RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 LAMC1P11047 1609 aa19.23■□□□□ 0.67
PDLIM3-210ENST00000514308 SIRT1Q96EB6 747 aa19.23■□□□□ 0.67
PDLIM3-210ENST00000514308 LRRC59Q96AG4 307 aaKnown RBP19.21■□□□□ 0.67
PDLIM3-210ENST00000514308 CDC42BPGQ6DT37 1551 aa19.2■□□□□ 0.66
PDLIM3-210ENST00000514308 ORAI2Q96SN7 254 aa19.2■□□□□ 0.66
PDLIM3-210ENST00000514308 KNDC1Q76NI1 1749 aa19.2■□□□□ 0.66
PDLIM3-210ENST00000514308 PLEKHH1Q9ULM0 1364 aa19.19■□□□□ 0.66
PDLIM3-210ENST00000514308 DDX17Q92841 729 aaKnown RBP19.18■□□□□ 0.66
PDLIM3-210ENST00000514308 ESCO1Q5FWF5 840 aa19.17■□□□□ 0.66
PDLIM3-210ENST00000514308 RGS17Q9UGC6 210 aaPredicted RBP19.17■□□□□ 0.66
PDLIM3-210ENST00000514308 NHSL1Q5SYE7 1610 aa19.17■□□□□ 0.66
PDLIM3-210ENST00000514308 MEX3CQ5U5Q3 659 aaKnown RBP19.16■□□□□ 0.66
PDLIM3-210ENST00000514308 PRAM1Q96QH2 718 aa19.16■□□□□ 0.66
PDLIM3-210ENST00000514308 POGKQ9P215 609 aa19.16■□□□□ 0.66
PDLIM3-210ENST00000514308 SHPRHQ149N8 1683 aa19.14■□□□□ 0.66
PDLIM3-210ENST00000514308 NUTM2FA1L443 756 aa19.14■□□□□ 0.65
PDLIM3-210ENST00000514308 ADGRB1O14514 1584 aa19.14■□□□□ 0.65
PDLIM3-210ENST00000514308 NUTM2BA6NNL0 878 aaPredicted RBP19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 NUTM2EB1AL46 878 aaPredicted RBP19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 SAFB2Q14151 953 aaKnown RBP eCLIP19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 NUTM2AQ8IVF1 878 aaPredicted RBP19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 TRAK1Q9UPV9 953 aa19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 SOS2Q07890 1332 aaPredicted RBP19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 NPHP3Q7Z494 1330 aa19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 DLC1Q96QB1 1528 aa19.13■□□□□ 0.65
PDLIM3-210ENST00000514308 LRP6O75581 1613 aa19.12■□□□□ 0.65
PDLIM3-210ENST00000514308 PNPLA6Q8IY17 1366 aa19.11■□□□□ 0.65
PDLIM3-210ENST00000514308 FOXO3O43524 673 aa19.1■□□□□ 0.65
PDLIM3-210ENST00000514308 POTEAQ6S8J7 498 aa19.09■□□□□ 0.65
PDLIM3-210ENST00000514308 ZNF772Q68DY9 489 aaPredicted RBP19.08■□□□□ 0.64
PDLIM3-210ENST00000514308 FMN2Q9NZ56 1722 aa19.06■□□□□ 0.64
PDLIM3-210ENST00000514308 XPCQ01831 940 aaPredicted RBP19.05■□□□□ 0.64
PDLIM3-210ENST00000514308 ZEB1P37275 1124 aaPredicted RBP19.04■□□□□ 0.64
PDLIM3-210ENST00000514308 HIRIP3Q9BW71 556 aaPredicted RBP19.04■□□□□ 0.64
PDLIM3-210ENST00000514308 PHF8Q9UPP1 1060 aa19.04■□□□□ 0.64
PDLIM3-210ENST00000514308 EIF3AQ14152 1382 aaKnown RBP19.04■□□□□ 0.64
PDLIM3-210ENST00000514308 PXDNQ92626 1479 aa19.03■□□□□ 0.64
PDLIM3-210ENST00000514308 MINK1Q8N4C8 1332 aaPredicted RBP19.03■□□□□ 0.64
PDLIM3-210ENST00000514308 ANKARQ7Z5J8 1434 aa19.02■□□□□ 0.64
PDLIM3-210ENST00000514308 NEUROD1Q13562 356 aa19.02■□□□□ 0.64
PDLIM3-210ENST00000514308 L3MBTL2Q969R5 705 aa19.02■□□□□ 0.64
PDLIM3-210ENST00000514308 C8orf37Q96NL8 207 aa19.02■□□□□ 0.64
PDLIM3-210ENST00000514308 SIN3AQ96ST3 1273 aa19.02■□□□□ 0.64
PDLIM3-210ENST00000514308 ADGRB2O60241 1585 aa19.02■□□□□ 0.63
PDLIM3-210ENST00000514308 ADAMTS2O95450 1211 aa19.01■□□□□ 0.63
PDLIM3-210ENST00000514308 KIF1AQ12756 1690 aa19.01■□□□□ 0.63
PDLIM3-210ENST00000514308 AFF2P51816 1311 aa19■□□□□ 0.63
PDLIM3-210ENST00000514308 WASLO00401 505 aaPredicted RBP19■□□□□ 0.63
PDLIM3-210ENST00000514308 PSME1Q06323 249 aa19■□□□□ 0.63
PDLIM3-210ENST00000514308 KRT28Q7Z3Y7 464 aa19■□□□□ 0.63
PDLIM3-210ENST00000514308 NBPF1Q3BBV0 1214 aa18.99■□□□□ 0.63
PDLIM3-210ENST00000514308 NGLY1Q96IV0 654 aa18.99■□□□□ 0.63
PDLIM3-210ENST00000514308 KIAA1210Q9ULL0 1709 aa18.98■□□□□ 0.63
PDLIM3-210ENST00000514308 SPATA31A3Q5VYP0 1347 aa18.98■□□□□ 0.63
PDLIM3-210ENST00000514308 PMFBP1Q8TBY8 1022 aa18.96■□□□□ 0.63
PDLIM3-210ENST00000514308 COL22A1Q8NFW1 1626 aaPredicted RBP18.96■□□□□ 0.63
PDLIM3-210ENST00000514308 TULP4Q9NRJ4 1543 aa18.95■□□□□ 0.62
PDLIM3-210ENST00000514308 RXRBP28702 533 aa18.95■□□□□ 0.62
PDLIM3-210ENST00000514308 ARHGEF28Q8N1W1 1705 aaKnown RBP18.94■□□□□ 0.62
PDLIM3-210ENST00000514308 PRR36Q9H6K5 1346 aa18.94■□□□□ 0.62
PDLIM3-210ENST00000514308 SBNO1A3KN83 1393 aa18.93■□□□□ 0.62
PDLIM3-210ENST00000514308 GPRASP1Q5JY77 1395 aa18.93■□□□□ 0.62
PDLIM3-210ENST00000514308 USP32Q8NFA0 1604 aa18.92■□□□□ 0.62
PDLIM3-210ENST00000514308 TNS3Q68CZ2 1445 aa18.92■□□□□ 0.62
PDLIM3-210ENST00000514308 LMOD2Q6P5Q4 547 aa18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 NGDNQ8NEJ9 315 aaKnown RBP18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 NUDT16Q96DE0 195 aaKnown RBP18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 CDK19Q9BWU1 502 aa18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 QTRT2Q9H974 415 aaKnown RBP18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 USP21Q9UK80 565 aa18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 CENPJQ9HC77 1338 aaPredicted RBP18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 ARHGEF10O15013 1369 aa18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 RGPD8O14715 1765 aaPredicted RBP18.91■□□□□ 0.62
PDLIM3-210ENST00000514308 HAP1P54257 671 aaPredicted RBP18.9■□□□□ 0.62
PDLIM3-210ENST00000514308 FNBP4Q8N3X1 1017 aaPredicted RBP18.9■□□□□ 0.62
PDLIM3-210ENST00000514308 ROCK2O75116 1388 aaKnown RBP18.89■□□□□ 0.61
PDLIM3-210ENST00000514308 RBM6P78332 1123 aaKnown RBP18.88■□□□□ 0.61
PDLIM3-210ENST00000514308 TONSLQ96HA7 1378 aa18.88■□□□□ 0.61
PDLIM3-210ENST00000514308 ATP7BP35670 1465 aa18.88■□□□□ 0.61
PDLIM3-210ENST00000514308 TRPC5Q9UL62 973 aaPredicted RBP18.87■□□□□ 0.61
PDLIM3-210ENST00000514308 CCDC61Q9Y6R9 512 aa18.87■□□□□ 0.61
PDLIM3-210ENST00000514308 CDK12Q9NYV4 1490 aaPredicted RBP18.86■□□□□ 0.61
PDLIM3-210ENST00000514308 SRPK2P78362 688 aaKnown RBP18.86■□□□□ 0.61
PDLIM3-210ENST00000514308 PLEKHG5O94827 1062 aa18.85■□□□□ 0.61
PDLIM3-210ENST00000514308 CABLES1Q8TDN4 633 aa18.85■□□□□ 0.61
PDLIM3-210ENST00000514308 PAK3O75914 559 aaPredicted RBP18.84■□□□□ 0.61
PDLIM3-210ENST00000514308 TRPM1Q7Z4N2 1603 aa18.83■□□□□ 0.61
PDLIM3-210ENST00000514308 NBPF8Q3BBV2 869 aa18.82■□□□□ 0.6
PDLIM3-210ENST00000514308 ITSN1Q15811 1721 aa18.82■□□□□ 0.6
PDLIM3-210ENST00000514308 PLEKHG3A1L390 1219 aa18.81■□□□□ 0.6
PDLIM3-210ENST00000514308 BCL9LQ86UU0 1499 aa18.81■□□□□ 0.6
PDLIM3-210ENST00000514308 POLR3AO14802 1390 aaPredicted RBP18.81■□□□□ 0.6
PDLIM3-210ENST00000514308 ACEP12821 1306 aa18.8■□□□□ 0.6
PDLIM3-210ENST00000514308 CABP2Q9NPB3 220 aa18.8■□□□□ 0.6
PDLIM3-210ENST00000514308 ATRNO75882 1429 aa18.8■□□□□ 0.6
PDLIM3-210ENST00000514308 EVC2Q86UK5 1308 aa18.79■□□□□ 0.6
PDLIM3-210ENST00000514308 UNC5CLQ8IV45 518 aa18.79■□□□□ 0.6
PDLIM3-210ENST00000514308 TRPM3Q9HCF6 1732 aaPredicted RBP18.79■□□□□ 0.6
PDLIM3-210ENST00000514308 RGS12O14924 1447 aa18.78■□□□□ 0.6
PDLIM3-210ENST00000514308 CARD11Q9BXL7 1154 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms