RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 SHPRHQ149N8 1683 aa24.04■■□□□ 1.44
DDX41-213ENST00000512027 JCADQ9P266 1359 aa24.03■■□□□ 1.44
DDX41-213ENST00000512027 ORAI2Q96SN7 254 aa24.03■■□□□ 1.44
DDX41-213ENST00000512027 PHF23Q9BUL5 403 aaPredicted RBP24.03■■□□□ 1.44
DDX41-213ENST00000512027 FMN2Q9NZ56 1722 aa24.02■■□□□ 1.44
DDX41-213ENST00000512027 NUTM2FA1L443 756 aa24.01■■□□□ 1.43
DDX41-213ENST00000512027 SAFB2Q14151 953 aaKnown RBP eCLIP24.01■■□□□ 1.43
DDX41-213ENST00000512027 DLC1Q96QB1 1528 aa24■■□□□ 1.43
DDX41-213ENST00000512027 LRP6O75581 1613 aa23.99■■□□□ 1.43
DDX41-213ENST00000512027 PRAM1Q96QH2 718 aa23.98■■□□□ 1.43
DDX41-213ENST00000512027 SIN3AQ96ST3 1273 aa23.98■■□□□ 1.43
DDX41-213ENST00000512027 RGPD8O14715 1765 aaPredicted RBP23.98■■□□□ 1.43
DDX41-213ENST00000512027 TRIM26Q12899 539 aaPredicted RBP23.97■■□□□ 1.43
DDX41-213ENST00000512027 TRAK1Q9UPV9 953 aa23.97■■□□□ 1.43
DDX41-213ENST00000512027 ARHGEF28Q8N1W1 1705 aaKnown RBP23.96■■□□□ 1.43
DDX41-213ENST00000512027 SIRT1Q96EB6 747 aa23.94■■□□□ 1.42
DDX41-213ENST00000512027 RGS17Q9UGC6 210 aaPredicted RBP23.94■■□□□ 1.42
DDX41-213ENST00000512027 KIAA1210Q9ULL0 1709 aa23.93■■□□□ 1.42
DDX41-213ENST00000512027 ESCO1Q5FWF5 840 aa23.93■■□□□ 1.42
DDX41-213ENST00000512027 STAC3Q96MF2 364 aa23.93■■□□□ 1.42
DDX41-213ENST00000512027 NEUROD1Q13562 356 aa23.92■■□□□ 1.42
DDX41-213ENST00000512027 POGKQ9P215 609 aa23.92■■□□□ 1.42
DDX41-213ENST00000512027 ADGRB2O60241 1585 aa23.91■■□□□ 1.42
DDX41-213ENST00000512027 USP32Q8NFA0 1604 aa23.9■■□□□ 1.42
DDX41-213ENST00000512027 SPATA31A6Q5VVP1 1343 aa23.89■■□□□ 1.42
DDX41-213ENST00000512027 HIRIP3Q9BW71 556 aaPredicted RBP23.89■■□□□ 1.41
DDX41-213ENST00000512027 PNPLA6Q8IY17 1366 aa23.89■■□□□ 1.41
DDX41-213ENST00000512027 NUTM2BA6NNL0 878 aaPredicted RBP23.88■■□□□ 1.41
DDX41-213ENST00000512027 NUTM2EB1AL46 878 aaPredicted RBP23.88■■□□□ 1.41
DDX41-213ENST00000512027 XPCQ01831 940 aaPredicted RBP23.88■■□□□ 1.41
DDX41-213ENST00000512027 NUTM2AQ8IVF1 878 aaPredicted RBP23.88■■□□□ 1.41
DDX41-213ENST00000512027 L3MBTL2Q969R5 705 aa23.88■■□□□ 1.41
DDX41-213ENST00000512027 LRRC59Q96AG4 307 aaKnown RBP23.88■■□□□ 1.41
DDX41-213ENST00000512027 SOS2Q07890 1332 aaPredicted RBP23.87■■□□□ 1.41
DDX41-213ENST00000512027 MINK1Q8N4C8 1332 aaPredicted RBP23.87■■□□□ 1.41
DDX41-213ENST00000512027 KIF1AQ12756 1690 aa23.87■■□□□ 1.41
DDX41-213ENST00000512027 PXDNQ92626 1479 aa23.87■■□□□ 1.41
DDX41-213ENST00000512027 NBPF1Q3BBV0 1214 aa23.86■■□□□ 1.41
DDX41-213ENST00000512027 FOXO3O43524 673 aa23.85■■□□□ 1.41
DDX41-213ENST00000512027 MEX3CQ5U5Q3 659 aaKnown RBP23.84■■□□□ 1.41
DDX41-213ENST00000512027 POTEAQ6S8J7 498 aa23.83■■□□□ 1.41
DDX41-213ENST00000512027 NPHP3Q7Z494 1330 aa23.83■■□□□ 1.4
DDX41-213ENST00000512027 TRPM1Q7Z4N2 1603 aa23.82■■□□□ 1.4
DDX41-213ENST00000512027 SOCS7O14512 581 aa23.81■■□□□ 1.4
DDX41-213ENST00000512027 COL22A1Q8NFW1 1626 aaPredicted RBP23.8■■□□□ 1.4
DDX41-213ENST00000512027 PHF8Q9UPP1 1060 aa23.78■■□□□ 1.4
DDX41-213ENST00000512027 TULP4Q9NRJ4 1543 aa23.78■■□□□ 1.4
DDX41-213ENST00000512027 PRR36Q9H6K5 1346 aa23.78■■□□□ 1.4
DDX41-213ENST00000512027 ANKARQ7Z5J8 1434 aa23.77■■□□□ 1.4
DDX41-213ENST00000512027 WASLO00401 505 aaPredicted RBP23.75■■□□□ 1.39
DDX41-213ENST00000512027 PMFBP1Q8TBY8 1022 aa23.75■■□□□ 1.39
DDX41-213ENST00000512027 QRICH2Q9H0J4 1663 aa23.74■■□□□ 1.39
DDX41-213ENST00000512027 ADAMTS2O95450 1211 aa23.73■■□□□ 1.39
DDX41-213ENST00000512027 KRT28Q7Z3Y7 464 aa23.73■■□□□ 1.39
DDX41-213ENST00000512027 C8orf37Q96NL8 207 aa23.72■■□□□ 1.39
DDX41-213ENST00000512027 ATP7BP35670 1465 aa23.72■■□□□ 1.39
DDX41-213ENST00000512027 ITSN1Q15811 1721 aa23.72■■□□□ 1.39
DDX41-213ENST00000512027 AFF2P51816 1311 aa23.71■■□□□ 1.39
DDX41-213ENST00000512027 NBPF8Q3BBV2 869 aa23.71■■□□□ 1.39
DDX41-213ENST00000512027 MARF1Q9Y4F3 1742 aaKnown RBP23.7■■□□□ 1.39
DDX41-213ENST00000512027 TRPM3Q9HCF6 1732 aaPredicted RBP23.7■■□□□ 1.38
DDX41-213ENST00000512027 TOPAZ1Q8N9V7 1692 aa23.7■■□□□ 1.38
DDX41-213ENST00000512027 EIF3AQ14152 1382 aaKnown RBP23.69■■□□□ 1.38
DDX41-213ENST00000512027 SPATA31A3Q5VYP0 1347 aa23.69■■□□□ 1.38
DDX41-213ENST00000512027 TNS3Q68CZ2 1445 aa23.67■■□□□ 1.38
DDX41-213ENST00000512027 ROCK2O75116 1388 aaKnown RBP23.67■■□□□ 1.38
DDX41-213ENST00000512027 TONSLQ96HA7 1378 aa23.67■■□□□ 1.38
DDX41-213ENST00000512027 CENPJQ9HC77 1338 aaPredicted RBP23.67■■□□□ 1.38
DDX41-213ENST00000512027 PLEKHG5O94827 1062 aa23.67■■□□□ 1.38
DDX41-213ENST00000512027 CDK19Q9BWU1 502 aa23.67■■□□□ 1.38
DDX41-213ENST00000512027 ABCA3Q99758 1704 aa23.67■■□□□ 1.38
DDX41-213ENST00000512027 ZNF772Q68DY9 489 aaPredicted RBP23.66■■□□□ 1.38
DDX41-213ENST00000512027 PSME1Q06323 249 aa23.65■■□□□ 1.38
DDX41-213ENST00000512027 NUDT16Q96DE0 195 aaKnown RBP23.64■■□□□ 1.37
DDX41-213ENST00000512027 ALS2Q96Q42 1657 aa23.64■■□□□ 1.37
DDX41-213ENST00000512027 LMOD2Q6P5Q4 547 aa23.63■■□□□ 1.37
DDX41-213ENST00000512027 NGLY1Q96IV0 654 aa23.63■■□□□ 1.37
DDX41-213ENST00000512027 PCGF6Q9BYE7 350 aa23.63■■□□□ 1.37
DDX41-213ENST00000512027 SBNO1A3KN83 1393 aa23.62■■□□□ 1.37
DDX41-213ENST00000512027 CABLES1Q8TDN4 633 aa23.61■■□□□ 1.37
DDX41-213ENST00000512027 NGDNQ8NEJ9 315 aaKnown RBP23.6■■□□□ 1.37
DDX41-213ENST00000512027 RALGAPBQ86X10 1494 aa23.58■■□□□ 1.37
DDX41-213ENST00000512027 GPRASP1Q5JY77 1395 aa23.58■■□□□ 1.37
DDX41-213ENST00000512027 CABP2Q9NPB3 220 aa23.58■■□□□ 1.37
DDX41-213ENST00000512027 SRPK2P78362 688 aaKnown RBP23.57■■□□□ 1.36
DDX41-213ENST00000512027 CRYBG1Q9Y4K1 1723 aa23.56■■□□□ 1.36
DDX41-213ENST00000512027 ARHGEF10O15013 1369 aa23.55■■□□□ 1.36
DDX41-213ENST00000512027 QTRT2Q9H974 415 aaKnown RBP23.55■■□□□ 1.36
DDX41-213ENST00000512027 USP21Q9UK80 565 aa23.55■■□□□ 1.36
DDX41-213ENST00000512027 PPIP5K1Q6PFW1 1433 aa23.54■■□□□ 1.36
DDX41-213ENST00000512027 RXRBP28702 533 aa23.54■■□□□ 1.36
DDX41-213ENST00000512027 PLCH1Q4KWH8 1693 aa23.54■■□□□ 1.36
DDX41-213ENST00000512027 PAK3O75914 559 aaPredicted RBP23.53■■□□□ 1.36
DDX41-213ENST00000512027 HAP1P54257 671 aaPredicted RBP23.53■■□□□ 1.36
DDX41-213ENST00000512027 CARD11Q9BXL7 1154 aa23.53■■□□□ 1.36
DDX41-213ENST00000512027 CCDC61Q9Y6R9 512 aa23.53■■□□□ 1.36
DDX41-213ENST00000512027 ACEP12821 1306 aa23.53■■□□□ 1.36
DDX41-213ENST00000512027 FNBP4Q8N3X1 1017 aaPredicted RBP23.52■■□□□ 1.36
DDX41-213ENST00000512027 POLR3AO14802 1390 aaPredicted RBP23.52■■□□□ 1.36
DDX41-213ENST00000512027 BCL9LQ86UU0 1499 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms