□□ 0.75
USP46-209ENST00000514536 ANKARQ7Z5J8 1434 aa19.75■□□□□ 0.75
USP46-209ENST00000514536 NPHP3Q7Z494 1330 aa19.75■□□□□ 0.75
USP46-209ENST00000514536 SOS2Q07890 1332 aaPredicted RBP19.74■□□□□ 0.75
USP46-209ENST00000514536 SRPK2P78362 688 aaKnown RBP19.74■□□□□ 0.75
USP46-209ENST00000514536 CABP2Q9NPB3 220 aa19.73■□□□□ 0.75
USP46-209ENST00000514536 JCADQ9P266 1359 aa19.73■□□□□ 0.75
USP46-209ENST00000514536 TULP4Q9NRJ4 1543 aa19.72■□□□□ 0.75
USP46-209ENST00000514536 COL16A1Q07092 1604 aaPredicted RBP19.72■□□□□ 0.75
USP46-209ENST00000514536 EVC2Q86UK5 1308 aa19.72■□□□□ 0.75
USP46-209ENST00000514536 KRT28Q7Z3Y7 464 aa19.71■□□□□ 0.75
USP46-209ENST00000514536 ST20-MTHFSA0A0A6YYL1 179 aa19.7■□□□□ 0.74
USP46-209ENST00000514536 PSME1Q06323 249 aa19.7■□□□□ 0.74
USP46-209ENST00000514536 CCDC61Q9Y6R9 512 aa19.7■□□□□ 0.74
USP46-209ENST00000514536 NHSL1Q5SYE7 1610 aa19.7■□□□□ 0.74
USP46-209ENST00000514536 USP32Q8NFA0 1604 aa19.7■□□□□ 0.74
USP46-209ENST00000514536 QRICH2Q9H0J4 1663 aa19.69■□□□□ 0.74
USP46-209ENST00000514536 RGPD8O14715 1765 aaPredicted RBP19.69■□□□□ 0.74
USP46-209ENST00000514536 NGDNQ8NEJ9 315 aaKnown RBP19.68■□□□□ 0.74
USP46-209ENST00000514536 POTEAQ6S8J7 498 aa19.67■□□□□ 0.74
USP46-209ENST00000514536 ATP7BP35670 1465 aa19.67■□□□□ 0.74
USP46-209ENST00000514536 USP47Q96K76 1375 aa19.66■□□□□ 0.74
USP46-209ENST00000514536 PXDNQ92626 1479 aa19.66■□□□□ 0.74
USP46-209ENST00000514536 SBNO2Q9Y2G9 1366 aa19.65■□□□□ 0.74
USP46-209ENST00000514536 PLEKHG3A1L390 1219 aa19.65■□□□□ 0.74
USP46-209ENST00000514536 NUTM2BA6NNL0 878 aaPredicted RBP19.65■□□□□ 0.74
USP46-209ENST00000514536 NUTM2EB1AL46 878 aaPredicted RBP19.65■□□□□ 0.74
USP46-209ENST00000514536 NUTM2AQ8IVF1 878 aaPredicted RBP19.65■□□□□ 0.74
USP46-209ENST00000514536 TESK2Q96S53 571 aa19.65■□□□□ 0.74
USP46-209ENST00000514536 SPATA31A6Q5VVP1 1343 aa19.65■□□□□ 0.74
USP46-209ENST00000514536 KIF1AQ12756 1690 aa19.64■□□□□ 0.74
USP46-209ENST00000514536 PNPLA6Q8IY17 1366 aa19.64■□□□□ 0.74
USP46-209ENST00000514536 CABP1Q9NZU7 370 aa19.64■□□□□ 0.73
USP46-209ENST00000514536 ACEP12821 1306 aa19.63■□□□□ 0.73
USP46-209ENST00000514536 SPATA31A3Q5VYP0 1347 aa19.63■□□□□ 0.73
USP46-209ENST00000514536 PPIP5K1Q6PFW1 1433 aa19.61■□□□□ 0.73
USP46-209ENST00000514536 LMOD2Q6P5Q4 547 aa19.61■□□□□ 0.73
USP46-209ENST00000514536 SBNO1A3KN83 1393 aa19.6■□□□□ 0.73
USP46-209ENST00000514536 SLC24A1O60721 1099 aa19.59■□□□□ 0.73
USP46-209ENST00000514536 PAK3O75914 559 aaPredicted RBP19.59■□□□□ 0.73
USP46-209ENST00000514536 POLR3AO14802 1390 aaPredicted RBP19.58■□□□□ 0.73
USP46-209ENST00000514536 MEX3CQ5U5Q3 659 aaKnown RBP19.58■□□□□ 0.73
USP46-209ENST00000514536 ATAD2Q6PL18 1390 aa19.58■□□□□ 0.72
USP46-209ENST00000514536 SHPRHQ149N8 1683 aa19.58■□□□□ 0.72
USP46-209ENST00000514536 PLEKHG5O94827 1062 aa19.57■□□□□ 0.72
USP46-209ENST00000514536 LRP6O75581 1613 aa19.57■□□□□ 0.72
USP46-209ENST00000514536 EIF4G2P78344 907 aaKnown RBP eCLIP19.57■□□□□ 0.72
USP46-209ENST00000514536 TMF1P82094 1093 aa19.57■□□□□ 0.72
USP46-209ENST00000514536 TNS3Q68CZ2 1445 aa19.56■□□□□ 0.72
USP46-209ENST00000514536 TMC1Q8TDI8 760 aa19.56■□□□□ 0.72
USP46-209ENST00000514536 PUS7Q96PZ0 661 aaKnown RBP19.56■□□□□ 0.72
USP46-209ENST00000514536 ITSN1Q15811 1721 aa19.55■□□□□ 0.72
USP46-209ENST00000514536 ADAMTS2O95450 1211 aa19.55■□□□□ 0.72
USP46-209ENST00000514536 HSPA5P11021 654 aaKnown RBP19.55■□□□□ 0.72
USP46-209ENST00000514536 TOPAZ1Q8N9V7 1692 aa19.55■□□□□ 0.72
USP46-209ENST00000514536 CABLES1Q8TDN4 633 aa19.53■□□□□ 0.72
USP46-209ENST00000514536 SLC12A5Q9H2X9 1139 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms