RNA–Protein interactions for RNA: ENST00000512229.6

PCDHA4-202, Transcript of protocadherin alpha 4, humanhuman

TSL 1 (best) BASIC

Gene PCDHA4, Length 4,163 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-202ENST00000512229 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
PCDHA4-202ENST00000512229 ZNF518AQ6AHZ1 1483 aa16.38■□□□□ 0.21
PCDHA4-202ENST00000512229 GPRASP1Q5JY77 1395 aa16.38■□□□□ 0.21
PCDHA4-202ENST00000512229 TSPYL4Q9UJ04 414 aa16.38■□□□□ 0.21
PCDHA4-202ENST00000512229 EIF2S2P20042 333 aaKnown RBP16.37■□□□□ 0.21
PCDHA4-202ENST00000512229 FAM135AQ9P2D6 1515 aa16.37■□□□□ 0.21
PCDHA4-202ENST00000512229 EVA1CP58658 441 aa16.36■□□□□ 0.21
PCDHA4-202ENST00000512229 CEP170Q5SW79 1584 aa16.36■□□□□ 0.21
PCDHA4-202ENST00000512229 EXOSC9Q06265 439 aaKnown RBP16.36■□□□□ 0.21
PCDHA4-202ENST00000512229 AAMPQ13685 434 aa16.36■□□□□ 0.21
PCDHA4-202ENST00000512229 TRIM6-TRIM34B2RNG4 842 aa16.35■□□□□ 0.21
PCDHA4-202ENST00000512229 CEBPAP49715 358 aaPredicted RBP16.35■□□□□ 0.21
PCDHA4-202ENST00000512229 NECTIN2Q92692 538 aa16.35■□□□□ 0.21
PCDHA4-202ENST00000512229 SLKQ9H2G2 1235 aaPredicted RBP16.35■□□□□ 0.21
PCDHA4-202ENST00000512229 SMG6Q86US8 1419 aaKnown RBP16.35■□□□□ 0.21
PCDHA4-202ENST00000512229 SULT6B1Q6IMI4 303 aa16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 WDR63Q8IWG1 891 aa16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 RAPGEF4Q8WZA2 1011 aa16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 DISP3Q9P2K9 1392 aa16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 FKBP5Q13451 457 aaPredicted RBP16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 CHMP3Q9Y3E7 222 aa16.34■□□□□ 0.21
PCDHA4-202ENST00000512229 DNMT1P26358 1616 aaKnown RBP16.33■□□□□ 0.21
PCDHA4-202ENST00000512229 MAGI3Q5TCQ9 1506 aa16.33■□□□□ 0.2
PCDHA4-202ENST00000512229 ABCC10Q5T3U5 1492 aa16.33■□□□□ 0.2
PCDHA4-202ENST00000512229 RALGAPBQ86X10 1494 aa16.33■□□□□ 0.2
PCDHA4-202ENST00000512229 PRAG1Q86YV5 1406 aa16.33■□□□□ 0.2
PCDHA4-202ENST00000512229 PDE3AQ14432 1141 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 GAS2L2Q8NHY3 880 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 TSR2Q969E8 191 aaKnown RBP16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 NLRP2Q9NX02 1062 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 TTC5Q8N0Z6 440 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 PZPP20742 1482 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 BCAR3O75815 825 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 TPRNQ4KMQ1 711 aa16.32■□□□□ 0.2
PCDHA4-202ENST00000512229 GPATCH3Q96I76 525 aa16.31■□□□□ 0.2
PCDHA4-202ENST00000512229 FCHSD2O94868 740 aa16.31■□□□□ 0.2
PCDHA4-202ENST00000512229 RRS1Q15050 365 aaKnown RBP16.31■□□□□ 0.2
PCDHA4-202ENST00000512229 NAP1L2Q9ULW6 460 aaPredicted RBP16.3■□□□□ 0.2
PCDHA4-202ENST00000512229 ADGRL2O95490 1459 aa16.3■□□□□ 0.2
PCDHA4-202ENST00000512229 WWC1Q8IX03 1113 aa16.3■□□□□ 0.2
PCDHA4-202ENST00000512229 TRIM44Q96DX7 344 aaPredicted RBP16.3■□□□□ 0.2
PCDHA4-202ENST00000512229 WASLO00401 505 aaPredicted RBP16.29■□□□□ 0.2
PCDHA4-202ENST00000512229 NEXNQ0ZGT2 675 aa16.29■□□□□ 0.2
PCDHA4-202ENST00000512229 TAF7LQ5H9L4 462 aa16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 C9orf78Q9NZ63 289 aaPredicted RBP16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 SLFN5Q08AF3 891 aa16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 GORABQ5T7V8 394 aa16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 TESK2Q96S53 571 aa16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 TWISTNBQ3B726 338 aaPredicted RBP16.28■□□□□ 0.2
PCDHA4-202ENST00000512229 AMOTL2Q9Y2J4 779 aa16.27■□□□□ 0.2
PCDHA4-202ENST00000512229 CT47B1P0C2W7 299 aaPredicted RBP16.27■□□□□ 0.2
PCDHA4-202ENST00000512229 TMPOP42166 694 aaKnown RBP16.27■□□□□ 0.19
PCDHA4-202ENST00000512229 DDX58O95786 925 aaKnown RBP16.26■□□□□ 0.19
PCDHA4-202ENST00000512229 LNPKQ9C0E8 428 aa16.26■□□□□ 0.19
PCDHA4-202ENST00000512229 TEX14Q8IWB6 1497 aa16.25■□□□□ 0.19
PCDHA4-202ENST00000512229 ZRSR1Q15695 479 aaKnown RBP16.24■□□□□ 0.19
PCDHA4-202ENST00000512229 NME9Q86XW9 330 aa16.24■□□□□ 0.19
PCDHA4-202ENST00000512229 PLEKHO1Q53GL0 409 aaPredicted RBP16.24■□□□□ 0.19
PCDHA4-202ENST00000512229 TAOK2Q9UL54 1235 aa16.24■□□□□ 0.19
PCDHA4-202ENST00000512229 FANCIQ9NVI1 1328 aa16.24■□□□□ 0.19
PCDHA4-202ENST00000512229 AMER1Q5JTC6 1135 aaPredicted RBP16.23■□□□□ 0.19
PCDHA4-202ENST00000512229 RILPL2Q969X0 211 aa16.23■□□□□ 0.19
PCDHA4-202ENST00000512229 GBP4Q96PP9 640 aa16.22■□□□□ 0.19
PCDHA4-202ENST00000512229 NFE2L2Q16236 605 aa16.22■□□□□ 0.19
PCDHA4-202ENST00000512229 NOB1Q9ULX3 412 aaKnown RBP16.22■□□□□ 0.19
PCDHA4-202ENST00000512229 ARHGEF12Q9NZN5 1544 aa16.22■□□□□ 0.19
PCDHA4-202ENST00000512229 CCDC30Q5VVM6 783 aa16.21■□□□□ 0.19
PCDHA4-202ENST00000512229 ATF7IPQ6VMQ6 1270 aa16.21■□□□□ 0.19
PCDHA4-202ENST00000512229 TNRQ92752 1358 aa16.21■□□□□ 0.19
PCDHA4-202ENST00000512229 GOLGA6L4A6NEF3 574 aa16.21■□□□□ 0.19
PCDHA4-202ENST00000512229 SLC4A3P48751 1232 aa16.2■□□□□ 0.18
PCDHA4-202ENST00000512229 ZNF428Q96B54 188 aa16.19■□□□□ 0.18
PCDHA4-202ENST00000512229 EMILIN1Q9Y6C2 1016 aa16.19■□□□□ 0.18
PCDHA4-202ENST00000512229 ST18O60284 1047 aa16.19■□□□□ 0.18
PCDHA4-202ENST00000512229 NSD2O96028 1365 aa16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 UHRF1BP1LA0JNW5 1464 aa16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 NINLQ9Y2I6 1382 aa16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 GTF2E1P29083 439 aaPredicted RBP16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 ABCA8O94911 1581 aa16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 SLC4A2P04920 1241 aa16.18■□□□□ 0.18
PCDHA4-202ENST00000512229 MBD5Q9P267 1494 aa16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 SYTL4Q96C24 671 aaPredicted RBP16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 PTMAP06454 111 aaKnown RBP16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 XPCQ01831 940 aaPredicted RBP16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 GNAI3P08754 354 aa16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 ZNF530Q6P9A1 599 aaPredicted RBP16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 UHRF1BP1Q6BDS2 1440 aa16.17■□□□□ 0.18
PCDHA4-202ENST00000512229 UBTFL1P0CB47 393 aaPredicted RBP16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 AIMP1Q12904 312 aaKnown RBP16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 THUMPD2Q9BTF0 503 aaKnown RBP16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 DEKP35659 375 aaKnown RBP16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 HDGFL1Q5TGJ6 251 aa16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 PER1O15534 1290 aaPredicted RBP16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 REC8O95072 547 aa16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 PHF8Q9UPP1 1060 aa16.16■□□□□ 0.18
PCDHA4-202ENST00000512229 MVPQ14764 893 aaKnown RBP16.15■□□□□ 0.18
PCDHA4-202ENST00000512229 RIC3Q7Z5B4 369 aa16.15■□□□□ 0.18
PCDHA4-202ENST00000512229 RBM33Q96EV2 1170 aaKnown RBP16.15■□□□□ 0.18
PCDHA4-202ENST00000512229 PUS7Q96PZ0 661 aaKnown RBP16.15■□□□□ 0.18
PCDHA4-202ENST00000512229 PDZRN3Q9UPQ7 1066 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms