RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 TMUB1Q9BVT8 246 aa11.21□□□□□ -0.61
PDLIM3-208ENST00000512380 GIGYF2Q6Y7W6 1299 aaKnown RBP11.2□□□□□ -0.62
PDLIM3-208ENST00000512380 MS4A1P11836 297 aa11.19□□□□□ -0.62
PDLIM3-208ENST00000512380 PRKD2Q9BZL6 878 aa11.18□□□□□ -0.62
PDLIM3-208ENST00000512380 V9GY48 417 aaPredicted RBP11.18□□□□□ -0.62
PDLIM3-208ENST00000512380 ADH1BP00325 375 aa11.17□□□□□ -0.62
PDLIM3-208ENST00000512380 GCGRP47871 477 aa11.17□□□□□ -0.62
PDLIM3-208ENST00000512380 POM121Q96HA1 1249 aa11.17□□□□□ -0.62
PDLIM3-208ENST00000512380 FUT2Q10981 343 aa11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 PUS10Q3MIT2 529 aaKnown RBP11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 SH3D19Q5HYK7 790 aa11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 TMCO4Q5TGY1 634 aa11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 SCUBE3Q8IX30 993 aa11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 FNBP4Q8N3X1 1017 aaPredicted RBP11.15□□□□□ -0.62
PDLIM3-208ENST00000512380 RNF223E7ERA6 249 aa11.14□□□□□ -0.63
PDLIM3-208ENST00000512380 MORN1Q5T089 497 aa11.14□□□□□ -0.63
PDLIM3-208ENST00000512380 RGS22Q8NE09 1264 aa11.14□□□□□ -0.63
PDLIM3-208ENST00000512380 CD46P15529 392 aa11.13□□□□□ -0.63
PDLIM3-208ENST00000512380 RETREG2Q8NC44 543 aa11.13□□□□□ -0.63
PDLIM3-208ENST00000512380 ATP1B4Q9UN42 357 aaPredicted RBP11.13□□□□□ -0.63
PDLIM3-208ENST00000512380 MTMR7Q9Y216 660 aa11.13□□□□□ -0.63
PDLIM3-208ENST00000512380 S1PR4O95977 384 aa11.12□□□□□ -0.63
PDLIM3-208ENST00000512380 ATP6V1AP38606 617 aa11.12□□□□□ -0.63
PDLIM3-208ENST00000512380 REPIN1Q9BWE0 567 aaKnown RBP11.12□□□□□ -0.63
PDLIM3-208ENST00000512380 GZF1Q9H116 711 aaPredicted RBP11.12□□□□□ -0.63
PDLIM3-208ENST00000512380 MDM2Q00987 491 aaPredicted RBP11.11□□□□□ -0.63
PDLIM3-208ENST00000512380 ANKLE1Q8NAG6 615 aa11.11□□□□□ -0.63
PDLIM3-208ENST00000512380 LAPTM4AQ15012 233 aa11.1□□□□□ -0.63
PDLIM3-208ENST00000512380 MFAP1P55081 439 aaKnown RBP11.09□□□□□ -0.63
PDLIM3-208ENST00000512380 THAP11Q96EK4 314 aa11.09□□□□□ -0.63
PDLIM3-208ENST00000512380 SPSB2Q99619 263 aa11.09□□□□□ -0.63
PDLIM3-208ENST00000512380 SLC6A16Q9GZN6 736 aa11.09□□□□□ -0.63
PDLIM3-208ENST00000512380 CLCN1P35523 988 aa11.08□□□□□ -0.64
PDLIM3-208ENST00000512380 GPCPD1Q9NPB8 672 aa11.08□□□□□ -0.64
PDLIM3-208ENST00000512380 SKIV2LQ15477 1246 aaKnown RBP11.07□□□□□ -0.64
PDLIM3-208ENST00000512380 EMID1Q96A84 441 aaPredicted RBP11.07□□□□□ -0.64
PDLIM3-208ENST00000512380 SLC27A5Q9Y2P5 690 aa11.07□□□□□ -0.64
PDLIM3-208ENST00000512380 SALL2Q9Y467 1007 aaPredicted RBP11.07□□□□□ -0.64
PDLIM3-208ENST00000512380 GRIPAP1Q4V328 841 aa11.06□□□□□ -0.64
PDLIM3-208ENST00000512380 IRF5Q13568 498 aa11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 FOXD4L5Q5VV16 416 aaPredicted RBP11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 PROCA1Q8NCQ7 364 aaPredicted RBP11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 FOXD4L4Q8WXT5 416 aaPredicted RBP11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 FAM217BQ9NTX9 383 aaPredicted RBP11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 COG6Q9Y2V7 657 aa11.05□□□□□ -0.64
PDLIM3-208ENST00000512380 LOC105371045A0A1W2PR82 267 aa11.04□□□□□ -0.64
PDLIM3-208ENST00000512380 PPEF1O14829 653 aaPredicted RBP11.04□□□□□ -0.64
PDLIM3-208ENST00000512380 FMNL1O95466 1100 aaPredicted RBP11.04□□□□□ -0.64
PDLIM3-208ENST00000512380 RBM25P49756 843 aaKnown RBP11.04□□□□□ -0.64
PDLIM3-208ENST00000512380 NRG2O14511 850 aaPredicted RBP11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 GFRA3O60609 400 aa11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 KDM4AO75164 1064 aa11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 SLC19A1P41440 591 aa11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 USP46P62068 366 aa11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 ZNF330Q9Y3S2 320 aaPredicted RBP11.03□□□□□ -0.64
PDLIM3-208ENST00000512380 BRICD5Q6PL45 260 aa11.02□□□□□ -0.65
PDLIM3-208ENST00000512380 Q6ZNB5 142 aa11.02□□□□□ -0.65
PDLIM3-208ENST00000512380 SPDYE5A6NIY4 337 aa11.01□□□□□ -0.65
PDLIM3-208ENST00000512380 RNF19BQ6ZMZ0 732 aa11.01□□□□□ -0.65
PDLIM3-208ENST00000512380 POLR3EQ9NVU0 708 aa11.01□□□□□ -0.65
PDLIM3-208ENST00000512380 MSS51Q4VC12 460 aa11□□□□□ -0.65
PDLIM3-208ENST00000512380 PLA2G2CQ5R387 149 aa11□□□□□ -0.65
PDLIM3-208ENST00000512380 SPRYD7Q5W111 196 aa11□□□□□ -0.65
PDLIM3-208ENST00000512380 FAM160A2Q8N612 972 aaPredicted RBP11□□□□□ -0.65
PDLIM3-208ENST00000512380 ZNF428Q96B54 188 aa11□□□□□ -0.65
PDLIM3-208ENST00000512380 SSTR3P32745 418 aaPredicted RBP10.99□□□□□ -0.65
PDLIM3-208ENST00000512380 Q3C1V9 767 aa10.99□□□□□ -0.65
PDLIM3-208ENST00000512380 LIAT1Q6ZQX7 453 aa10.99□□□□□ -0.65
PDLIM3-208ENST00000512380 HOXA2O43364 376 aa10.98□□□□□ -0.65
PDLIM3-208ENST00000512380 PRDM9Q9NQV7 894 aa10.98□□□□□ -0.65
PDLIM3-208ENST00000512380 PDZRN3Q9UPQ7 1066 aa10.98□□□□□ -0.65
PDLIM3-208ENST00000512380 IGSF3O75054 1194 aa10.97□□□□□ -0.65
PDLIM3-208ENST00000512380 TRIM67Q6ZTA4 783 aa10.97□□□□□ -0.65
PDLIM3-208ENST00000512380 ZNF598Q86UK7 904 aaKnown RBP10.97□□□□□ -0.65
PDLIM3-208ENST00000512380 BEGAINQ9BUH8 593 aa10.97□□□□□ -0.65
PDLIM3-208ENST00000512380 SNRKQ9NRH2 765 aa10.96□□□□□ -0.65
PDLIM3-208ENST00000512380 FCF1Q9Y324 198 aaKnown RBP10.96□□□□□ -0.65
PDLIM3-208ENST00000512380 ACIN1Q9UKV3 1341 aaKnown RBP10.95□□□□□ -0.66
PDLIM3-208ENST00000512380 PPP1R15AO75807 674 aaPredicted RBP10.95□□□□□ -0.66
PDLIM3-208ENST00000512380 HLA-CQ95604 372 aa10.95□□□□□ -0.66
PDLIM3-208ENST00000512380 ZNF697Q5TEC3 545 aa10.94□□□□□ -0.66
PDLIM3-208ENST00000512380 LCE2BO14633 110 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 PRR20EP86478 221 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 PRR20CP86479 221 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 PRR20DP86480 221 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 PRR20BP86481 221 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 PRR20AP86496 221 aa10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.93□□□□□ -0.66
PDLIM3-208ENST00000512380 RPIAP49247 311 aa10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 MMP16P51512 607 aa10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 PDE4CQ08493 712 aa10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 BANK1Q8NDB2 785 aa10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 USB1Q9BQ65 265 aaKnown RBP10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 SHROOM4Q9ULL8 1493 aa10.92□□□□□ -0.66
PDLIM3-208ENST00000512380 NUTM1Q86Y26 1132 aa10.91□□□□□ -0.66
PDLIM3-208ENST00000512380 CALR3Q96L12 384 aaKnown RBP10.91□□□□□ -0.66
PDLIM3-208ENST00000512380 RFC5P40937 340 aa10.9□□□□□ -0.66
PDLIM3-208ENST00000512380 MYSM1Q5VVJ2 828 aa10.9□□□□□ -0.66
PDLIM3-208ENST00000512380 GDF9O60383 454 aa10.89□□□□□ -0.67
PDLIM3-208ENST00000512380 DXOO77932 396 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms