RNA–Protein interactions for RNA: ENST00000505886.5

PDLIM3-206, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4

Gene PDLIM3, Length 571 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-206ENST00000505886 PRAM1Q96QH2 718 aa22.36■■□□□ 1.17
PDLIM3-206ENST00000505886 NALCNQ8IZF0 1738 aa22.36■■□□□ 1.17
PDLIM3-206ENST00000505886 JCADQ9P266 1359 aa22.36■■□□□ 1.17
PDLIM3-206ENST00000505886 KIAA1210Q9ULL0 1709 aa22.35■■□□□ 1.17
PDLIM3-206ENST00000505886 ILDR2Q71H61 639 aa22.34■■□□□ 1.17
PDLIM3-206ENST00000505886 SIN3AQ96ST3 1273 aa22.34■■□□□ 1.17
PDLIM3-206ENST00000505886 NEUROD1Q13562 356 aa22.33■■□□□ 1.17
PDLIM3-206ENST00000505886 LRRC59Q96AG4 307 aaKnown RBP22.32■■□□□ 1.16
PDLIM3-206ENST00000505886 TRAK1Q9UPV9 953 aa22.32■■□□□ 1.16
PDLIM3-206ENST00000505886 SPATA31A6Q5VVP1 1343 aa22.31■■□□□ 1.16
PDLIM3-206ENST00000505886 PLEKHH1Q9ULM0 1364 aa22.31■■□□□ 1.16
PDLIM3-206ENST00000505886 TIMELESSQ9UNS1 1208 aa22.31■■□□□ 1.16
PDLIM3-206ENST00000505886 TONSLQ96HA7 1378 aa22.3■■□□□ 1.16
PDLIM3-206ENST00000505886 NPHP3Q7Z494 1330 aa22.3■■□□□ 1.16
PDLIM3-206ENST00000505886 ANKARQ7Z5J8 1434 aa22.29■■□□□ 1.16
PDLIM3-206ENST00000505886 ADGRB2O60241 1585 aa22.28■■□□□ 1.16
PDLIM3-206ENST00000505886 SOCS7O14512 581 aa22.27■■□□□ 1.16
PDLIM3-206ENST00000505886 ESCO1Q5FWF5 840 aa22.27■■□□□ 1.16
PDLIM3-206ENST00000505886 PHF23Q9BUL5 403 aaPredicted RBP22.27■■□□□ 1.16
PDLIM3-206ENST00000505886 SOS2Q07890 1332 aaPredicted RBP22.26■■□□□ 1.15
PDLIM3-206ENST00000505886 PHLPP1O60346 1717 aa22.26■■□□□ 1.15
PDLIM3-206ENST00000505886 COL16A1Q07092 1604 aaPredicted RBP22.25■■□□□ 1.15
PDLIM3-206ENST00000505886 ORAI2Q96SN7 254 aa22.25■■□□□ 1.15
PDLIM3-206ENST00000505886 PCGF6Q9BYE7 350 aa22.25■■□□□ 1.15
PDLIM3-206ENST00000505886 MED1Q15648 1581 aaPredicted RBP22.24■■□□□ 1.15
PDLIM3-206ENST00000505886 NHSL1Q5SYE7 1610 aa22.22■■□□□ 1.15
PDLIM3-206ENST00000505886 WASLO00401 505 aaPredicted RBP22.22■■□□□ 1.15
PDLIM3-206ENST00000505886 NBPF1Q3BBV0 1214 aa22.22■■□□□ 1.15
PDLIM3-206ENST00000505886 GPRASP1Q5JY77 1395 aa22.22■■□□□ 1.15
PDLIM3-206ENST00000505886 ROCK2O75116 1388 aaKnown RBP22.21■■□□□ 1.15
PDLIM3-206ENST00000505886 SAFB2Q14151 953 aaKnown RBP eCLIP22.2■■□□□ 1.14
PDLIM3-206ENST00000505886 CENPJQ9HC77 1338 aaPredicted RBP22.19■■□□□ 1.14
PDLIM3-206ENST00000505886 FMN2Q9NZ56 1722 aa22.18■■□□□ 1.14
PDLIM3-206ENST00000505886 SLC24A1O60721 1099 aa22.18■■□□□ 1.14
PDLIM3-206ENST00000505886 PSME1Q06323 249 aa22.18■■□□□ 1.14
PDLIM3-206ENST00000505886 PHF8Q9UPP1 1060 aa22.18■■□□□ 1.14
PDLIM3-206ENST00000505886 MINK1Q8N4C8 1332 aaPredicted RBP22.17■■□□□ 1.14
PDLIM3-206ENST00000505886 KIF1AQ12756 1690 aa22.17■■□□□ 1.14
PDLIM3-206ENST00000505886 TULP4Q9NRJ4 1543 aa22.16■■□□□ 1.14
PDLIM3-206ENST00000505886 SHPRHQ149N8 1683 aa22.15■■□□□ 1.14
PDLIM3-206ENST00000505886 FOXO3O43524 673 aa22.15■■□□□ 1.14
PDLIM3-206ENST00000505886 ARHGEF28Q8N1W1 1705 aaKnown RBP22.14■■□□□ 1.13
PDLIM3-206ENST00000505886 TRPM1Q7Z4N2 1603 aa22.13■■□□□ 1.13
PDLIM3-206ENST00000505886 PNPLA6Q8IY17 1366 aa22.13■■□□□ 1.13
PDLIM3-206ENST00000505886 HIRIP3Q9BW71 556 aaPredicted RBP22.13■■□□□ 1.13
PDLIM3-206ENST00000505886 RALGAPBQ86X10 1494 aa22.13■■□□□ 1.13
PDLIM3-206ENST00000505886 PXDNQ92626 1479 aa22.12■■□□□ 1.13
PDLIM3-206ENST00000505886 NUTM2FA1L443 756 aa22.12■■□□□ 1.13
PDLIM3-206ENST00000505886 SBNO1A3KN83 1393 aa22.12■■□□□ 1.13
PDLIM3-206ENST00000505886 NBPF8Q3BBV2 869 aa22.11■■□□□ 1.13
PDLIM3-206ENST00000505886 CCDC61Q9Y6R9 512 aa22.11■■□□□ 1.13
PDLIM3-206ENST00000505886 SBNO2Q9Y2G9 1366 aa22.11■■□□□ 1.13
PDLIM3-206ENST00000505886 CDK19Q9BWU1 502 aa22.1■■□□□ 1.13
PDLIM3-206ENST00000505886 CARD11Q9BXL7 1154 aa22.1■■□□□ 1.13
PDLIM3-206ENST00000505886 DDX17Q92841 729 aaKnown RBP22.09■■□□□ 1.13
PDLIM3-206ENST00000505886 NUDT16Q96DE0 195 aaKnown RBP22.09■■□□□ 1.13
PDLIM3-206ENST00000505886 EVC2Q86UK5 1308 aa22.08■■□□□ 1.13
PDLIM3-206ENST00000505886 MEX3CQ5U5Q3 659 aaKnown RBP22.08■■□□□ 1.13
PDLIM3-206ENST00000505886 KRT28Q7Z3Y7 464 aa22.08■■□□□ 1.13
PDLIM3-206ENST00000505886 ARHGEF10O15013 1369 aa22.08■■□□□ 1.12
PDLIM3-206ENST00000505886 SPATA31A3Q5VYP0 1347 aa22.07■■□□□ 1.12
PDLIM3-206ENST00000505886 ZNF772Q68DY9 489 aaPredicted RBP22.07■■□□□ 1.12
PDLIM3-206ENST00000505886 PLEKHG3A1L390 1219 aa22.06■■□□□ 1.12
PDLIM3-206ENST00000505886 BRD4O60885 1362 aaPredicted RBP22.06■■□□□ 1.12
PDLIM3-206ENST00000505886 PRR36Q9H6K5 1346 aa22.06■■□□□ 1.12
PDLIM3-206ENST00000505886 ATP7BP35670 1465 aa22.05■■□□□ 1.12
PDLIM3-206ENST00000505886 CCER1Q8TC90 406 aaPredicted RBP22.05■■□□□ 1.12
PDLIM3-206ENST00000505886 NGDNQ8NEJ9 315 aaKnown RBP22.04■■□□□ 1.12
PDLIM3-206ENST00000505886 POLR3AO14802 1390 aaPredicted RBP22.03■■□□□ 1.12
PDLIM3-206ENST00000505886 SRPK2P78362 688 aaKnown RBP22.03■■□□□ 1.12
PDLIM3-206ENST00000505886 PUS7Q96PZ0 661 aaKnown RBP22.03■■□□□ 1.12
PDLIM3-206ENST00000505886 TNS3Q68CZ2 1445 aa22.03■■□□□ 1.12
PDLIM3-206ENST00000505886 COL22A1Q8NFW1 1626 aaPredicted RBP22.02■■□□□ 1.12
PDLIM3-206ENST00000505886 LRP6O75581 1613 aa22.02■■□□□ 1.11
PDLIM3-206ENST00000505886 USP32Q8NFA0 1604 aa22.02■■□□□ 1.11
PDLIM3-206ENST00000505886 PMFBP1Q8TBY8 1022 aa22.01■■□□□ 1.11
PDLIM3-206ENST00000505886 NUTM2BA6NNL0 878 aaPredicted RBP22■■□□□ 1.11
PDLIM3-206ENST00000505886 NUTM2EB1AL46 878 aaPredicted RBP22■■□□□ 1.11
PDLIM3-206ENST00000505886 NUTM2AQ8IVF1 878 aaPredicted RBP22■■□□□ 1.11
PDLIM3-206ENST00000505886 RGS17Q9UGC6 210 aaPredicted RBP22■■□□□ 1.11
PDLIM3-206ENST00000505886 ATAD2Q6PL18 1390 aa21.99■■□□□ 1.11
PDLIM3-206ENST00000505886 XPCQ01831 940 aaPredicted RBP21.98■■□□□ 1.11
PDLIM3-206ENST00000505886 ITSN1Q15811 1721 aa21.97■■□□□ 1.11
PDLIM3-206ENST00000505886 ZNF692Q9BU19 519 aaPredicted RBP21.96■■□□□ 1.11
PDLIM3-206ENST00000505886 QRICH2Q9H0J4 1663 aa21.95■■□□□ 1.1
PDLIM3-206ENST00000505886 ACEP12821 1306 aa21.95■■□□□ 1.1
PDLIM3-206ENST00000505886 FNBP4Q8N3X1 1017 aaPredicted RBP21.94■■□□□ 1.1
PDLIM3-206ENST00000505886 CABP2Q9NPB3 220 aa21.94■■□□□ 1.1
PDLIM3-206ENST00000505886 PPIP5K1Q6PFW1 1433 aa21.94■■□□□ 1.1
PDLIM3-206ENST00000505886 NGLY1Q96IV0 654 aa21.93■■□□□ 1.1
PDLIM3-206ENST00000505886 C8orf37Q96NL8 207 aa21.92■■□□□ 1.1
PDLIM3-206ENST00000505886 HAP1P54257 671 aaPredicted RBP21.91■■□□□ 1.1
PDLIM3-206ENST00000505886 TOPAZ1Q8N9V7 1692 aa21.91■■□□□ 1.1
PDLIM3-206ENST00000505886 NINLQ9Y2I6 1382 aa21.9■■□□□ 1.1
PDLIM3-206ENST00000505886 AFF2P51816 1311 aa21.9■■□□□ 1.1
PDLIM3-206ENST00000505886 ADAMTS2O95450 1211 aa21.9■■□□□ 1.1
PDLIM3-206ENST00000505886 POTEAQ6S8J7 498 aa21.9■■□□□ 1.1
PDLIM3-206ENST00000505886 CABP1Q9NZU7 370 aa21.9■■□□□ 1.1
PDLIM3-206ENST00000505886 CDCA8Q53HL2 280 aa21.89■■□□□ 1.09
PDLIM3-206ENST00000505886 LMOD2Q6P5Q4 547 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms