RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 NBPF8Q3BBV2 869 aa11.85□□□□□ -0.51
CCL28-204ENST00000514421 ADGRL3Q9HAR2 1447 aa11.85□□□□□ -0.51
CCL28-204ENST00000514421 PLEKHH1Q9ULM0 1364 aa11.84□□□□□ -0.51
CCL28-204ENST00000514421 XRN1Q8IZH2 1706 aaKnown RBP11.84□□□□□ -0.51
CCL28-204ENST00000514421 SAFB2Q14151 953 aaKnown RBP eCLIP11.84□□□□□ -0.51
CCL28-204ENST00000514421 DCCP43146 1447 aa11.84□□□□□ -0.51
CCL28-204ENST00000514421 XIRP1Q702N8 1843 aaKnown RBP11.82□□□□□ -0.52
CCL28-204ENST00000514421 BRINP3Q76B58 766 aa11.82□□□□□ -0.52
CCL28-204ENST00000514421 SETD1AO15047 1707 aaKnown RBP11.82□□□□□ -0.52
CCL28-204ENST00000514421 ASXL1Q8IXJ9 1541 aa11.81□□□□□ -0.52
CCL28-204ENST00000514421 ADGRB1O14514 1584 aa11.81□□□□□ -0.52
CCL28-204ENST00000514421 ORAI2Q96SN7 254 aa11.81□□□□□ -0.52
CCL28-204ENST00000514421 NUTM2FA1L443 756 aa11.8□□□□□ -0.52
CCL28-204ENST00000514421 ESCO1Q5FWF5 840 aa11.8□□□□□ -0.52
CCL28-204ENST00000514421 MINK1Q8N4C8 1332 aaPredicted RBP11.8□□□□□ -0.52
CCL28-204ENST00000514421 MST1RQ04912 1400 aa11.79□□□□□ -0.52
CCL28-204ENST00000514421 WASLO00401 505 aaPredicted RBP11.79□□□□□ -0.52
CCL28-204ENST00000514421 C1QBPQ07021 282 aaKnown RBP11.79□□□□□ -0.52
CCL28-204ENST00000514421 HIRIP3Q9BW71 556 aaPredicted RBP11.79□□□□□ -0.52
CCL28-204ENST00000514421 CARD11Q9BXL7 1154 aa11.79□□□□□ -0.52
CCL28-204ENST00000514421 DLC1Q96QB1 1528 aa11.79□□□□□ -0.52
CCL28-204ENST00000514421 ROCK2O75116 1388 aaKnown RBP11.79□□□□□ -0.52
CCL28-204ENST00000514421 LAMC1P11047 1609 aa11.78□□□□□ -0.52
CCL28-204ENST00000514421 C1orf167Q5SNV9 1468 aa11.78□□□□□ -0.52
CCL28-204ENST00000514421 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.78□□□□□ -0.52
CCL28-204ENST00000514421 CENPJQ9HC77 1338 aaPredicted RBP11.78□□□□□ -0.52
CCL28-204ENST00000514421 CDK19Q9BWU1 502 aa11.77□□□□□ -0.53
CCL28-204ENST00000514421 LRRC59Q96AG4 307 aaKnown RBP11.76□□□□□ -0.53
CCL28-204ENST00000514421 GPRASP1Q5JY77 1395 aa11.76□□□□□ -0.53
CCL28-204ENST00000514421 FOXO3O43524 673 aa11.75□□□□□ -0.53
CCL28-204ENST00000514421 PHF8Q9UPP1 1060 aa11.75□□□□□ -0.53
CCL28-204ENST00000514421 DDX17Q92841 729 aaKnown RBP11.74□□□□□ -0.53
CCL28-204ENST00000514421 NUDT16Q96DE0 195 aaKnown RBP11.74□□□□□ -0.53
CCL28-204ENST00000514421 KIAA1210Q9ULL0 1709 aa11.74□□□□□ -0.53
CCL28-204ENST00000514421 EIF3AQ14152 1382 aaKnown RBP11.73□□□□□ -0.53
CCL28-204ENST00000514421 KNDC1Q76NI1 1749 aa11.73□□□□□ -0.53
CCL28-204ENST00000514421 NPHP3Q7Z494 1330 aa11.73□□□□□ -0.53
CCL28-204ENST00000514421 JCADQ9P266 1359 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 SOS2Q07890 1332 aaPredicted RBP11.72□□□□□ -0.53
CCL28-204ENST00000514421 ZNF316A6NFI3 1004 aaPredicted RBP11.72□□□□□ -0.53
CCL28-204ENST00000514421 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 PSME1Q06323 249 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 KRT28Q7Z3Y7 464 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 PMFBP1Q8TBY8 1022 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 CCDC61Q9Y6R9 512 aa11.72□□□□□ -0.53
CCL28-204ENST00000514421 EVC2Q86UK5 1308 aa11.71□□□□□ -0.53
CCL28-204ENST00000514421 SRPK2P78362 688 aaKnown RBP11.71□□□□□ -0.53
CCL28-204ENST00000514421 ROBO1Q9Y6N7 1651 aa11.71□□□□□ -0.54
CCL28-204ENST00000514421 CDC42BPGQ6DT37 1551 aa11.71□□□□□ -0.54
CCL28-204ENST00000514421 ANKARQ7Z5J8 1434 aa11.7□□□□□ -0.54
CCL28-204ENST00000514421 PRR36Q9H6K5 1346 aa11.7□□□□□ -0.54
CCL28-204ENST00000514421 NALCNQ8IZF0 1738 aa11.7□□□□□ -0.54
CCL28-204ENST00000514421 PLEKHG3A1L390 1219 aa11.7□□□□□ -0.54
CCL28-204ENST00000514421 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
CCL28-204ENST00000514421 NGDNQ8NEJ9 315 aaKnown RBP11.7□□□□□ -0.54
CCL28-204ENST00000514421 CABP2Q9NPB3 220 aa11.7□□□□□ -0.54
CCL28-204ENST00000514421 ST20-MTHFSA0A0A6YYL1 179 aa11.69□□□□□ -0.54
CCL28-204ENST00000514421 XPCQ01831 940 aaPredicted RBP11.69□□□□□ -0.54
CCL28-204ENST00000514421 RALGAPBQ86X10 1494 aa11.69□□□□□ -0.54
CCL28-204ENST00000514421 SPATA31A6Q5VVP1 1343 aa11.67□□□□□ -0.54
CCL28-204ENST00000514421 CABP1Q9NZU7 370 aa11.67□□□□□ -0.54
CCL28-204ENST00000514421 TRPM1Q7Z4N2 1603 aa11.67□□□□□ -0.54
CCL28-204ENST00000514421 PUS7Q96PZ0 661 aaKnown RBP11.66□□□□□ -0.54
CCL28-204ENST00000514421 AHDC1Q5TGY3 1603 aaPredicted RBP11.66□□□□□ -0.54
CCL28-204ENST00000514421 ACEP12821 1306 aa11.65□□□□□ -0.54
CCL28-204ENST00000514421 SPATA31A3Q5VYP0 1347 aa11.65□□□□□ -0.54
CCL28-204ENST00000514421 NUTM2BA6NNL0 878 aaPredicted RBP11.65□□□□□ -0.54
CCL28-204ENST00000514421 NUTM2EB1AL46 878 aaPredicted RBP11.65□□□□□ -0.54
CCL28-204ENST00000514421 NUTM2AQ8IVF1 878 aaPredicted RBP11.65□□□□□ -0.54
CCL28-204ENST00000514421 TESK2Q96S53 571 aa11.65□□□□□ -0.54
CCL28-204ENST00000514421 DISP3Q9P2K9 1392 aa11.65□□□□□ -0.55
CCL28-204ENST00000514421 SBNO2Q9Y2G9 1366 aa11.65□□□□□ -0.55
CCL28-204ENST00000514421 ADGRB2O60241 1585 aa11.64□□□□□ -0.55
CCL28-204ENST00000514421 LMOD2Q6P5Q4 547 aa11.64□□□□□ -0.55
CCL28-204ENST00000514421 ZNF692Q9BU19 519 aaPredicted RBP11.64□□□□□ -0.55
CCL28-204ENST00000514421 TULP4Q9NRJ4 1543 aa11.64□□□□□ -0.55
CCL28-204ENST00000514421 PHLPP1O60346 1717 aa11.63□□□□□ -0.55
CCL28-204ENST00000514421 ARHGEF28Q8N1W1 1705 aaKnown RBP11.63□□□□□ -0.55
CCL28-204ENST00000514421 FMN2Q9NZ56 1722 aa11.63□□□□□ -0.55
CCL28-204ENST00000514421 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
CCL28-204ENST00000514421 EIF4G2P78344 907 aaKnown RBP eCLIP11.63□□□□□ -0.55
CCL28-204ENST00000514421 TMF1P82094 1093 aa11.63□□□□□ -0.55
CCL28-204ENST00000514421 MEX3CQ5U5Q3 659 aaKnown RBP11.63□□□□□ -0.55
CCL28-204ENST00000514421 SBNO1A3KN83 1393 aa11.63□□□□□ -0.55
CCL28-204ENST00000514421 PNPLA6Q8IY17 1366 aa11.63□□□□□ -0.55
CCL28-204ENST00000514421 USP47Q96K76 1375 aa11.62□□□□□ -0.55
CCL28-204ENST00000514421 COL16A1Q07092 1604 aaPredicted RBP11.61□□□□□ -0.55
CCL28-204ENST00000514421 CDCA8Q53HL2 280 aa11.61□□□□□ -0.55
CCL28-204ENST00000514421 DIEXFQ68CQ4 756 aaKnown RBP11.61□□□□□ -0.55
CCL28-204ENST00000514421 TMC1Q8TDI8 760 aa11.61□□□□□ -0.55
CCL28-204ENST00000514421 POLR3AO14802 1390 aaPredicted RBP11.61□□□□□ -0.55
CCL28-204ENST00000514421 ATAD2Q6PL18 1390 aa11.61□□□□□ -0.55
CCL28-204ENST00000514421 ATP7BP35670 1465 aa11.61□□□□□ -0.55
CCL28-204ENST00000514421 PXDNQ92626 1479 aa11.61□□□□□ -0.55
CCL28-204ENST00000514421 ADAMTS2O95450 1211 aa11.6□□□□□ -0.55
CCL28-204ENST00000514421 PPIP5K1Q6PFW1 1433 aa11.6□□□□□ -0.55
CCL28-204ENST00000514421 ARHGEF10O15013 1369 aa11.59□□□□□ -0.55
CCL28-204ENST00000514421 HSPA5P11021 654 aaKnown RBP11.59□□□□□ -0.55
CCL28-204ENST00000514421 NGLY1Q96IV0 654 aa11.59□□□□□ -0.55
CCL28-204ENST00000514421 SLC12A5Q9H2X9 1139 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms