RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 CADPS2Q86UW7 1296 aa16.29■□□□□ 0.2
LIMCH1-210ENST00000509454 ADGRL3Q9HAR2 1447 aa16.29■□□□□ 0.2
LIMCH1-210ENST00000509454 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.28■□□□□ 0.2
LIMCH1-210ENST00000509454 NALCNQ8IZF0 1738 aa16.27■□□□□ 0.2
LIMCH1-210ENST00000509454 TRPM1Q7Z4N2 1603 aa16.27■□□□□ 0.19
LIMCH1-210ENST00000509454 FAM135BQ49AJ0 1406 aa16.26■□□□□ 0.19
LIMCH1-210ENST00000509454 SIRT1Q96EB6 747 aa16.25■□□□□ 0.19
LIMCH1-210ENST00000509454 SLAIN2Q9P270 581 aa16.25■□□□□ 0.19
LIMCH1-210ENST00000509454 TIMELESSQ9UNS1 1208 aa16.25■□□□□ 0.19
LIMCH1-210ENST00000509454 DLC1Q96QB1 1528 aa16.25■□□□□ 0.19
LIMCH1-210ENST00000509454 CARD11Q9BXL7 1154 aa16.24■□□□□ 0.19
LIMCH1-210ENST00000509454 MINK1Q8N4C8 1332 aaPredicted RBP16.24■□□□□ 0.19
LIMCH1-210ENST00000509454 HIRIP3Q9BW71 556 aaPredicted RBP16.23■□□□□ 0.19
LIMCH1-210ENST00000509454 DCCP43146 1447 aa16.23■□□□□ 0.19
LIMCH1-210ENST00000509454 ARHGEF28Q8N1W1 1705 aaKnown RBP16.22■□□□□ 0.19
LIMCH1-210ENST00000509454 NUTM2FA1L443 756 aa16.22■□□□□ 0.19
LIMCH1-210ENST00000509454 RALGAPBQ86X10 1494 aa16.21■□□□□ 0.19
LIMCH1-210ENST00000509454 POTEDQ86YR6 584 aa16.2■□□□□ 0.18
LIMCH1-210ENST00000509454 EIF3AQ14152 1382 aaKnown RBP16.2■□□□□ 0.18
LIMCH1-210ENST00000509454 CENPJQ9HC77 1338 aaPredicted RBP16.19■□□□□ 0.18
LIMCH1-210ENST00000509454 MST1RQ04912 1400 aa16.19■□□□□ 0.18
LIMCH1-210ENST00000509454 ROBO1Q9Y6N7 1651 aa16.18■□□□□ 0.18
LIMCH1-210ENST00000509454 CDC42BPGQ6DT37 1551 aa16.18■□□□□ 0.18
LIMCH1-210ENST00000509454 HSPA1LP34931 641 aa16.17■□□□□ 0.18
LIMCH1-210ENST00000509454 GPRASP1Q5JY77 1395 aa16.16■□□□□ 0.18
LIMCH1-210ENST00000509454 ESCO1Q5FWF5 840 aa16.16■□□□□ 0.18
LIMCH1-210ENST00000509454 C1orf167Q5SNV9 1468 aa16.16■□□□□ 0.18
LIMCH1-210ENST00000509454 QRICH2Q9H0J4 1663 aa16.15■□□□□ 0.18
LIMCH1-210ENST00000509454 BRINP3Q76B58 766 aa16.14■□□□□ 0.18
LIMCH1-210ENST00000509454 WASLO00401 505 aaPredicted RBP16.14■□□□□ 0.17
LIMCH1-210ENST00000509454 ORAI2Q96SN7 254 aa16.14■□□□□ 0.17
LIMCH1-210ENST00000509454 FMN2Q9NZ56 1722 aa16.14■□□□□ 0.17
LIMCH1-210ENST00000509454 ADGRB2O60241 1585 aa16.13■□□□□ 0.17
LIMCH1-210ENST00000509454 SRPK2P78362 688 aaKnown RBP16.12■□□□□ 0.17
LIMCH1-210ENST00000509454 CDK19Q9BWU1 502 aa16.12■□□□□ 0.17
LIMCH1-210ENST00000509454 PHLPP1O60346 1717 aa16.1■□□□□ 0.17
LIMCH1-210ENST00000509454 DDX17Q92841 729 aaKnown RBP16.1■□□□□ 0.17
LIMCH1-210ENST00000509454 EVC2Q86UK5 1308 aa16.09■□□□□ 0.17
LIMCH1-210ENST00000509454 USP47Q96K76 1375 aa16.09■□□□□ 0.17
LIMCH1-210ENST00000509454 TULP4Q9NRJ4 1543 aa16.08■□□□□ 0.17
LIMCH1-210ENST00000509454 RGPD8O14715 1765 aaPredicted RBP16.08■□□□□ 0.17
LIMCH1-210ENST00000509454 CABP2Q9NPB3 220 aa16.08■□□□□ 0.16
LIMCH1-210ENST00000509454 PHF8Q9UPP1 1060 aa16.08■□□□□ 0.16
LIMCH1-210ENST00000509454 ANKARQ7Z5J8 1434 aa16.08■□□□□ 0.16
LIMCH1-210ENST00000509454 ST20-MTHFSA0A0A6YYL1 179 aa16.07■□□□□ 0.16
LIMCH1-210ENST00000509454 FOXO3O43524 673 aa16.07■□□□□ 0.16
LIMCH1-210ENST00000509454 PMFBP1Q8TBY8 1022 aa16.07■□□□□ 0.16
LIMCH1-210ENST00000509454 NUDT16Q96DE0 195 aaKnown RBP16.07■□□□□ 0.16
LIMCH1-210ENST00000509454 XPCQ01831 940 aaPredicted RBP16.06■□□□□ 0.16
LIMCH1-210ENST00000509454 PRR36Q9H6K5 1346 aa16.06■□□□□ 0.16
LIMCH1-210ENST00000509454 AHDC1Q5TGY3 1603 aaPredicted RBP16.05■□□□□ 0.16
LIMCH1-210ENST00000509454 NPHP3Q7Z494 1330 aa16.05■□□□□ 0.16
LIMCH1-210ENST00000509454 USP32Q8NFA0 1604 aa16.05■□□□□ 0.16
LIMCH1-210ENST00000509454 NGDNQ8NEJ9 315 aaKnown RBP16.04■□□□□ 0.16
LIMCH1-210ENST00000509454 KIF1AQ12756 1690 aa16.04■□□□□ 0.16
LIMCH1-210ENST00000509454 NHSL1Q5SYE7 1610 aa16.03■□□□□ 0.16
LIMCH1-210ENST00000509454 PSME1Q06323 249 aa16.03■□□□□ 0.16
LIMCH1-210ENST00000509454 ITSN1Q15811 1721 aa16.02■□□□□ 0.16
LIMCH1-210ENST00000509454 ATP7BP35670 1465 aa16.02■□□□□ 0.16
LIMCH1-210ENST00000509454 COL16A1Q07092 1604 aaPredicted RBP16.02■□□□□ 0.15
LIMCH1-210ENST00000509454 EIF4G2P78344 907 aaKnown RBP eCLIP16.01■□□□□ 0.15
LIMCH1-210ENST00000509454 LRRC59Q96AG4 307 aaKnown RBP16.01■□□□□ 0.15
LIMCH1-210ENST00000509454 CCDC61Q9Y6R9 512 aa16.01■□□□□ 0.15
LIMCH1-210ENST00000509454 KRT28Q7Z3Y7 464 aa16■□□□□ 0.15
LIMCH1-210ENST00000509454 SBNO2Q9Y2G9 1366 aa16■□□□□ 0.15
LIMCH1-210ENST00000509454 PPIP5K1Q6PFW1 1433 aa16■□□□□ 0.15
LIMCH1-210ENST00000509454 LMOD2Q6P5Q4 547 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 JCADQ9P266 1359 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 SOS2Q07890 1332 aaPredicted RBP15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 SLC24A1O60721 1099 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 HSPA5P11021 654 aaKnown RBP15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 TMF1P82094 1093 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 TMC1Q8TDI8 760 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 TESK2Q96S53 571 aa15.99■□□□□ 0.15
LIMCH1-210ENST00000509454 ATAD2Q6PL18 1390 aa15.98■□□□□ 0.15
LIMCH1-210ENST00000509454 PAK3O75914 559 aaPredicted RBP15.98■□□□□ 0.15
LIMCH1-210ENST00000509454 PLEKHG5O94827 1062 aa15.98■□□□□ 0.15
LIMCH1-210ENST00000509454 CABP1Q9NZU7 370 aa15.98■□□□□ 0.15
LIMCH1-210ENST00000509454 PXDNQ92626 1479 aa15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 ACEP12821 1306 aa15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 NUTM2BA6NNL0 878 aaPredicted RBP15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 NUTM2EB1AL46 878 aaPredicted RBP15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 NUTM2AQ8IVF1 878 aaPredicted RBP15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 POLR3GLQ9BT43 218 aa15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 TOPAZ1Q8N9V7 1692 aa15.97■□□□□ 0.15
LIMCH1-210ENST00000509454 PLEKHG3A1L390 1219 aa15.95■□□□□ 0.14
LIMCH1-210ENST00000509454 DISP3Q9P2K9 1392 aa15.95■□□□□ 0.14
LIMCH1-210ENST00000509454 CDCA8Q53HL2 280 aa15.94■□□□□ 0.14
LIMCH1-210ENST00000509454 MEX3CQ5U5Q3 659 aaKnown RBP15.94■□□□□ 0.14
LIMCH1-210ENST00000509454 PNPLA6Q8IY17 1366 aa15.93■□□□□ 0.14
LIMCH1-210ENST00000509454 SHPRHQ149N8 1683 aa15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 SPATA31A3Q5VYP0 1347 aa15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 HAP1P54257 671 aaPredicted RBP15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 TNS3Q68CZ2 1445 aa15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 SBNO1A3KN83 1393 aa15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 POLR3AO14802 1390 aaPredicted RBP15.92■□□□□ 0.14
LIMCH1-210ENST00000509454 SPATA31A6Q5VVP1 1343 aa15.91■□□□□ 0.14
LIMCH1-210ENST00000509454 HDGFL2Q7Z4V5 671 aaPredicted RBP15.9■□□□□ 0.14
LIMCH1-210ENST00000509454 SLC12A5Q9H2X9 1139 aa15.9■□□□□ 0.14
LIMCH1-210ENST00000509454 PUS7Q96PZ0 661 aaKnown RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms